Wall clock time and date at job start Tue Mar 31 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37417 * 123.36162 * 2 1 4 4 C 1.33891 * 115.10836 * 179.97438 * 3 2 1 5 5 S 1.70612 * 110.97072 * 359.72427 * 4 3 2 6 6 C 1.36815 * 123.36192 * 179.97438 * 2 1 3 7 7 C 1.46551 * 125.46473 * 0.02562 * 6 2 1 8 8 O 1.21843 * 120.00062 * 0.02562 * 7 6 2 9 9 C 1.47170 * 120.00289 * 179.97438 * 7 6 2 10 10 C 1.43201 * 119.99532 * 0.02562 * 9 7 6 11 11 N 4.92002 * 138.47316 * 179.97438 * 2 1 3 12 12 C 1.37923 * 120.00213 * 180.02562 * 9 7 6 13 13 C 1.46283 * 119.99949 * 186.76107 * 12 9 7 14 14 C 1.40219 * 120.25420 * 39.47382 * 13 12 9 15 15 C 1.37627 * 119.86979 * 180.02562 * 14 13 12 16 16 C 1.38722 * 120.39276 * 0.02562 * 15 14 13 17 17 C 1.38046 * 120.51819 * 359.73893 * 16 15 14 18 18 C 1.38790 * 120.11395 * 0.51461 * 17 16 15 19 19 O 1.35430 * 120.19422 * 179.76223 * 18 17 16 20 20 C 1.34732 * 117.00030 * 4.93416 * 19 18 17 21 21 H 1.08005 * 120.00171 * 354.87229 * 20 19 18 22 22 C 1.38790 * 120.00268 * 174.60082 * 20 19 18 23 23 N 1.31464 * 119.99574 * 0.27456 * 22 20 19 24 24 Si 1.86796 * 120.00204 * 180.27044 * 22 20 19 25 25 H 1.48501 * 109.47239 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47025 * 119.99791 * 24 22 20 27 27 H 1.48501 * 109.47121 * 240.00000 * 24 22 20 28 28 H 1.08994 * 109.47250 * 270.02394 * 1 2 3 29 29 H 1.08998 * 109.46688 * 30.02828 * 1 2 3 30 30 H 1.09004 * 109.46818 * 150.02126 * 1 2 3 31 31 H 1.07997 * 122.44707 * 359.95643 * 3 2 1 32 32 H 1.08003 * 124.51137 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.00254 * 6.75878 * 12 9 7 34 34 H 1.08002 * 120.06699 * 0.04188 * 14 13 12 35 35 H 1.08000 * 119.80123 * 179.97438 * 15 14 13 36 36 H 1.07995 * 119.74251 * 180.02562 * 16 15 14 37 37 H 1.07998 * 119.94299 * 180.26334 * 17 16 15 38 38 H 0.96997 * 119.99874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1477 0.0000 4 6 3.5877 0.9555 0.0005 5 16 3.9633 -0.7087 0.0088 6 6 2.2594 -1.1427 0.0005 7 6 1.7300 -2.5093 0.0006 8 8 0.5260 -2.6963 -0.0003 9 6 2.6527 -3.6558 0.0006 10 6 4.0677 -3.4361 0.0011 11 7 5.1903 -3.2618 0.0015 12 6 2.1545 -4.9420 0.0001 13 6 3.0634 -6.0784 0.1493 14 6 4.1429 -6.0074 1.0413 15 6 4.9934 -7.0811 1.1750 16 6 4.7898 -8.2345 0.4317 17 6 3.7294 -8.3237 -0.4477 18 6 2.8616 -7.2518 -0.6032 19 8 1.8236 -7.3358 -1.4690 20 6 1.6267 -8.5231 -2.0745 21 1 2.3300 -9.3290 -1.9247 22 6 0.5171 -8.7126 -2.8864 23 7 -0.3390 -7.7317 -3.0688 24 14 0.2401 -10.3611 -3.7199 25 1 1.3390 -11.2910 -3.3553 26 1 -1.0572 -10.9297 -3.2736 27 1 0.2179 -10.1736 -5.1928 28 1 -0.3633 0.0004 1.0276 29 1 -0.3632 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.8201 2.1329 -0.0007 32 1 4.3210 1.7484 0.0002 33 1 1.0933 -5.1100 -0.1103 34 1 4.3065 -5.1119 1.6226 35 1 5.8247 -7.0251 1.8621 36 1 5.4634 -9.0710 0.5452 37 1 3.5771 -9.2277 -1.0186 38 1 -1.1143 -7.8639 -3.6364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044028370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:32 Heat of formation + Delta-G solvation = 42.175575 kcal Electronic energy + Delta-G solvation = -25163.999705 eV Core-core repulsion = 21450.854734 eV Total energy + Delta-G solvation = -3713.144970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.73834 -39.29074 -37.76594 -36.95906 -36.18735 -33.49860 -32.62661 -30.95408 -30.11270 -29.29446 -28.08345 -25.68588 -24.57641 -23.40176 -22.04977 -21.23159 -21.00864 -18.68463 -18.35092 -18.16297 -17.09168 -15.98681 -15.63337 -15.24631 -14.99517 -14.78937 -14.56741 -14.41359 -14.10806 -13.95403 -13.84443 -13.52090 -13.22850 -13.05201 -12.92765 -12.72554 -12.63918 -12.31551 -12.10096 -12.06437 -11.95840 -11.64054 -11.60148 -11.13376 -11.05620 -10.93682 -10.61326 -10.50559 -9.78086 -9.67260 -9.43391 -9.12180 -8.81652 -8.43559 -8.17442 -7.45057 -6.76827 -4.32125 0.28144 0.85755 1.59029 1.95265 2.07050 2.13624 2.38051 2.97136 2.97693 2.98564 3.01004 3.05122 3.71893 3.84078 4.09839 4.30727 4.38872 4.76936 4.81788 4.86488 5.12435 5.19351 5.29328 5.38664 5.47761 5.54473 5.63058 5.73025 5.79304 5.88429 5.91282 6.00460 6.19551 6.30491 6.36750 6.38820 6.48714 6.53647 6.80195 6.93045 7.04532 7.09898 7.47119 7.64059 7.65891 7.86259 8.66261 9.28202 10.38374 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003360 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.815214 B = 8330.531748 C = 9990.289899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.025 4.025 3 C -0.154 4.154 4 C -0.247 4.247 5 S 0.228 5.772 6 C -0.292 4.292 7 C 0.484 3.516 8 O -0.448 6.448 9 C -0.223 4.223 10 C 0.267 3.733 11 N -0.422 5.422 12 C 0.144 3.856 13 C -0.207 4.207 14 C -0.031 4.031 15 C -0.217 4.217 16 C -0.046 4.046 17 C -0.231 4.231 18 C 0.181 3.819 19 O -0.150 6.150 20 C -0.395 4.395 21 H 0.100 0.900 22 C 0.045 3.955 23 N -0.839 5.839 24 Si 0.946 3.054 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 9.858 6.043 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 C -0.185 4.185 4 C -0.385 4.385 5 S 0.498 5.502 6 C -0.410 4.410 7 C 0.365 3.635 8 O -0.327 6.327 9 C -0.229 4.229 10 C -0.046 4.046 11 N -0.101 5.101 12 C 0.121 3.879 13 C -0.208 4.208 14 C -0.049 4.049 15 C -0.236 4.236 16 C -0.065 4.065 17 C -0.250 4.250 18 C 0.123 3.877 19 O -0.050 6.050 20 C -0.470 4.470 21 H 0.117 0.883 22 C -0.163 4.163 23 N -0.470 5.470 24 Si 0.770 3.230 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.447 9.458 5.803 12.833 hybrid contribution -1.564 0.134 -0.462 1.636 sum 4.883 9.591 5.341 12.015 Atomic orbital electron populations 1.20751 0.88767 1.03982 1.02986 1.19631 0.97747 0.90622 0.95967 1.19882 0.92606 0.99479 1.06582 1.25672 1.00719 1.04047 1.08045 1.84065 1.03537 0.95916 1.66663 1.25006 0.97468 0.98731 1.19775 1.18536 0.87680 0.84873 0.72447 1.90677 1.15918 1.86685 1.39433 1.18330 0.85390 0.94952 1.24212 1.25349 0.92685 0.93442 0.93136 1.81142 1.11098 1.06737 1.11103 1.23190 1.00507 0.88971 0.75192 1.17999 1.01735 0.94373 1.06742 1.20993 0.91132 0.97477 0.95321 1.20543 1.02450 0.95043 1.05548 1.21016 0.95350 0.96759 0.93350 1.21168 0.98403 1.00514 1.04925 1.19374 0.88269 0.91854 0.88212 1.83825 1.39860 1.35264 1.46007 1.21573 1.09939 0.88431 1.27035 0.88263 1.25436 0.94363 0.99852 0.96653 1.69992 1.11433 1.31529 1.34066 0.85566 0.79110 0.79407 0.78965 1.18810 1.19738 1.19784 0.90630 0.91700 0.88819 0.84285 0.81905 0.82455 0.86655 0.86938 0.86808 0.84760 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.55 36.00 0.34 -0.92 16 2 C -0.02 -0.33 5.91 -105.44 -0.62 -0.96 16 3 C -0.15 -1.75 9.97 -41.41 -0.41 -2.16 16 4 C -0.25 -2.75 10.92 29.21 0.32 -2.44 16 5 S 0.23 3.09 18.77 -107.50 -2.02 1.07 16 6 C -0.29 -4.40 6.38 -36.75 -0.23 -4.63 16 7 C 0.48 8.16 7.08 -32.61 -0.23 7.93 16 8 O -0.45 -8.18 14.22 5.06 0.07 -8.11 16 9 C -0.22 -3.85 5.82 -104.46 -0.61 -4.46 16 10 C 0.27 4.58 8.91 -22.47 -0.20 4.38 16 11 N -0.42 -7.36 17.25 41.84 0.72 -6.64 16 12 C 0.14 2.66 8.97 -36.47 -0.33 2.34 16 13 C -0.21 -4.02 5.42 -104.94 -0.57 -4.59 16 14 C -0.03 -0.54 8.32 -39.06 -0.33 -0.86 16 15 C -0.22 -3.55 10.02 -39.63 -0.40 -3.95 16 16 C -0.05 -0.77 10.03 -39.47 -0.40 -1.16 16 17 C -0.23 -4.49 9.16 -39.45 -0.36 -4.86 16 18 C 0.18 3.93 6.68 -38.39 -0.26 3.67 16 19 O -0.15 -3.79 9.21 1.31 0.01 -3.78 16 20 C -0.39 -9.87 9.49 30.94 0.29 -9.58 16 21 H 0.10 2.27 5.20 -52.48 -0.27 2.00 16 22 C 0.05 1.12 5.50 -17.50 -0.10 1.02 16 23 N -0.84 -22.38 13.67 55.49 0.76 -21.63 16 24 Si 0.95 18.62 29.55 -169.99 -5.02 13.60 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.30 6.02 -51.93 -0.31 0.99 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.16 2.99 7.61 -52.48 -0.40 2.59 16 34 H 0.12 1.86 6.57 -52.49 -0.34 1.52 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.13 2.55 5.63 -52.49 -0.30 2.26 16 38 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -27.82 349.96 -7.58 -35.40 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.30 Total: 6.04 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.08 Total: -21.23 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 1.48 Total: -28.26 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.02 Total: 1.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.82 -7.58 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044028370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.571 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds