Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86805 * 119.99664 * 2 1 4 4 H 1.48503 * 109.46869 * 233.99829 * 3 2 1 5 5 H 1.48494 * 109.47271 * 353.99417 * 3 2 1 6 6 H 1.48502 * 109.47011 * 114.00167 * 3 2 1 7 7 C 1.39021 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99636 * 12.38997 * 7 2 1 9 9 N 1.36897 * 120.00146 * 192.66892 * 7 2 1 10 10 C 1.46505 * 119.99611 * 48.35029 * 9 7 2 11 11 C 1.50705 * 109.47139 * 97.57024 * 10 9 7 12 12 C 1.38227 * 119.99770 * 274.98057 * 11 10 9 13 13 C 1.38241 * 120.00010 * 179.76622 * 12 11 10 14 14 C 1.38234 * 119.99432 * 0.48183 * 13 12 11 15 15 C 1.38231 * 120.00385 * 359.79826 * 14 13 12 16 16 C 1.38233 * 119.99898 * 359.94778 * 15 14 13 17 17 C 1.34771 * 120.00087 * 228.34921 * 9 7 2 18 18 O 1.21621 * 119.99914 * 183.29987 * 17 9 7 19 19 C 1.47497 * 120.00169 * 3.30126 * 17 9 7 20 20 C 1.39774 * 120.10220 * 26.79158 * 19 17 9 21 21 C 1.37701 * 119.95868 * 179.76522 * 20 19 17 22 22 C 1.39027 * 120.27746 * 0.57640 * 21 20 19 23 23 C 1.39282 * 120.05287 * 359.61593 * 22 21 20 24 24 C 1.38270 * 119.96783 * 0.11973 * 23 22 21 25 25 O 1.36149 * 120.75936 * 180.26441 * 23 22 21 26 26 C 1.43165 * 116.71100 * 342.86428 * 25 23 22 27 27 C 1.53464 * 108.23937 * 46.13940 * 26 25 23 28 28 O 1.35969 * 119.23636 * 179.53218 * 22 21 20 29 29 H 0.97005 * 120.00272 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46751 * 217.56661 * 10 9 7 31 31 H 1.08997 * 109.47457 * 337.56464 * 10 9 7 32 32 H 1.08001 * 120.00549 * 359.97438 * 12 11 10 33 33 H 1.08000 * 120.00296 * 180.25778 * 13 12 11 34 34 H 1.08003 * 119.99660 * 179.76619 * 14 13 12 35 35 H 1.07998 * 120.00044 * 179.97438 * 15 14 13 36 36 H 1.08003 * 120.00013 * 180.02562 * 16 15 14 37 37 H 1.07992 * 120.02025 * 0.02894 * 20 19 17 38 38 H 1.08004 * 119.86096 * 180.29342 * 21 20 19 39 39 H 1.08003 * 120.02664 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.71734 * 165.83044 * 26 25 23 41 41 H 1.09006 * 109.70702 * 286.45913 * 26 25 23 42 42 H 1.09001 * 109.70902 * 59.86851 * 27 26 25 43 43 H 1.08999 * 109.71229 * 180.49120 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.2080 1.6350 -1.1327 5 1 1.2894 2.7426 -0.1465 6 1 2.9884 1.7618 1.2790 7 6 2.0090 -1.2039 -0.0005 8 1 1.4878 -2.1283 -0.2016 9 7 3.3529 -1.2185 0.2595 10 6 3.8830 -0.4926 1.4164 11 6 4.0712 -1.4485 2.5661 12 6 3.0104 -1.7404 3.4029 13 6 3.1818 -2.6210 4.4547 14 6 4.4165 -3.2020 4.6755 15 6 5.4788 -2.9056 3.8421 16 6 5.3061 -2.0291 2.7872 17 6 4.1883 -1.9005 -0.5488 18 8 5.3738 -1.9633 -0.2844 19 6 3.6650 -2.5707 -1.7539 20 6 2.5112 -2.0890 -2.3788 21 6 2.0279 -2.7140 -3.5066 22 6 2.6761 -3.8312 -4.0210 23 6 3.8240 -4.3187 -3.4009 24 6 4.3178 -3.6926 -2.2713 25 8 4.4732 -5.4085 -3.8956 26 6 3.7428 -6.2322 -4.8108 27 6 3.0554 -5.3194 -5.8351 28 8 2.1751 -4.4376 -5.1301 29 1 -0.4851 0.8401 0.0004 30 1 4.8419 -0.0444 1.1559 31 1 3.1826 0.2907 1.7060 32 1 2.0469 -1.2831 3.2331 33 1 2.3519 -2.8523 5.1060 34 1 4.5513 -3.8871 5.4994 35 1 6.4436 -3.3592 4.0149 36 1 6.1360 -1.7979 2.1359 37 1 2.0015 -1.2245 -1.9798 38 1 1.1390 -2.3376 -3.9908 39 1 5.2076 -4.0702 -1.7894 40 1 4.4268 -6.9093 -5.3224 41 1 2.9920 -6.8074 -4.2689 42 1 3.8056 -4.7383 -6.3715 43 1 2.4839 -5.9229 -6.5403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040555773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -30.674418 kcal Electronic energy + Delta-G solvation = -29320.267435 eV Core-core repulsion = 25297.043676 eV Total energy + Delta-G solvation = -4023.223760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.95757 -39.49589 -38.33560 -37.02427 -36.61273 -35.13029 -32.38860 -31.41818 -30.59497 -30.35161 -30.17909 -28.29747 -25.92050 -25.28765 -24.37764 -22.49070 -22.00169 -21.24390 -20.81752 -19.35471 -18.43995 -17.63558 -17.02907 -16.88624 -16.21759 -15.76594 -15.36714 -14.95853 -14.83654 -14.74577 -14.36907 -14.21630 -14.09268 -13.96456 -13.43169 -13.38603 -13.20525 -12.89832 -12.79133 -12.66865 -12.37280 -12.08508 -11.85434 -11.56675 -11.37052 -11.14942 -10.94693 -10.80600 -10.67326 -10.48818 -10.25750 -10.18985 -9.87948 -9.25756 -8.82333 -8.38740 -8.19768 -8.18126 -7.79682 -7.62901 -6.58859 -4.28974 1.47173 1.83800 1.86767 1.94168 2.95722 3.13172 3.17524 3.20446 3.37816 3.62726 3.99833 4.14310 4.30681 4.42100 4.61432 4.80656 4.84127 4.88979 4.92646 5.23991 5.36396 5.38418 5.43301 5.48848 5.66237 5.70584 5.76376 5.84411 5.91998 6.06798 6.11878 6.20028 6.28274 6.35198 6.53061 6.54528 6.61001 6.72458 6.97614 6.98406 7.08989 7.13547 7.23117 7.28686 7.32958 7.53901 7.73043 7.95782 8.16060 8.80363 9.17004 9.53902 10.48758 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.004274 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.702061 B = 6549.930704 C = 8154.781554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.067 3.933 3 Si 0.866 3.134 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.340 4.340 8 H 0.106 0.894 9 N -0.456 5.456 10 C 0.124 3.876 11 C -0.085 4.085 12 C -0.094 4.094 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.096 4.096 17 C 0.533 3.467 18 O -0.584 6.584 19 C -0.103 4.103 20 C -0.054 4.054 21 C -0.135 4.135 22 C 0.059 3.941 23 C 0.021 3.979 24 C -0.067 4.067 25 O -0.310 6.310 26 C 0.022 3.978 27 C 0.021 3.979 28 O -0.309 6.309 29 H 0.279 0.721 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.181 0.819 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -6.421 -3.590 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.141 4.141 3 Si 0.693 3.307 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.124 0.876 9 N -0.176 5.176 10 C 0.002 3.998 11 C -0.086 4.086 12 C -0.113 4.113 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.151 4.151 16 C -0.114 4.114 17 C 0.324 3.676 18 O -0.468 6.468 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.154 4.154 22 C 0.014 3.986 23 C -0.023 4.023 24 C -0.087 4.087 25 O -0.226 6.226 26 C -0.054 4.054 27 C -0.055 4.055 28 O -0.224 6.224 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.198 0.802 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.382 -6.345 -3.495 8.466 hybrid contribution 0.118 0.428 -0.176 0.478 sum 4.501 -5.916 -3.671 8.290 Atomic orbital electron populations 1.69672 1.06032 1.28550 1.44673 1.25481 0.95220 0.98461 0.94954 0.87324 0.80174 0.82960 0.80265 1.18577 1.21088 1.18164 1.19073 0.81363 0.95671 1.50602 0.87639 1.43514 1.07283 1.46410 1.20359 1.21118 1.00113 0.93579 0.84988 1.20301 0.93375 0.98949 0.95978 1.21160 0.98767 0.97374 0.93953 1.21061 0.97050 0.98253 0.98569 1.21017 0.93559 1.00499 0.99752 1.21048 0.98573 0.99288 0.96227 1.21221 0.97558 0.96130 0.96522 1.18176 0.85211 0.81582 0.82669 1.90626 1.16217 1.64918 1.75063 1.19627 0.96788 0.96740 0.97406 1.22471 0.93008 1.00642 0.91102 1.20531 1.02141 0.94194 0.98497 1.19189 0.95501 0.95313 0.88622 1.18572 0.95733 0.91108 0.96855 1.20384 1.00437 0.95238 0.92654 1.86295 1.39960 1.36038 1.60260 1.23528 0.97668 0.92800 0.91442 1.23555 0.94872 0.92762 0.94306 1.86257 1.39415 1.58796 1.37909 0.91086 0.91088 0.88778 0.85637 0.86689 0.86988 0.86847 0.85647 0.80213 0.84931 0.84676 0.86620 0.90852 0.90794 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.47 13.95 55.50 0.77 -20.69 16 2 C 0.07 1.61 4.81 -17.45 -0.08 1.52 16 3 Si 0.87 18.58 26.00 -169.99 -4.42 14.17 16 4 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.18 5.52 56.52 0.31 -4.87 16 7 C -0.34 -8.10 6.25 -15.00 -0.09 -8.19 16 8 H 0.11 2.75 7.22 -52.49 -0.38 2.37 16 9 N -0.46 -10.44 2.01 -117.29 -0.24 -10.67 16 10 C 0.12 2.64 3.82 -5.19 -0.02 2.62 16 11 C -0.08 -1.69 5.37 -104.62 -0.56 -2.25 16 12 C -0.09 -1.77 9.72 -39.58 -0.38 -2.15 16 13 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 14 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 15 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 16 C -0.10 -1.80 9.13 -39.58 -0.36 -2.16 16 17 C 0.53 12.40 7.36 -12.49 -0.09 12.31 16 18 O -0.58 -14.20 15.18 5.26 0.08 -14.12 16 19 C -0.10 -2.20 5.60 -104.99 -0.59 -2.79 16 20 C -0.05 -1.11 8.04 -39.20 -0.32 -1.43 16 21 C -0.13 -2.49 9.94 -39.49 -0.39 -2.88 16 22 C 0.06 1.04 6.51 -38.90 -0.25 0.79 16 23 C 0.02 0.39 6.49 -39.18 -0.25 0.14 16 24 C -0.07 -1.34 9.50 -39.01 -0.37 -1.72 16 25 O -0.31 -4.97 10.41 -32.96 -0.34 -5.31 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 C 0.02 0.23 7.26 37.40 0.27 0.50 16 28 O -0.31 -4.78 10.41 -32.39 -0.34 -5.11 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.07 1.48 7.62 -51.93 -0.40 1.09 16 31 H 0.09 1.99 3.84 -51.93 -0.20 1.79 16 32 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.40 7.44 -52.48 -0.39 2.01 16 37 H 0.18 3.97 4.85 -52.49 -0.25 3.71 16 38 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.14 2.67 7.87 -52.48 -0.41 2.26 16 40 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -28.28 354.89 -8.62 -36.90 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.06 Total: 12.22 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -4.42 Total: -12.72 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.54 Total: -31.37 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.60 Total: -24.54 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.42 Total: 14.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.28 -8.62 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040555773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.223 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds