Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 117.00091 * 2 1 4 4 C 1.38565 * 120.06969 * 0.24711 * 3 2 1 5 5 C 1.38242 * 119.99432 * 180.29642 * 4 3 2 6 6 C 1.50703 * 119.92591 * 179.73046 * 5 4 3 7 7 C 1.38254 * 120.14674 * 359.45408 * 5 4 3 8 8 C 1.50699 * 119.92556 * 180.25084 * 7 5 4 9 9 H 1.09004 * 109.47190 * 324.99874 * 8 7 5 10 10 C 1.53002 * 109.47245 * 85.00195 * 8 7 5 11 11 N 1.46497 * 109.47190 * 205.00261 * 8 7 5 12 12 C 1.34783 * 120.00359 * 154.99749 * 11 8 7 13 13 O 1.21282 * 119.99497 * 0.02562 * 12 11 8 14 14 C 1.50694 * 120.00473 * 179.97438 * 12 11 8 15 15 S 1.80996 * 109.47306 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00071 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00153 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00088 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47464 * 119.99626 * 20 18 16 23 23 H 1.48500 * 109.46911 * 239.99915 * 20 18 16 24 24 C 1.38240 * 120.14887 * 0.27904 * 7 5 4 25 25 C 1.38561 * 119.99446 * 359.97438 * 24 7 5 26 26 O 1.36002 * 120.06871 * 179.97438 * 25 24 7 27 27 C 1.42894 * 117.00119 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47000 * 299.99503 * 1 2 3 30 30 H 1.08998 * 109.47184 * 60.00221 * 1 2 3 31 31 H 1.07997 * 120.00295 * 0.04715 * 4 3 2 32 32 H 1.09002 * 109.47152 * 269.72650 * 6 5 4 33 33 H 1.09001 * 109.46980 * 149.72750 * 6 5 4 34 34 H 1.09004 * 109.47113 * 29.72731 * 6 5 4 35 35 H 1.09002 * 109.46681 * 60.00180 * 10 8 7 36 36 H 1.08995 * 109.47141 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47217 * 300.00175 * 10 8 7 38 38 H 0.96999 * 120.00232 * 335.00021 * 11 8 7 39 39 H 1.09003 * 109.46928 * 300.00750 * 14 12 11 40 40 H 1.09003 * 109.46911 * 59.99831 * 14 12 11 41 41 H 0.97009 * 120.00265 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.00314 * 179.97438 * 24 7 5 43 43 H 1.09004 * 109.47010 * 180.02562 * 27 26 25 44 44 H 1.09006 * 109.46850 * 299.99738 * 27 26 25 45 45 H 1.09000 * 109.47667 * 59.99587 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 0.0052 5 6 1.9224 3.6057 -0.0010 6 6 1.1016 4.8696 -0.0015 7 6 3.3030 3.6798 -0.0010 8 6 3.9837 5.0242 -0.0021 9 1 3.3968 5.7282 -0.5922 10 6 4.1019 5.5372 1.4346 11 7 5.3211 4.8940 -0.5856 12 6 5.9157 5.9622 -1.1531 13 8 5.3437 7.0313 -1.1802 14 6 7.2917 5.8284 -1.7529 15 16 7.8126 7.4241 -2.4298 16 6 9.4043 6.9894 -3.0480 17 1 9.7679 5.9782 -2.9398 18 6 10.1912 7.9466 -3.6731 19 7 9.7482 9.1792 -3.8046 20 14 11.8790 7.4859 -4.3279 21 1 12.1402 6.0496 -4.0561 22 1 11.9254 7.7294 -5.7920 23 1 12.9133 8.3126 -3.6556 24 6 4.0603 2.5233 -0.0006 25 6 3.4359 1.2864 0.0003 26 8 4.1796 0.1476 0.0002 27 6 5.6003 0.3006 -0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2147 2.3196 0.0100 32 1 0.9038 5.1739 -1.0293 33 1 1.6502 5.6592 0.5120 34 1 0.1573 4.6898 0.5124 35 1 4.6888 4.8333 2.0245 36 1 4.5946 6.5094 1.4338 37 1 3.1068 5.6341 1.8688 38 1 5.7787 4.0390 -0.5637 39 1 7.9951 5.5140 -0.9819 40 1 7.2699 5.0849 -2.5497 41 1 10.2981 9.8482 -4.2419 42 1 5.1386 2.5839 -0.0010 43 1 6.0716 -0.6823 -0.0008 44 1 5.9062 0.8503 -0.8906 45 1 5.9069 0.8506 0.8894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040548715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -87.202751 kcal Electronic energy + Delta-G solvation = -26824.903000 eV Core-core repulsion = 22934.671939 eV Total energy + Delta-G solvation = -3890.231061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07683 -39.46007 -38.69823 -37.86056 -34.97236 -32.49570 -32.43754 -31.43409 -29.73397 -28.64423 -28.13406 -27.53125 -26.18075 -25.49434 -23.49075 -22.26382 -20.97478 -20.12760 -18.68975 -17.87172 -17.29865 -17.09713 -16.36068 -16.22824 -15.84288 -15.51506 -15.02131 -14.89713 -14.81362 -14.72066 -14.26934 -14.16107 -13.95402 -13.57009 -13.33636 -13.07155 -12.79870 -12.63666 -12.57911 -12.51904 -12.26799 -11.96183 -11.86184 -11.61768 -11.46393 -11.39329 -11.07990 -11.02901 -10.95152 -10.81240 -10.74927 -9.81659 -9.42088 -9.09100 -8.99977 -8.91162 -8.24295 -7.93585 -6.50764 -6.22726 -3.93117 0.97603 1.11074 2.95404 3.01023 3.01589 3.07656 3.20836 3.27099 3.31122 3.37743 3.70124 4.19315 4.34412 4.39796 4.59222 4.75671 4.82841 4.83391 4.91111 4.94029 5.02393 5.06499 5.12564 5.15874 5.22090 5.24944 5.26686 5.27740 5.41793 5.44511 5.52468 5.63335 5.75316 5.79790 5.86849 5.88539 6.02355 6.11867 6.14798 6.30535 6.38551 6.66176 6.76783 7.29424 7.58868 7.66619 8.34414 8.58810 9.22814 10.84702 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.002406 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.091735 B =11635.926887 C =12761.225016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.099 3.901 4 C -0.168 4.168 5 C -0.071 4.071 6 C -0.120 4.120 7 C -0.082 4.082 8 C 0.186 3.814 9 H 0.101 0.899 10 C -0.159 4.159 11 N -0.735 5.735 12 C 0.534 3.466 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.164 4.164 25 C 0.100 3.900 26 O -0.307 6.307 27 C 0.023 3.977 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 -18.401 10.812 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.053 3.947 4 C -0.187 4.187 5 C -0.071 4.071 6 C -0.177 4.177 7 C -0.083 4.083 8 C 0.081 3.919 9 H 0.119 0.881 10 C -0.217 4.217 11 N -0.391 5.391 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.183 4.183 25 C 0.054 3.946 26 O -0.221 6.221 27 C -0.072 4.072 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.741 -16.815 10.699 27.357 hybrid contribution 2.012 -1.752 -0.404 2.698 sum -16.729 -18.567 10.295 27.029 Atomic orbital electron populations 1.23060 0.78646 1.03928 1.01236 1.86171 1.20944 1.25891 1.89086 1.18198 0.89078 0.85162 1.02230 1.20891 0.99814 0.90741 1.07257 1.19365 0.92664 0.94877 1.00237 1.20895 0.99178 0.94624 1.02980 1.19530 0.92986 0.94245 1.01524 1.19690 0.83709 0.93244 0.95234 0.88098 1.22187 1.02344 1.02188 0.95015 1.46222 1.18123 1.13212 1.61547 1.20306 0.87344 0.83473 0.76847 1.90696 1.65005 1.26765 1.56426 1.23540 0.95340 1.08254 1.03353 1.85395 1.19756 1.04698 1.73361 1.22902 1.02303 0.99123 1.43965 0.90905 1.24995 0.98788 0.94477 0.95368 1.70028 1.37335 1.02039 1.40855 0.86117 0.82205 0.78588 0.78585 1.19638 1.20558 1.20566 1.20763 1.00155 0.90574 1.06798 1.18139 0.88246 0.85949 1.02252 1.86164 1.18742 1.28109 1.89038 1.23117 0.78488 1.04088 1.01489 0.88261 0.92735 0.92689 0.84607 0.90659 0.90621 0.91440 0.92405 0.91113 0.91533 0.77049 0.89244 0.89263 0.92234 0.84796 0.88064 0.92441 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.28 -34.23 -0.35 -3.68 16 3 C 0.10 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.17 -1.60 8.69 -39.46 -0.34 -1.94 16 5 C -0.07 -0.71 5.88 -104.61 -0.62 -1.32 16 6 C -0.12 -0.98 9.21 36.01 0.33 -0.65 16 7 C -0.08 -0.90 5.06 -104.62 -0.53 -1.43 16 8 C 0.19 2.29 2.09 -69.08 -0.14 2.15 16 9 H 0.10 1.39 6.42 -51.93 -0.33 1.06 16 10 C -0.16 -1.79 9.27 37.16 0.34 -1.45 16 11 N -0.74 -10.03 4.99 -54.93 -0.27 -10.31 16 12 C 0.53 9.84 7.81 -10.99 -0.09 9.76 16 13 O -0.52 -11.40 15.52 5.56 0.09 -11.31 16 14 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 C -0.16 -1.75 8.22 -39.46 -0.32 -2.08 16 25 C 0.10 1.16 6.70 -39.12 -0.26 0.90 16 26 O -0.31 -3.53 10.28 -34.25 -0.35 -3.88 16 27 C 0.02 0.18 9.81 101.05 0.99 1.17 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 31 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.63 5.41 -51.93 -0.28 0.35 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 38 H 0.39 4.36 6.20 -40.82 -0.25 4.11 16 39 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.13 1.21 4.31 -52.49 -0.23 0.98 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 45 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -35.83 383.52 -7.40 -43.23 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.30 Total: 1.61 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 0.51 Total: -8.62 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.46 Total: -35.63 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.62 Total: -18.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.83 -7.40 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040548715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.974 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds