Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47326 * 2 1 4 4 N 1.46503 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99768 * 266.78005 * 4 3 2 6 6 H 1.07996 * 119.99848 * 338.08599 * 5 4 3 7 7 C 1.38811 * 119.99424 * 158.09363 * 5 4 3 8 8 N 1.31618 * 120.00562 * 5.09701 * 7 5 4 9 9 Si 1.86803 * 119.99567 * 185.09612 * 7 5 4 10 10 H 1.48499 * 109.47204 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47031 * 119.99738 * 9 7 5 12 12 H 1.48498 * 109.47296 * 239.99976 * 9 7 5 13 13 C 1.46498 * 119.99881 * 86.77963 * 4 3 2 14 14 C 1.50693 * 109.46896 * 269.99664 * 13 4 3 15 15 O 1.21285 * 120.00554 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99822 * 179.97438 * 14 13 4 17 17 C 1.39831 * 120.00162 * 185.12587 * 16 14 13 18 18 C 1.38971 * 119.94454 * 33.62810 * 17 16 14 19 19 C 1.37873 * 120.04886 * 180.02562 * 18 17 16 20 20 C 1.39395 * 119.94755 * 359.97438 * 19 18 17 21 21 C 1.48345 * 120.05026 * 179.97438 * 20 19 18 22 22 C 1.39360 * 120.12620 * 180.02562 * 21 20 19 23 23 C 1.38007 * 119.87955 * 180.02562 * 22 21 20 24 24 C 1.38324 * 120.12264 * 0.02562 * 23 22 21 25 25 C 1.38328 * 120.25018 * 0.27441 * 24 23 22 26 26 C 1.38013 * 120.11829 * 359.44619 * 25 24 23 27 27 C 1.39398 * 119.90081 * 0.25804 * 20 19 18 28 28 C 1.37867 * 119.94975 * 359.52928 * 27 20 19 29 29 H 1.09009 * 109.46678 * 299.99915 * 1 2 3 30 30 H 1.08998 * 109.47482 * 59.99285 * 1 2 3 31 31 H 1.08998 * 109.47635 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46700 * 240.00464 * 2 1 3 33 33 H 1.09005 * 109.47096 * 120.00649 * 2 1 3 34 34 H 1.09002 * 109.46852 * 60.00557 * 3 2 1 35 35 H 1.08995 * 109.47022 * 300.00431 * 3 2 1 36 36 H 0.96993 * 119.99937 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46778 * 150.00287 * 13 4 3 38 38 H 1.09000 * 109.47013 * 30.00248 * 13 4 3 39 39 H 0.97007 * 119.99884 * 5.13632 * 16 14 13 40 40 H 1.08002 * 119.98027 * 359.97438 * 18 17 16 41 41 H 1.08000 * 120.02481 * 179.97438 * 19 18 17 42 42 H 1.08000 * 120.06225 * 0.02562 * 22 21 20 43 43 H 1.08003 * 119.94294 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.87840 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.93977 * 179.72163 * 25 24 23 46 46 H 1.08002 * 120.05944 * 180.27944 * 26 25 24 47 47 H 1.08001 * 120.02814 * 179.72399 * 27 20 19 48 48 H 1.07997 * 119.98025 * 180.19472 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5088 1.1832 6 1 3.7091 1.9078 2.0639 7 6 5.5032 1.0633 1.2510 8 7 6.1224 0.6710 0.1579 9 14 6.3912 1.0207 2.8939 10 1 5.4815 1.5092 3.9612 11 1 6.8053 -0.3728 3.1968 12 1 7.5925 1.8913 2.8300 13 6 4.2370 1.3713 -1.2677 14 6 4.4880 -0.0716 -1.6224 15 8 4.0938 -0.9539 -0.8894 16 7 5.1496 -0.3819 -2.7549 17 6 5.2892 -1.7191 -3.1391 18 6 4.2778 -2.6304 -2.8597 19 6 4.4134 -3.9495 -3.2371 20 6 5.5659 -4.3687 -3.8999 21 6 5.7145 -5.7876 -4.3064 22 6 6.8662 -6.2085 -4.9686 23 6 6.9988 -7.5296 -5.3450 24 6 5.9910 -8.4353 -5.0666 25 6 4.8430 -8.0219 -4.4151 26 6 4.7021 -6.7044 -4.0290 27 6 6.5811 -3.4539 -4.1747 28 6 6.4392 -2.1349 -3.7994 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 7.0399 0.3601 0.2053 37 1 5.1895 1.8915 -1.1667 38 1 3.6476 1.8418 -2.0546 39 1 5.5290 0.3225 -3.3034 40 1 3.3852 -2.3052 -2.3459 41 1 3.6274 -4.6574 -3.0194 42 1 7.6535 -5.5022 -5.1868 43 1 7.8911 -7.8571 -5.8579 44 1 6.0988 -9.4682 -5.3634 45 1 4.0573 -8.7323 -4.2043 46 1 3.8073 -6.3836 -3.5164 47 1 7.4768 -3.7774 -4.6841 48 1 7.2241 -1.4250 -4.0149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048275352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = 41.478857 kcal Electronic energy + Delta-G solvation = -28721.062484 eV Core-core repulsion = 24934.519282 eV Total energy + Delta-G solvation = -3786.543202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.93290 -39.01609 -37.56820 -35.72109 -33.88107 -32.92258 -31.61070 -31.38209 -30.56136 -30.31290 -28.34046 -26.62542 -25.52696 -23.50205 -23.27245 -22.13087 -21.47616 -20.79711 -20.10497 -19.31515 -17.71642 -17.13144 -16.45630 -15.98638 -15.74952 -15.20688 -15.00157 -14.29016 -14.27396 -14.04648 -13.82031 -13.72440 -13.68276 -13.28330 -13.11311 -13.04297 -12.89825 -12.70166 -12.20943 -12.11167 -11.90097 -11.52220 -11.37523 -11.21934 -11.04995 -11.00928 -10.79095 -10.60844 -10.58985 -10.38201 -10.11251 -9.97524 -9.81299 -9.58796 -9.00584 -8.86486 -8.72493 -8.62210 -8.30188 -7.18476 -6.87084 -5.86614 -3.25118 0.84786 1.35451 1.76511 2.10376 3.36422 3.44690 3.46253 3.68931 3.96773 4.10876 4.40618 4.55328 4.74125 4.75927 4.89161 5.01473 5.24162 5.26047 5.33912 5.40120 5.41313 5.47326 5.68274 5.78558 5.81737 5.86613 5.89062 5.95902 6.01001 6.13585 6.19915 6.25916 6.32580 6.38735 6.42454 6.45660 6.48931 6.55747 6.60393 6.66904 6.76792 6.88248 6.93861 6.97674 7.05934 7.10310 7.22296 7.38743 7.64780 7.71346 8.26207 8.45186 9.13589 9.56769 9.78374 10.22143 11.21848 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.002842 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.133992 B = 9850.956504 C =10693.921235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.150 3.850 4 N -0.577 5.577 5 C -0.239 4.239 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.913 5.913 9 Si 0.912 3.088 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.168 3.832 14 C 0.529 3.471 15 O -0.510 6.510 16 N -0.691 5.691 17 C 0.195 3.805 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.097 4.097 21 C -0.021 4.021 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.085 4.085 28 C -0.163 4.163 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.254 0.746 37 H 0.117 0.883 38 H 0.030 0.970 39 H 0.399 0.601 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -8.980 -12.959 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.023 3.977 4 N -0.297 5.297 5 C -0.368 4.368 6 H 0.093 0.907 7 C -0.191 4.191 8 N -0.560 5.560 9 Si 0.743 3.257 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.219 1.219 13 C 0.037 3.963 14 C 0.318 3.682 15 O -0.382 6.382 16 N -0.336 5.336 17 C 0.097 3.903 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.099 4.099 21 C -0.021 4.021 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.152 4.152 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.103 4.103 28 C -0.184 4.184 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.048 0.952 39 H 0.233 0.767 40 H 0.153 0.847 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.733 -9.503 -12.278 15.622 hybrid contribution 1.027 -0.125 0.714 1.257 sum -0.706 -9.628 -11.563 15.064 Atomic orbital electron populations 1.21790 0.98135 1.00258 1.00486 1.22151 0.92496 1.00324 1.02873 1.20959 0.84230 0.93992 0.98502 1.43810 0.99731 1.83846 1.02266 1.19321 0.95028 1.33803 0.88624 0.90699 1.24900 0.97980 0.98906 0.97303 1.69555 1.11980 1.48799 1.25714 0.86058 0.79120 0.77256 0.83284 1.20480 1.21739 1.21890 1.20681 0.98762 0.90367 0.86490 1.22431 0.74392 0.94426 0.76966 1.90517 1.50250 1.49974 1.47493 1.44242 1.58490 1.04476 1.26401 1.18024 0.92430 0.86149 0.93707 1.21102 0.99440 0.92833 1.01543 1.21018 0.96777 0.95540 0.96975 1.18551 0.96109 0.91752 1.03442 1.18862 0.94060 0.92437 0.96722 1.21237 0.97469 0.96047 0.99153 1.21051 0.98922 0.93379 1.00179 1.21130 0.94372 0.99427 1.00244 1.21068 0.97828 0.95814 0.98732 1.21280 0.98980 0.93110 1.00429 1.20867 0.97829 0.92400 0.99248 1.20832 0.96606 0.96236 1.04763 0.93569 0.93779 0.93955 0.92220 0.92095 0.93462 0.94870 0.93507 0.86500 0.95171 0.76684 0.84704 0.86204 0.85841 0.86213 0.86415 0.86169 0.85753 0.86194 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.14 -2.76 5.37 -26.73 -0.14 -2.91 16 3 C 0.15 3.05 5.71 -4.04 -0.02 3.03 16 4 N -0.58 -13.80 2.10 -174.61 -0.37 -14.17 16 5 C -0.24 -6.32 9.70 -15.06 -0.15 -6.47 16 6 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 7 C 0.01 0.14 5.39 -17.43 -0.09 0.05 16 8 N -0.91 -24.68 8.15 55.49 0.45 -24.23 16 9 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.17 3.69 5.47 -5.20 -0.03 3.66 16 14 C 0.53 11.74 5.26 -10.99 -0.06 11.69 16 15 O -0.51 -13.10 11.41 5.55 0.06 -13.04 16 16 N -0.69 -12.71 5.33 -9.84 -0.05 -12.76 16 17 C 0.19 3.51 6.28 -83.66 -0.53 2.98 16 18 C -0.13 -2.36 8.64 -39.44 -0.34 -2.70 16 19 C -0.08 -1.35 9.42 -39.28 -0.37 -1.72 16 20 C -0.10 -1.46 5.88 -104.88 -0.62 -2.08 16 21 C -0.02 -0.28 5.88 -104.90 -0.62 -0.90 16 22 C -0.12 -1.42 9.43 -39.25 -0.37 -1.79 16 23 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 24 C -0.13 -1.33 10.04 -39.52 -0.40 -1.73 16 25 C -0.12 -1.23 10.03 -39.63 -0.40 -1.63 16 26 C -0.12 -1.47 9.43 -39.25 -0.37 -1.84 16 27 C -0.08 -1.22 9.42 -39.29 -0.37 -1.59 16 28 C -0.16 -2.54 9.95 -39.44 -0.39 -2.94 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.28 6.39 -51.93 -0.33 0.95 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.05 0.94 7.99 -51.93 -0.42 0.53 16 35 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.12 2.77 6.31 -51.93 -0.33 2.44 16 38 H 0.03 0.57 7.92 -51.93 -0.41 0.16 16 39 H 0.40 6.08 8.82 -40.82 -0.36 5.72 16 40 H 0.14 2.71 6.42 -52.49 -0.34 2.37 16 41 H 0.12 1.67 6.20 -52.49 -0.33 1.34 16 42 H 0.12 1.26 6.20 -52.49 -0.33 0.93 16 43 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.40 6.20 -52.49 -0.33 1.08 16 47 H 0.12 1.40 6.20 -52.49 -0.33 1.08 16 48 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -30.98 386.60 -11.21 -42.19 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.82 Total: 9.64 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -5.29 Total: -10.45 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.03 Total: -51.16 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.98 -11.21 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048275352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.666 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds