Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35996 * 117.00121 * 2 1 4 4 C 1.38564 * 120.07138 * 359.71810 * 3 2 1 5 5 C 1.38240 * 120.00142 * 179.74643 * 4 3 2 6 6 C 1.50701 * 119.93291 * 180.25701 * 5 4 3 7 7 C 1.38256 * 120.14041 * 0.51693 * 5 4 3 8 8 C 1.50707 * 119.92649 * 179.74462 * 7 5 4 9 9 H 1.08998 * 109.47101 * 33.25220 * 8 7 5 10 10 C 1.53001 * 109.46968 * 273.25551 * 8 7 5 11 11 N 1.46493 * 109.47175 * 153.25045 * 8 7 5 12 12 C 1.34781 * 120.00062 * 209.31843 * 11 8 7 13 13 O 1.21280 * 119.99865 * 0.02562 * 12 11 8 14 14 C 1.50699 * 120.00164 * 180.02562 * 12 11 8 15 15 S 1.80995 * 109.47090 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00060 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99923 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00257 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99818 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47217 * 90.00607 * 20 18 16 22 22 H 1.48502 * 109.47398 * 210.00005 * 20 18 16 23 23 H 1.48498 * 109.47399 * 330.00291 * 20 18 16 24 24 C 1.38242 * 120.15077 * 359.75793 * 7 5 4 25 25 C 1.38568 * 119.99385 * 359.97438 * 24 7 5 26 26 O 1.35997 * 120.06637 * 179.97438 * 25 24 7 27 27 C 1.42899 * 117.00467 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46666 * 300.00357 * 1 2 3 29 29 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46774 * 60.00627 * 1 2 3 31 31 H 1.08008 * 120.00191 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47004 * 270.25815 * 6 5 4 33 33 H 1.09002 * 109.46429 * 30.25084 * 6 5 4 34 34 H 1.08988 * 109.47197 * 150.25499 * 6 5 4 35 35 H 1.08998 * 109.46938 * 299.99768 * 10 8 7 36 36 H 1.08995 * 109.47410 * 59.99446 * 10 8 7 37 37 H 1.08997 * 109.46942 * 179.97438 * 10 8 7 38 38 H 0.97001 * 120.00530 * 29.32731 * 11 8 7 39 39 H 1.08994 * 109.47221 * 300.00749 * 14 12 11 40 40 H 1.09008 * 109.46832 * 60.00285 * 14 12 11 41 41 H 0.96998 * 119.99677 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.00169 * 179.97438 * 24 7 5 43 43 H 1.09009 * 109.46765 * 60.00195 * 27 26 25 44 44 H 1.09003 * 109.47223 * 179.97438 * 27 26 25 45 45 H 1.08995 * 109.47333 * 299.99983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0059 5 6 1.9224 3.6057 -0.0006 6 6 1.1017 4.8696 -0.0012 7 6 3.3029 3.6798 -0.0002 8 6 3.9838 5.0243 -0.0002 9 1 3.3810 5.7368 0.5630 10 6 4.1415 5.5160 -1.4404 11 7 5.3045 4.9029 0.6219 12 6 5.8456 5.9562 1.2655 13 8 5.2390 7.0044 1.3301 14 6 7.2045 5.8315 1.9049 15 16 7.6509 7.4028 2.6845 16 6 9.2351 6.9838 3.3323 17 1 9.6348 5.9918 3.1821 18 6 9.9697 7.9289 4.0348 19 7 9.4828 9.1382 4.2175 20 14 11.6488 7.4845 4.7222 21 1 12.6935 7.7874 3.7113 22 1 11.9057 8.2763 5.9520 23 1 11.6821 6.0365 5.0499 24 6 4.0603 2.5233 0.0000 25 6 3.4359 1.2863 0.0002 26 8 4.1796 0.1477 -0.0001 27 6 5.6003 0.3006 -0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 0.2146 2.3196 -0.0109 32 1 0.9041 5.1741 -1.0290 33 1 0.1572 4.6897 0.5123 34 1 1.6500 5.6591 0.5126 35 1 4.7442 4.8036 -2.0036 36 1 3.1588 5.6063 -1.9033 37 1 4.6335 6.4886 -1.4404 38 1 5.7897 4.0645 0.5705 39 1 7.1801 5.0457 2.6599 40 1 7.9429 5.5807 1.1432 41 1 9.9960 9.7985 4.7088 42 1 5.1386 2.5840 -0.0001 43 1 5.9067 0.8502 0.8900 44 1 6.0716 -0.6823 -0.0001 45 1 5.9065 0.8506 -0.8901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040548718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -86.868482 kcal Electronic energy + Delta-G solvation = -26829.383580 eV Core-core repulsion = 22939.167015 eV Total energy + Delta-G solvation = -3890.216566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06587 -39.45475 -38.69290 -37.84900 -34.97657 -32.46485 -32.43464 -31.44626 -29.72132 -28.62165 -28.17794 -27.52693 -26.13954 -25.49199 -23.52847 -22.24711 -20.94650 -20.16253 -18.68600 -17.86920 -17.28157 -17.09571 -16.35575 -16.22953 -15.83439 -15.51055 -15.00706 -14.90053 -14.81052 -14.71613 -14.35110 -14.13026 -13.93520 -13.58648 -13.25677 -13.09014 -12.82705 -12.62931 -12.57702 -12.53779 -12.12127 -12.04083 -11.90499 -11.64098 -11.45929 -11.38911 -11.07028 -11.03339 -10.88284 -10.82669 -10.75215 -9.82468 -9.42348 -9.08168 -8.99444 -8.89986 -8.24645 -7.93941 -6.50635 -6.22409 -3.92895 0.98299 1.12342 2.96057 3.01318 3.01989 3.07481 3.21713 3.27086 3.30731 3.38615 3.70201 4.19651 4.35273 4.41212 4.60032 4.74766 4.82784 4.83560 4.90208 4.94198 5.01223 5.07157 5.12760 5.16434 5.22264 5.24860 5.27667 5.30873 5.42896 5.43811 5.54926 5.62229 5.74786 5.78884 5.87057 5.90170 6.01438 6.11933 6.13689 6.33002 6.39701 6.66442 6.77232 7.30081 7.58731 7.66578 8.34403 8.58671 9.22960 10.84995 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.002415 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.820427 B =11589.127399 C =12666.682940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.099 3.901 4 C -0.168 4.168 5 C -0.071 4.071 6 C -0.119 4.119 7 C -0.082 4.082 8 C 0.183 3.817 9 H 0.105 0.895 10 C -0.157 4.157 11 N -0.735 5.735 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.163 4.163 25 C 0.099 3.901 26 O -0.307 6.307 27 C 0.023 3.977 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.134 0.866 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 -18.220 -12.041 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.053 3.947 4 C -0.187 4.187 5 C -0.072 4.072 6 C -0.176 4.176 7 C -0.083 4.083 8 C 0.078 3.922 9 H 0.123 0.877 10 C -0.215 4.215 11 N -0.390 5.390 12 C 0.321 3.679 13 O -0.390 6.390 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.182 4.182 25 C 0.054 3.946 26 O -0.221 6.221 27 C -0.072 4.072 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.004 -16.669 -11.844 27.245 hybrid contribution 2.066 -1.720 0.346 2.711 sum -15.939 -18.389 -11.498 26.915 Atomic orbital electron populations 1.23062 0.78648 1.03921 1.01237 1.86171 1.20944 1.25897 1.89090 1.18197 0.89080 0.85159 1.02226 1.20890 0.99812 0.90747 1.07266 1.19363 0.92696 0.94868 1.00256 1.20885 0.99310 0.94718 1.02657 1.19543 0.92990 0.94301 1.01495 1.19766 0.84206 0.93436 0.94776 0.87689 1.22148 1.02321 1.02082 0.94963 1.46207 1.19514 1.15391 1.57924 1.20311 0.87348 0.83152 0.77134 1.90694 1.62304 1.27719 1.58243 1.23540 0.95576 1.08160 1.03211 1.85392 1.22026 1.07807 1.67959 1.22863 1.03498 1.01188 1.40813 0.90957 1.24993 0.98671 0.94485 0.95463 1.70019 1.37784 1.03525 1.38933 0.86168 0.82343 0.78526 0.78460 1.20273 1.20745 1.19713 1.20760 1.00138 0.90559 1.06744 1.18141 0.88245 0.85952 1.02275 1.86162 1.18732 1.28123 1.89046 1.23114 0.78503 1.04070 1.01476 0.92685 0.88265 0.92739 0.84619 0.90790 0.91461 0.90507 0.92458 0.91606 0.91268 0.77078 0.89261 0.89236 0.92182 0.84832 0.92438 0.88080 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.36 10.28 -34.23 -0.35 -3.71 16 3 C 0.10 1.12 6.70 -39.13 -0.26 0.86 16 4 C -0.17 -1.62 8.69 -39.46 -0.34 -1.96 16 5 C -0.07 -0.72 5.88 -104.61 -0.62 -1.33 16 6 C -0.12 -0.99 9.58 36.01 0.35 -0.64 16 7 C -0.08 -0.91 5.05 -104.61 -0.53 -1.44 16 8 C 0.18 2.24 2.38 -69.08 -0.16 2.08 16 9 H 0.11 1.45 5.37 -51.93 -0.28 1.17 16 10 C -0.16 -1.73 9.50 37.16 0.35 -1.38 16 11 N -0.73 -10.01 4.95 -54.93 -0.27 -10.28 16 12 C 0.53 9.85 7.84 -10.98 -0.09 9.76 16 13 O -0.52 -11.42 15.45 5.56 0.09 -11.33 16 14 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 17 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.16 -1.75 8.23 -39.46 -0.32 -2.07 16 25 C 0.10 1.16 6.70 -39.12 -0.26 0.90 16 26 O -0.31 -3.54 10.28 -34.23 -0.35 -3.90 16 27 C 0.02 0.18 9.81 101.05 0.99 1.17 16 28 H 0.05 0.30 7.68 -51.93 -0.40 -0.10 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.14 0.96 6.30 -52.48 -0.33 0.63 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.08 0.71 5.98 -51.94 -0.31 0.40 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 4.34 6.33 -40.82 -0.26 4.08 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 42 H 0.13 1.20 4.37 -52.49 -0.23 0.97 16 43 H 0.06 0.41 7.66 -51.92 -0.40 0.01 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -35.85 385.29 -7.41 -43.27 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.34 Total: 1.59 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 0.52 Total: -8.64 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.46 Total: -35.62 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.62 Total: -18.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.85 -7.41 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040548718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.599 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds