Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47385 * 240.00275 * 3 2 1 5 5 H 1.48503 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00175 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36433 * 119.81257 * 180.23043 * 10 9 7 12 12 C 1.39311 * 120.18745 * 359.49339 * 11 10 9 13 13 O 1.35676 * 119.82105 * 180.27884 * 12 11 10 14 14 C 1.42900 * 116.99767 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46605 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47615 * 55.00256 * 15 14 13 17 17 O 1.42899 * 109.47517 * 294.99852 * 15 14 13 18 18 C 1.53004 * 109.47032 * 174.99963 * 15 14 13 19 19 N 1.46502 * 109.47246 * 184.99917 * 18 15 14 20 20 C 1.36034 * 126.34841 * 265.02495 * 19 18 15 21 21 N 1.30109 * 110.09730 * 180.02562 * 20 19 18 22 22 C 1.35786 * 109.64455 * 359.97438 * 21 20 19 23 23 C 1.39744 * 133.60232 * 180.02562 * 22 21 20 24 24 C 1.36605 * 119.88475 * 179.22921 * 23 22 21 25 25 C 1.38777 * 120.66577 * 0.63646 * 24 23 22 26 26 C 1.37854 * 120.45325 * 359.59855 * 25 24 23 27 27 C 1.38055 * 126.34591 * 84.71641 * 19 18 15 28 28 C 1.39318 * 120.36095 * 0.26208 * 12 11 10 29 29 C 1.36432 * 120.18845 * 359.97438 * 28 12 11 30 30 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.09414 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.90986 * 179.77322 * 11 10 9 33 33 H 1.08997 * 109.47498 * 299.99543 * 14 13 12 34 34 H 1.08994 * 109.47350 * 59.99907 * 14 13 12 35 35 H 0.96704 * 113.99659 * 300.00214 * 17 15 14 36 36 H 1.09004 * 109.46916 * 304.99971 * 18 15 14 37 37 H 1.08996 * 109.47088 * 64.99460 * 18 15 14 38 38 H 1.07998 * 124.95292 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.05537 * 359.95711 * 23 22 21 40 40 H 1.07999 * 119.66598 * 180.22748 * 24 23 22 41 41 H 1.08003 * 119.76882 * 179.61770 * 25 24 23 42 42 H 1.08000 * 120.15276 * 180.02562 * 26 25 24 43 43 H 1.07997 * 119.90384 * 180.02562 * 28 12 11 44 44 H 1.07996 * 120.09717 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5679 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4674 14 6 -0.0201 -7.1115 -0.9603 15 6 -0.8554 -8.2876 -1.4703 16 1 -0.9053 -8.2531 -2.5586 17 8 -2.1757 -8.2039 -0.9301 18 6 -0.2071 -9.6020 -1.0311 19 7 -0.9384 -10.7275 -1.6184 20 6 -1.9354 -11.4384 -1.0259 21 7 -2.3609 -12.3679 -1.8308 22 6 -1.6656 -12.3162 -2.9960 23 6 -1.7088 -13.0606 -4.1779 24 6 -0.8682 -12.7501 -5.2090 25 6 0.0410 -11.7082 -5.0917 26 6 0.1046 -10.9635 -3.9334 27 6 -0.7474 -11.2593 -2.8780 28 6 1.1892 -4.7966 -0.2796 29 6 1.8282 -3.6481 0.0864 30 1 -0.4851 0.8400 -0.0004 31 1 -0.1443 -1.4105 -1.5764 32 1 -1.2745 -3.4833 -2.2097 33 1 1.0095 -7.2233 -1.3003 34 1 -0.0431 -7.0945 0.1292 35 1 -2.2076 -8.2289 0.0361 36 1 0.8292 -9.6265 -1.3682 37 1 -0.2373 -9.6766 0.0559 38 1 -2.3175 -11.2581 -0.0320 39 1 -2.4136 -13.8725 -4.2803 40 1 -0.9072 -13.3254 -6.1221 41 1 0.7030 -11.4792 -5.9137 42 1 0.8138 -10.1535 -3.8476 43 1 1.5524 -5.7507 0.0728 44 1 2.6959 -3.6920 0.7279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040463192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = 7.900981 kcal Electronic energy + Delta-G solvation = -27263.380509 eV Core-core repulsion = 23339.548166 eV Total energy + Delta-G solvation = -3923.832343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.36245 -39.23230 -37.96951 -37.29071 -36.18781 -34.29816 -33.39833 -31.27680 -30.27801 -29.58054 -29.51964 -29.03747 -26.40664 -24.72117 -23.48005 -22.78040 -22.14931 -20.97343 -20.83122 -20.59179 -17.87248 -17.50747 -17.43347 -16.89820 -16.61452 -16.23580 -15.99990 -15.74346 -15.22159 -14.53270 -14.50563 -14.22446 -14.03682 -14.01638 -13.80897 -13.79890 -12.96976 -12.64850 -12.40839 -12.24424 -12.18012 -12.06995 -11.87869 -11.71696 -11.52789 -11.38003 -11.17143 -11.01765 -10.78935 -10.69538 -10.19262 -10.12701 -10.07504 -9.91594 -9.42212 -9.09399 -8.57002 -8.30955 -7.73092 -7.12245 -6.79139 -4.33030 0.76066 1.30769 2.25434 2.61188 2.71908 2.86773 3.03985 3.05911 3.16386 3.61919 3.70462 3.89818 3.96597 4.06782 4.28028 4.35492 4.54368 4.63490 4.74743 4.78442 4.82045 4.92222 5.02470 5.20738 5.22497 5.30826 5.38256 5.50655 5.58509 5.69308 5.91751 5.94294 6.13541 6.20256 6.30491 6.31461 6.62942 6.65129 6.86960 6.89663 7.02909 7.10681 7.34627 7.39921 7.47517 7.66381 7.69601 7.92964 8.12482 8.34996 8.56743 8.82620 8.90404 10.15366 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.001859 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.465642 B =15059.785800 C =15410.294529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.090 3.910 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.014 4.014 13 O -0.316 6.316 14 C 0.041 3.959 15 C 0.095 3.905 16 H 0.111 0.889 17 O -0.542 6.542 18 C 0.082 3.918 19 N -0.483 5.483 20 C 0.272 3.728 21 N -0.501 5.501 22 C 0.045 3.955 23 C -0.066 4.066 24 C -0.130 4.130 25 C -0.104 4.104 26 C -0.109 4.109 27 C 0.047 3.953 28 C -0.166 4.166 29 C -0.200 4.200 30 H 0.282 0.718 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.373 0.627 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.212 0.788 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -19.805 -3.655 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.057 4.057 13 O -0.231 6.231 14 C -0.036 4.036 15 C 0.034 3.966 16 H 0.129 0.871 17 O -0.346 6.346 18 C -0.042 4.042 19 N -0.173 5.173 20 C -0.013 4.013 21 N -0.219 5.219 22 C -0.073 4.073 23 C -0.086 4.086 24 C -0.150 4.150 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.061 4.061 28 C -0.185 4.185 29 C -0.220 4.220 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.228 0.772 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.088 -20.110 -4.162 20.565 hybrid contribution 1.404 1.431 0.849 2.177 sum 0.316 -18.679 -3.313 18.973 Atomic orbital electron populations 1.69817 1.07524 1.29383 1.35538 1.25897 0.94743 1.01301 0.92323 0.86364 0.80128 0.80268 0.79938 1.18841 1.20335 1.19072 1.19440 0.98032 0.91227 1.40568 0.90532 1.17603 0.91815 0.92128 0.89732 1.20991 0.98491 0.96326 0.99517 1.19841 1.00686 0.90202 1.02818 1.18587 0.97019 0.84619 1.05458 1.85894 1.54475 1.11903 1.70858 1.22981 0.97050 0.85152 0.98460 1.22320 0.83294 0.90289 1.00660 0.87106 1.86723 1.26095 1.96335 1.25489 1.22480 0.96880 0.84800 0.99998 1.45248 1.31754 1.27794 1.12466 1.25298 0.87534 0.88859 0.99618 1.70464 1.26880 1.22488 1.02100 1.19074 0.96335 0.97231 0.94671 1.20019 0.99302 0.98920 0.90335 1.20646 0.96909 0.98672 0.98789 1.20899 0.99044 0.95586 0.96811 1.20012 0.99551 1.01600 0.91848 1.18905 1.01583 0.98164 0.87486 1.20364 0.97844 0.97684 1.02638 1.20551 1.03185 0.92504 1.05740 0.90757 0.85626 0.88429 0.92136 0.92476 0.77986 0.87930 0.87744 0.77208 0.85512 0.85441 0.85276 0.85998 0.89012 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.28 10.96 55.55 0.61 -19.67 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.31 29.60 -169.99 -5.03 13.28 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.00 9.04 -37.83 -0.34 -12.34 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 10 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 11 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.32 -6.08 10.09 -23.58 -0.24 -6.32 16 14 C 0.04 0.54 4.37 37.16 0.16 0.70 16 15 C 0.09 1.02 3.49 -26.73 -0.09 0.93 16 16 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 17 O -0.54 -6.45 13.25 -40.08 -0.53 -6.99 16 18 C 0.08 0.61 5.80 -4.04 -0.02 0.59 16 19 N -0.48 -4.78 2.75 -115.79 -0.32 -5.10 16 20 C 0.27 2.72 12.49 -89.79 -1.12 1.60 16 21 N -0.50 -6.48 11.27 -12.05 -0.14 -6.61 16 22 C 0.04 0.57 7.23 -84.70 -0.61 -0.04 16 23 C -0.07 -0.71 10.05 -39.61 -0.40 -1.11 16 24 C -0.13 -1.14 9.96 -39.97 -0.40 -1.54 16 25 C -0.10 -0.92 10.03 -39.52 -0.40 -1.31 16 26 C -0.11 -1.10 10.05 -39.50 -0.40 -1.50 16 27 C 0.05 0.55 6.87 -83.99 -0.58 -0.03 16 28 C -0.17 -3.55 8.96 -39.83 -0.36 -3.91 16 29 C -0.20 -4.73 9.74 -39.25 -0.38 -5.11 16 30 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 31 H 0.13 3.30 6.17 -52.49 -0.32 2.98 16 32 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 33 H 0.06 0.73 7.64 -51.93 -0.40 0.34 16 34 H 0.06 0.68 7.65 -51.93 -0.40 0.29 16 35 H 0.37 2.88 9.05 45.56 0.41 3.29 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.48 8.13 -51.93 -0.42 0.06 16 38 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.09 1.63 6.27 -52.49 -0.33 1.30 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.80 377.11 -11.39 -44.19 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.81 Total: 8.62 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -6.62 Total: -27.08 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.15 Total: -31.38 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.77 Total: -13.30 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.80 -11.39 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040463192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.091 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds