Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99561 * 2 1 4 4 O 1.20818 * 120.00257 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99561 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47505 * 300.00305 * 5 3 2 7 7 C 1.50706 * 109.47206 * 60.00124 * 5 3 2 8 8 C 1.38233 * 120.00576 * 99.99910 * 7 5 3 9 9 C 1.38226 * 120.00954 * 179.97438 * 8 7 5 10 10 C 1.38258 * 120.03088 * 0.03854 * 9 8 7 11 11 C 1.38201 * 120.00968 * 359.97438 * 10 9 8 12 12 C 1.38332 * 120.00440 * 279.72940 * 7 5 3 13 13 Cl 1.73603 * 120.01499 * 359.96684 * 12 7 5 14 14 N 1.46897 * 109.46893 * 179.97438 * 5 3 2 15 15 C 1.46897 * 110.99881 * 60.00341 * 14 5 3 16 16 C 1.53247 * 109.33862 * 187.25123 * 15 14 5 17 17 N 1.47074 * 108.51990 * 306.16776 * 16 15 14 18 18 C 1.36942 * 120.88247 * 231.18498 * 17 16 15 19 19 H 1.07998 * 119.99506 * 27.10384 * 18 17 16 20 20 C 1.38810 * 120.00248 * 207.10578 * 18 17 16 21 21 N 1.31616 * 119.99719 * 16.77842 * 20 18 17 22 22 Si 1.86790 * 120.00111 * 196.77894 * 20 18 17 23 23 H 1.48507 * 109.47240 * 270.00141 * 22 20 18 24 24 H 1.48502 * 109.47180 * 29.99920 * 22 20 18 25 25 H 1.48501 * 109.47458 * 149.99665 * 22 20 18 26 26 C 1.47078 * 118.23813 * 51.45896 * 17 16 15 27 27 C 1.46903 * 110.99973 * 184.30309 * 14 5 3 28 28 H 1.09007 * 109.46755 * 300.00083 * 1 2 3 29 29 H 1.08996 * 109.47467 * 59.99759 * 1 2 3 30 30 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99489 * 359.97438 * 8 7 5 32 32 H 1.07998 * 119.98244 * 180.02562 * 9 8 7 33 33 H 1.07992 * 119.99688 * 179.97438 * 10 9 8 34 34 H 1.07998 * 120.00791 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.49264 * 67.29243 * 15 14 5 36 36 H 1.09003 * 109.51682 * 307.22339 * 15 14 5 37 37 H 1.09000 * 109.62236 * 186.45985 * 16 15 14 38 38 H 1.08996 * 109.62383 * 65.88170 * 16 15 14 39 39 H 0.97008 * 119.99855 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.62879 * 68.24716 * 26 17 16 41 41 H 1.09001 * 109.63018 * 188.82828 * 26 17 16 42 42 H 1.09007 * 109.49038 * 292.70889 * 27 14 5 43 43 H 1.08997 * 109.49035 * 52.78790 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9564 0.7807 0.8890 7 6 4.1047 0.5921 -1.2315 8 6 4.4918 1.3434 -2.3253 9 6 4.9861 0.7171 -3.4541 10 6 5.0929 -0.6608 -3.4902 11 6 4.7058 -1.4130 -2.3973 12 6 4.2167 -0.7863 -1.2647 13 17 3.7380 -1.7299 0.1116 14 7 3.9827 2.6837 -0.0011 15 6 3.4749 3.3832 1.1867 16 6 3.7738 4.8809 1.0601 17 7 5.2125 5.0503 0.8063 18 6 5.9639 5.9077 1.5650 19 1 5.6696 6.1296 2.5802 20 6 7.1036 6.4915 1.0293 21 7 7.2895 6.4977 -0.2736 22 14 8.3734 7.2684 2.1576 23 1 8.0397 8.7003 2.3669 24 1 8.3714 6.5636 3.4648 25 1 9.7188 7.1590 1.5385 26 6 5.8217 4.2791 -0.2879 27 6 5.4434 2.8008 -0.1046 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.4081 2.4197 -2.2980 32 1 5.2889 1.3045 -4.3083 33 1 5.4788 -1.1496 -4.3725 34 1 4.7896 -2.4893 -2.4254 35 1 3.9635 2.9888 2.0777 36 1 2.3982 3.2325 1.2654 37 1 3.5031 5.3877 1.9863 38 1 3.2038 5.2990 0.2304 39 1 8.0862 6.9054 -0.6480 40 1 5.4448 4.6406 -1.2447 41 1 6.9057 4.3881 -0.2534 42 1 5.9046 2.4145 0.8045 43 1 5.7943 2.2277 -0.9627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043612015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -5.753621 kcal Electronic energy + Delta-G solvation = -28302.106355 eV Core-core repulsion = 24375.249055 eV Total energy + Delta-G solvation = -3926.857300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.87676 -39.40308 -37.90080 -36.43648 -36.26942 -34.67640 -32.28855 -30.95627 -30.53668 -29.87782 -28.45610 -27.12959 -25.16321 -23.15022 -22.68908 -22.44181 -21.89965 -20.38961 -19.15459 -17.67209 -17.18384 -16.72548 -16.62986 -16.34052 -15.69416 -15.33516 -14.77686 -14.29483 -14.20731 -14.03341 -13.92223 -13.69864 -13.35210 -13.31148 -13.02124 -12.93973 -12.66914 -12.16537 -12.03790 -11.67054 -11.55029 -11.36845 -11.32821 -11.06030 -10.84513 -10.77566 -10.70034 -10.60994 -10.44438 -10.16333 -10.02883 -9.72438 -9.53170 -8.80970 -8.73858 -8.49391 -7.97112 -6.64636 -5.77175 -3.17698 1.02076 1.19762 2.09107 2.29315 2.65845 3.38556 3.45552 3.47929 3.56539 4.14809 4.48046 4.51989 4.80001 4.85209 4.97130 5.05547 5.12136 5.21160 5.21700 5.39928 5.41812 5.45010 5.48785 5.56157 5.83929 5.89450 5.93363 6.10862 6.16806 6.20965 6.29304 6.33227 6.40286 6.45591 6.52892 6.73059 6.75280 6.98518 7.23714 7.37731 7.57210 7.65997 7.81531 7.88612 8.45019 9.22814 9.86035 10.44963 11.31875 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.003857 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.201662 B = 7257.234057 C = 8221.622348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.470 3.530 4 O -0.479 6.479 5 C 0.131 3.869 6 H 0.085 0.915 7 C -0.079 4.079 8 C -0.071 4.071 9 C -0.122 4.122 10 C -0.103 4.103 11 C -0.121 4.121 12 C -0.017 4.017 13 Cl -0.061 7.061 14 N -0.511 5.511 15 C 0.031 3.969 16 C 0.154 3.846 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.182 3.818 27 C 0.025 3.975 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.025 0.975 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -18.615 -4.632 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.311 3.689 4 O -0.364 6.364 5 C 0.022 3.978 6 H 0.102 0.898 7 C -0.081 4.081 8 C -0.089 4.089 9 C -0.141 4.141 10 C -0.121 4.121 11 C -0.140 4.140 12 C -0.044 4.044 13 Cl -0.032 7.032 14 N -0.237 5.237 15 C -0.097 4.097 16 C 0.027 3.973 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.206 1.206 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.103 4.103 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.865 -18.077 -4.977 20.739 hybrid contribution 0.809 -0.047 1.372 1.593 sum -8.055 -18.124 -3.605 20.158 Atomic orbital electron populations 1.23216 0.76930 1.03295 1.02400 1.86622 1.22774 1.32963 1.84157 1.23350 0.91176 0.81549 0.72799 1.90622 1.66391 1.35882 1.43507 1.20007 0.87732 0.93194 0.96908 0.89783 1.19236 1.01897 0.91115 0.95835 1.21399 0.94709 1.01938 0.90830 1.21331 0.99612 0.94635 0.98478 1.21156 0.98961 0.94078 0.97919 1.20946 1.00568 1.00372 0.92068 1.20776 1.02246 0.91024 0.90374 1.98367 1.90240 1.72057 1.42551 1.61825 1.13468 1.06502 1.41941 1.22980 1.00250 0.97672 0.88810 1.20923 0.86669 0.90958 0.98719 1.44168 1.02509 1.47572 1.37624 1.19188 1.05497 1.19736 0.93590 0.91691 1.25007 1.00680 0.98584 0.95376 1.70015 1.27811 1.47709 1.09347 0.86316 0.81195 0.79193 0.80184 1.21418 1.20593 1.21570 1.20939 0.99356 0.83779 0.90313 1.23354 0.84486 1.02636 0.99834 0.92076 0.92045 0.88403 0.82822 0.85041 0.85223 0.85028 0.95649 0.89517 0.92552 0.95355 0.93651 0.95418 0.89081 0.95228 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.59 8.36 -39.28 -0.33 -4.91 16 3 C 0.47 7.33 6.91 36.01 0.25 7.58 16 4 O -0.48 -8.56 13.60 -18.74 -0.25 -8.82 16 5 C 0.13 2.06 1.70 -70.02 -0.12 1.94 16 6 H 0.08 1.31 7.34 -51.93 -0.38 0.93 16 7 C -0.08 -1.13 4.36 -104.59 -0.46 -1.58 16 8 C -0.07 -0.98 7.24 -39.59 -0.29 -1.26 16 9 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 10 C -0.10 -1.01 10.05 -39.59 -0.40 -1.41 16 11 C -0.12 -1.27 9.83 -39.54 -0.39 -1.66 16 12 C -0.02 -0.21 6.14 -39.50 -0.24 -0.46 16 13 Cl -0.06 -0.73 25.61 -51.86 -1.33 -2.06 16 14 N -0.51 -9.33 3.47 -228.83 -0.79 -10.12 16 15 C 0.03 0.61 5.22 -3.70 -0.02 0.59 16 16 C 0.15 3.42 6.69 -3.60 -0.02 3.39 16 17 N -0.60 -15.15 3.03 -171.74 -0.52 -15.67 16 18 C -0.25 -6.92 9.63 -15.06 -0.14 -7.06 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 21 N -0.90 -26.02 11.15 55.49 0.62 -25.40 16 22 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.18 4.32 5.44 -3.37 -0.02 4.30 16 27 C 0.03 0.48 4.70 -3.46 -0.02 0.46 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.15 2.40 6.47 -52.49 -0.34 2.06 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.63 5.24 -51.93 -0.27 1.36 16 37 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.39 6.13 -51.93 -0.32 2.07 16 42 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.07 1.25 4.92 -51.93 -0.26 1.00 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -30.94 354.99 -9.32 -40.26 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.76 Total: 0.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.28 Total: 4.45 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.70 Total: -51.19 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.58 Total: -13.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.33 Total: -2.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.94 -9.32 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043612015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.511 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds