Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34223 * 116.99418 * 2 1 4 4 O 1.20823 * 120.00718 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99713 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46559 * 60.00128 * 5 3 2 7 7 C 1.50697 * 109.47118 * 300.00336 * 5 3 2 8 8 C 1.38233 * 120.00556 * 343.88125 * 7 5 3 9 9 C 1.38223 * 120.01337 * 180.02562 * 8 7 5 10 10 C 1.38267 * 120.02491 * 359.94935 * 9 8 7 11 11 C 1.38194 * 120.00847 * 0.03013 * 10 9 8 12 12 C 1.38334 * 120.00682 * 164.11643 * 7 5 3 13 13 Cl 1.73603 * 120.01007 * 0.03983 * 12 7 5 14 14 N 1.46898 * 109.46803 * 180.02562 * 5 3 2 15 15 C 1.46893 * 111.00448 * 60.89898 * 14 5 3 16 16 C 1.53236 * 109.34186 * 172.74380 * 15 14 5 17 17 N 1.47083 * 108.52331 * 53.83172 * 16 15 14 18 18 C 1.36937 * 120.88292 * 128.83507 * 17 16 15 19 19 H 1.07997 * 120.00040 * 328.96123 * 18 17 16 20 20 C 1.38813 * 119.99707 * 148.96213 * 18 17 16 21 21 N 1.31620 * 120.00085 * 164.71146 * 20 18 17 22 22 Si 1.86805 * 120.00055 * 344.71040 * 20 18 17 23 23 H 1.48501 * 109.47025 * 89.69623 * 22 20 18 24 24 H 1.48503 * 109.46964 * 209.69851 * 22 20 18 25 25 H 1.48501 * 109.46957 * 329.69832 * 22 20 18 26 26 C 1.47082 * 118.23428 * 308.81330 * 17 16 15 27 27 C 1.46900 * 111.00195 * 296.59192 * 14 5 3 28 28 H 1.09000 * 109.46584 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47148 * 299.99347 * 1 2 3 30 30 H 1.08994 * 109.47338 * 60.00035 * 1 2 3 31 31 H 1.08006 * 119.99625 * 359.97438 * 8 7 5 32 32 H 1.07997 * 119.98977 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.99329 * 180.02562 * 10 9 8 34 34 H 1.08007 * 119.99969 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.48924 * 292.70330 * 15 14 5 36 36 H 1.08996 * 109.49245 * 52.78119 * 15 14 5 37 37 H 1.08996 * 109.63075 * 294.11361 * 16 15 14 38 38 H 1.09002 * 109.62690 * 173.53740 * 16 15 14 39 39 H 0.97003 * 120.00044 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.62648 * 291.48120 * 26 17 16 41 41 H 1.08999 * 109.62803 * 170.89449 * 26 17 16 42 42 H 1.09005 * 109.49501 * 307.21573 * 27 14 5 43 43 H 1.09000 * 109.49157 * 67.27204 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9556 0.7810 -0.8908 7 6 4.1057 0.5915 1.2295 8 6 3.2655 0.3171 2.2923 9 6 3.7601 -0.3093 3.4208 10 6 5.0953 -0.6626 3.4869 11 6 5.9360 -0.3891 2.4247 12 6 5.4427 0.2431 1.2972 13 17 6.4999 0.5938 -0.0344 14 7 3.9827 2.6837 0.0002 15 6 3.4928 3.3769 1.1990 16 6 4.0958 4.7846 1.2533 17 7 3.8095 5.4649 -0.0190 18 6 3.2436 6.7117 -0.0375 19 1 2.5650 7.0085 0.7485 20 6 3.5420 7.5941 -1.0667 21 7 2.7911 8.6576 -1.2603 22 14 5.0095 7.2722 -2.1769 23 1 4.5826 6.4457 -3.3344 24 1 5.5536 8.5648 -2.6653 25 1 6.0589 6.5503 -1.4133 26 6 4.1477 4.7706 -1.2707 27 6 3.5427 3.3634 -1.2256 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2225 0.5929 2.2413 32 1 3.1035 -0.5231 4.2511 33 1 5.4811 -1.1524 4.3687 34 1 6.9790 -0.6649 2.4766 35 1 2.4059 3.4480 1.1593 36 1 3.7891 2.8198 2.0878 37 1 5.1740 4.7159 1.3973 38 1 3.6486 5.3430 2.0757 39 1 2.9999 9.2744 -1.9793 40 1 5.2309 4.7004 -1.3693 41 1 3.7348 5.3197 -2.1170 42 1 3.8752 2.7965 -2.0952 43 1 2.4550 3.4343 -1.2317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043612017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = -8.410233 kcal Electronic energy + Delta-G solvation = -28594.501648 eV Core-core repulsion = 24667.529148 eV Total energy + Delta-G solvation = -3926.972500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.24983 -39.37021 -38.16786 -36.42394 -36.33977 -34.79490 -32.31260 -31.16651 -30.84855 -30.30799 -28.58470 -27.30503 -25.08374 -23.44763 -23.20517 -22.31569 -22.12288 -20.51935 -19.50608 -17.92627 -17.34449 -17.12559 -16.50195 -16.09444 -15.81588 -15.53446 -15.05560 -14.73272 -14.31395 -14.21447 -14.05515 -13.91744 -13.54251 -13.48801 -13.35104 -12.68567 -12.45436 -12.30275 -12.10659 -11.99035 -11.74236 -11.61949 -11.56674 -11.46872 -11.01920 -10.87341 -10.78855 -10.70273 -10.38153 -10.26784 -9.99914 -9.79352 -9.42358 -9.14494 -8.83356 -8.59284 -8.03314 -6.81570 -5.87096 -3.27525 0.93777 1.02197 2.06479 2.14068 2.62397 3.35767 3.37235 3.53139 3.58138 4.07002 4.30121 4.54528 4.59491 4.73539 4.79079 4.98343 4.99944 5.05405 5.06443 5.09139 5.22256 5.37854 5.39547 5.40568 5.59686 5.66475 5.83720 5.94514 6.00838 6.03597 6.08164 6.17505 6.21975 6.25905 6.42696 6.43846 6.53371 6.63321 6.73946 6.99893 7.15711 7.35895 7.72576 8.06322 8.41659 9.00922 9.78693 10.19890 11.29320 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.004508 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.000111 B = 6209.081524 C = 7121.021127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.428 3.572 4 O -0.480 6.480 5 C 0.132 3.868 6 H 0.126 0.874 7 C -0.060 4.060 8 C -0.094 4.094 9 C -0.115 4.115 10 C -0.104 4.104 11 C -0.113 4.113 12 C -0.005 4.005 13 Cl -0.052 7.052 14 N -0.486 5.486 15 C 0.021 3.979 16 C 0.158 3.842 17 N -0.605 5.605 18 C -0.254 4.254 19 H 0.083 0.917 20 C 0.023 3.977 21 N -0.915 5.915 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.268 1.268 26 C 0.133 3.867 27 C 0.026 3.974 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 -24.526 6.864 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.268 3.732 4 O -0.366 6.366 5 C 0.021 3.979 6 H 0.144 0.856 7 C -0.062 4.062 8 C -0.112 4.112 9 C -0.133 4.133 10 C -0.123 4.123 11 C -0.132 4.132 12 C -0.032 4.032 13 Cl -0.023 7.023 14 N -0.209 5.209 15 C -0.107 4.107 16 C 0.031 3.969 17 N -0.330 5.330 18 C -0.383 4.383 19 H 0.101 0.899 20 C -0.176 4.176 21 N -0.558 5.558 22 Si 0.720 3.280 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.193 1.193 26 C 0.007 3.993 27 C -0.103 4.103 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.545 -23.959 6.657 24.996 hybrid contribution -0.312 -0.032 -0.898 0.951 sum 2.233 -23.991 5.759 24.773 Atomic orbital electron populations 1.23234 0.76995 1.03350 1.02608 1.86611 1.23014 1.34131 1.84058 1.25536 0.93205 0.81672 0.72810 1.90721 1.66838 1.35463 1.43535 1.20732 0.84687 0.93950 0.98558 0.85647 1.19119 0.92456 0.99322 0.95284 1.21004 0.99264 0.98258 0.92706 1.21149 0.95794 0.98515 0.97819 1.21122 0.93436 0.99552 0.98169 1.21050 1.00720 0.99233 0.92157 1.20647 0.90573 1.00676 0.91336 1.98395 1.64784 1.93552 1.45531 1.62593 1.56079 0.97574 1.04648 1.23003 1.00306 0.96767 0.90674 1.20946 0.97044 0.89556 0.89324 1.44332 1.72569 1.16675 0.99381 1.18910 1.20194 0.87907 1.11284 0.89914 1.25354 0.98125 0.95376 0.98718 1.69793 1.38639 1.14719 1.32679 0.86879 0.85003 0.75715 0.80450 1.21618 1.23311 1.19302 1.21434 0.97273 0.89928 0.90616 1.22969 1.00640 0.96836 0.89832 0.88351 0.92035 0.91918 0.85983 0.85328 0.85068 0.84748 0.91675 0.91875 0.95341 0.91696 0.92849 0.94896 0.90739 0.91913 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.50 9.70 -39.24 -0.38 -4.88 16 3 C 0.43 6.30 5.07 36.01 0.18 6.48 16 4 O -0.48 -8.63 11.39 -18.75 -0.21 -8.84 16 5 C 0.13 1.87 1.87 -70.01 -0.13 1.74 16 6 H 0.13 1.66 7.50 -51.93 -0.39 1.27 16 7 C -0.06 -0.76 4.04 -104.59 -0.42 -1.18 16 8 C -0.09 -1.05 7.96 -39.59 -0.32 -1.37 16 9 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.10 -0.86 10.05 -39.59 -0.40 -1.26 16 11 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 12 C -0.01 -0.06 6.31 -39.50 -0.25 -0.31 16 13 Cl -0.05 -0.64 27.57 -51.86 -1.43 -2.07 16 14 N -0.49 -8.33 4.56 -229.13 -1.05 -9.37 16 15 C 0.02 0.38 4.90 -3.71 -0.02 0.36 16 16 C 0.16 3.33 6.69 -3.60 -0.02 3.31 16 17 N -0.61 -15.14 2.78 -172.01 -0.48 -15.62 16 18 C -0.25 -7.39 10.08 -15.06 -0.15 -7.54 16 19 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 20 C 0.02 0.68 5.31 -17.43 -0.09 0.59 16 21 N -0.91 -28.86 13.97 55.49 0.78 -28.09 16 22 Si 0.89 23.20 24.27 -169.99 -4.13 19.08 16 23 H -0.29 -7.23 6.58 56.52 0.37 -6.86 16 24 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 25 H -0.27 -6.91 6.50 56.52 0.37 -6.55 16 26 C 0.13 3.07 4.32 -3.60 -0.02 3.05 16 27 C 0.03 0.50 5.19 -3.70 -0.02 0.48 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.12 1.41 6.36 -52.48 -0.33 1.08 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.07 1.32 5.63 -51.93 -0.29 1.03 16 36 H 0.06 1.03 6.22 -51.93 -0.32 0.70 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.36 7.95 -51.93 -0.41 0.94 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 40 H 0.03 0.76 6.76 -51.93 -0.35 0.41 16 41 H 0.07 1.85 4.80 -51.93 -0.25 1.60 16 42 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 43 H 0.06 1.37 5.83 -51.93 -0.30 1.07 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -33.58 348.87 -8.67 -42.25 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.66 Total: -0.55 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.37 Total: 2.84 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.75 Total: -53.08 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.59 Total: -13.72 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.13 Total: 19.08 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.58 -8.67 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043612017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.836 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds