Wall clock time and date at job start Tue Mar 31 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50709 * 110.53343 * 2 1 4 4 C 1.38226 * 119.99989 * 271.10500 * 3 2 1 5 5 C 1.38230 * 120.00146 * 179.79124 * 4 3 2 6 6 C 1.38240 * 119.99653 * 0.45810 * 5 4 3 7 7 S 1.76203 * 119.99906 * 179.79271 * 6 5 4 8 8 C 1.81392 * 104.45130 * 269.97771 * 7 6 5 9 9 O 1.42106 * 104.27585 * 26.05247 * 7 6 5 10 10 O 1.42096 * 104.27864 * 153.90475 * 7 6 5 11 11 C 1.38228 * 120.00231 * 359.77068 * 6 5 4 12 12 C 1.38231 * 119.99802 * 91.37363 * 3 2 1 13 13 N 1.47309 * 110.59963 * 122.82854 * 2 1 3 14 14 C 1.34525 * 106.62076 * 118.53093 * 13 2 1 15 15 O 1.21528 * 123.77274 * 180.02562 * 14 13 2 16 16 N 1.33792 * 112.45678 * 359.97438 * 14 13 2 17 17 C 1.37510 * 124.18014 * 179.97438 * 16 14 13 18 18 H 1.08008 * 119.99562 * 327.29923 * 17 16 14 19 19 C 1.38889 * 120.00401 * 147.02516 * 17 16 14 20 20 N 1.31379 * 119.99694 * 340.56481 * 19 17 16 21 21 Si 1.86797 * 120.00255 * 160.56328 * 19 17 16 22 22 H 1.48497 * 109.47440 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47185 * 120.00292 * 21 19 17 24 24 H 1.48509 * 109.47337 * 240.00168 * 21 19 17 25 25 C 1.34769 * 111.64105 * 0.23538 * 16 14 13 26 26 O 1.21241 * 127.15330 * 179.73584 * 25 16 14 27 27 H 1.08996 * 109.47083 * 297.86871 * 1 2 3 28 28 H 1.08999 * 109.47211 * 57.87143 * 1 2 3 29 29 H 1.08997 * 109.46521 * 177.87413 * 1 2 3 30 30 H 1.08003 * 120.00226 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.00470 * 180.25363 * 5 4 3 32 32 H 1.09008 * 109.47441 * 60.00212 * 8 7 6 33 33 H 1.09005 * 109.47456 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47199 * 300.00301 * 8 7 6 35 35 H 1.07993 * 120.00228 * 180.02562 * 11 6 5 36 36 H 1.08006 * 120.00151 * 359.97438 * 12 3 2 37 37 H 0.97005 * 126.69398 * 298.56126 * 13 2 1 38 38 H 0.97005 * 120.00349 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2794 2.0667 -1.1968 5 6 2.7602 3.3627 -1.1968 6 6 3.0291 4.0000 0.0001 7 16 3.6471 5.6501 0.0001 8 6 5.4504 5.4581 -0.0408 9 8 3.1764 6.2006 -1.2225 10 8 3.2304 6.1804 1.2507 11 6 2.8128 3.3430 1.1968 12 6 2.3279 2.0485 1.1968 13 7 2.0483 -0.7475 1.1587 14 6 2.7600 -1.7770 0.6654 15 8 3.3284 -2.5985 1.3574 16 7 2.7712 -1.7961 -0.6724 17 6 3.4254 -2.7420 -1.4261 18 1 4.3440 -3.1799 -1.0642 19 6 2.9019 -3.1386 -2.6499 20 7 1.6348 -2.9242 -2.9227 21 14 3.9994 -3.9766 -3.9078 22 1 5.3744 -4.1004 -3.3609 23 1 3.4637 -5.3284 -4.2097 24 1 4.0324 -3.1679 -5.1530 25 6 2.0668 -0.7703 -1.1900 26 8 1.8969 -0.5170 -2.3634 27 1 -0.3633 0.4804 0.9084 28 1 -0.3633 0.5465 -0.8703 29 1 -0.3632 -1.0270 -0.0381 30 1 2.0735 1.5672 -2.1320 31 1 2.9288 3.8761 -2.1318 32 1 5.7378 4.9160 -0.9418 33 1 5.9206 6.4415 -0.0426 34 1 5.7765 4.9014 0.8377 35 1 3.0225 3.8411 2.1319 36 1 2.1591 1.5350 2.1319 37 1 1.9042 -0.5386 2.0949 38 1 1.2691 -3.2008 -3.7776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040543435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:21 Heat of formation + Delta-G solvation = -66.763517 kcal Electronic energy + Delta-G solvation = -27527.236894 eV Core-core repulsion = 23463.944618 eV Total energy + Delta-G solvation = -4063.292276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.64445 -39.15900 -37.27303 -37.23829 -36.11869 -35.54236 -34.39713 -32.15305 -31.29294 -30.94064 -29.81900 -29.27320 -25.96651 -24.47887 -22.99624 -22.62823 -20.92902 -20.15827 -19.19249 -18.04823 -17.64182 -16.50481 -16.37893 -16.30358 -16.09308 -15.78501 -15.03940 -14.75400 -14.53180 -14.34974 -14.02293 -13.89122 -13.61618 -13.59063 -13.50914 -13.46142 -12.82763 -12.63314 -12.48238 -12.25454 -12.14332 -12.08301 -11.72073 -11.70878 -11.33866 -11.28311 -11.12197 -10.88421 -10.76156 -10.44210 -9.77123 -9.42907 -9.37069 -9.06711 -8.93155 -8.77735 -8.05964 -6.52736 -4.29324 -0.13431 0.72242 1.28787 2.68196 2.77606 3.14101 3.18627 3.25109 3.29810 3.43743 3.77654 3.92864 4.03275 4.25966 4.31449 4.49507 4.54165 4.60381 4.78998 4.85207 5.00275 5.14251 5.21561 5.35289 5.36663 5.43752 5.64216 5.76010 5.83815 5.92124 6.03769 6.12631 6.29028 6.42150 6.52312 6.81055 7.34133 7.46401 7.83643 8.06158 8.60190 8.88227 9.07749 9.64879 10.56942 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003591 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.857572 B = 7795.954976 C = 8398.701943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.148 3.852 3 C -0.018 4.018 4 C -0.124 4.124 5 C -0.022 4.022 6 C -0.664 4.664 7 S 2.504 3.496 8 C -0.651 4.651 9 O -0.939 6.939 10 O -0.942 6.942 11 C -0.027 4.027 12 C -0.125 4.125 13 N -0.738 5.738 14 C 0.679 3.321 15 O -0.566 6.566 16 N -0.403 5.403 17 C -0.353 4.353 18 H 0.105 0.895 19 C 0.059 3.941 20 N -0.826 5.826 21 Si 0.930 3.070 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.276 1.276 25 C 0.503 3.497 26 O -0.454 6.454 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.422 0.578 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 14.788 5.525 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 C -0.020 4.020 4 C -0.143 4.143 5 C -0.041 4.041 6 C -0.751 4.751 7 S 2.684 3.316 8 C -0.801 4.801 9 O -0.936 6.936 10 O -0.939 6.939 11 C -0.046 4.046 12 C -0.144 4.144 13 N -0.403 5.403 14 C 0.383 3.617 15 O -0.443 6.443 16 N -0.134 5.134 17 C -0.478 4.478 18 H 0.122 0.878 19 C -0.153 4.153 20 N -0.459 5.459 21 Si 0.755 3.245 22 H -0.189 1.189 23 H -0.205 1.205 24 H -0.202 1.202 25 C 0.289 3.711 26 O -0.325 6.325 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.265 0.735 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.937 15.101 5.025 16.032 hybrid contribution 0.571 -1.257 -0.074 1.383 sum 2.508 13.843 4.951 14.914 Atomic orbital electron populations 1.21871 0.90304 1.04026 1.03022 1.20357 0.96587 0.89358 0.88106 1.20023 0.94102 0.93772 0.94112 1.21683 0.98411 0.94663 0.99548 1.20934 0.92744 0.93885 0.96514 1.30428 1.20090 1.24970 0.99645 1.04980 0.77665 0.74370 0.74572 1.30229 1.25530 1.11922 1.12375 1.93585 1.78293 1.76121 1.45650 1.93571 1.79964 1.76836 1.43519 1.20813 0.93621 0.93731 0.96475 1.20989 1.00800 0.94841 0.97750 1.45631 1.56693 1.30350 1.07584 1.16408 0.80069 0.81533 0.83737 1.90829 1.49685 1.41943 1.61827 1.41793 1.43991 1.23384 1.04262 1.19430 1.06756 1.20782 1.00868 0.87761 1.25329 0.95350 0.95854 0.98764 1.69904 1.11486 1.41094 1.23378 0.85841 0.80220 0.78369 0.80030 1.18941 1.20503 1.20163 1.19776 0.81940 0.81160 0.88267 1.90565 1.57620 1.68231 1.16106 0.91511 0.90286 0.90637 0.82654 0.83930 0.84821 0.85189 0.84953 0.84122 0.85180 0.73533 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.97 37.16 0.33 -1.70 16 2 C 0.15 2.60 1.16 -133.25 -0.16 2.45 16 3 C -0.02 -0.29 4.88 -104.62 -0.51 -0.80 16 4 C -0.12 -1.93 9.18 -39.59 -0.36 -2.29 16 5 C -0.02 -0.28 9.47 -39.58 -0.37 -0.66 16 6 C -0.66 -7.61 5.66 -39.58 -0.22 -7.83 16 7 S 2.50 23.27 5.80 -107.50 -0.62 22.65 16 8 C -0.65 -3.57 10.79 101.05 1.09 -2.48 16 9 O -0.94 -11.69 17.13 -57.54 -0.99 -12.67 16 10 O -0.94 -11.23 17.13 -57.54 -0.99 -12.22 16 11 C -0.03 -0.31 9.47 -39.58 -0.37 -0.69 16 12 C -0.12 -1.58 9.35 -39.58 -0.37 -1.95 16 13 N -0.74 -12.89 5.29 -54.03 -0.29 -13.18 16 14 C 0.68 15.82 8.57 -88.02 -0.75 15.07 16 15 O -0.57 -14.70 17.62 5.34 0.09 -14.61 16 16 N -0.40 -10.23 2.69 -65.57 -0.18 -10.41 16 17 C -0.35 -9.66 9.46 -14.76 -0.14 -9.80 16 18 H 0.10 2.86 7.91 -52.48 -0.41 2.44 16 19 C 0.06 1.56 4.83 -17.50 -0.08 1.47 16 20 N -0.83 -22.68 11.19 55.49 0.62 -22.06 16 21 Si 0.93 20.48 29.59 -169.99 -5.03 15.45 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.50 11.63 5.79 -10.56 -0.06 11.57 16 26 O -0.45 -11.42 13.33 5.59 0.07 -11.34 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.16 2.68 5.77 -52.48 -0.30 2.38 16 31 H 0.14 1.57 7.57 -52.49 -0.40 1.17 16 32 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.14 1.25 7.57 -52.49 -0.40 0.85 16 36 H 0.13 1.35 6.95 -52.48 -0.36 0.98 16 37 H 0.42 5.76 8.10 -40.82 -0.33 5.43 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -37.04 339.69 -8.05 -45.09 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.88 Total: 5.82 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.99 Total: 2.36 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.16 Total: -45.65 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.80 Total: -50.84 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: 23.27 SS G_CDS: -0.62 Total: 22.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.04 -8.05 -45.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040543435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.677 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds