Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37416 * 123.36214 * 2 1 4 4 C 1.33891 * 115.10868 * 180.02562 * 3 2 1 5 5 S 1.70618 * 110.96982 * 359.74330 * 4 3 2 6 6 C 1.36812 * 123.36036 * 180.02562 * 2 1 3 7 7 C 1.46555 * 125.46518 * 359.97438 * 6 2 1 8 8 O 1.21835 * 119.99987 * 359.97438 * 7 6 2 9 9 C 1.47165 * 120.00105 * 180.02562 * 7 6 2 10 10 C 1.43203 * 120.00075 * 353.21933 * 9 7 6 11 11 N 4.92440 * 138.20076 * 184.59620 * 2 1 3 12 12 C 1.37928 * 119.99981 * 173.22765 * 9 7 6 13 13 C 1.46273 * 120.00435 * 349.71341 * 12 9 7 14 14 C 1.40230 * 120.25303 * 314.25193 * 13 12 9 15 15 C 1.37621 * 119.87040 * 180.29649 * 14 13 12 16 16 C 1.38724 * 120.39077 * 359.69674 * 15 14 13 17 17 C 1.38035 * 120.52023 * 0.02562 * 16 15 14 18 18 C 1.38784 * 120.11737 * 359.97438 * 17 16 15 19 19 O 1.35440 * 120.19773 * 180.02562 * 18 17 16 20 20 C 1.34728 * 116.99815 * 5.00264 * 19 18 17 21 21 H 1.08002 * 120.00294 * 354.93563 * 20 19 18 22 22 C 1.38785 * 119.99865 * 174.65994 * 20 19 18 23 23 N 1.31460 * 119.99984 * 0.27819 * 22 20 19 24 24 Si 1.86802 * 119.99963 * 180.27754 * 22 20 19 25 25 H 1.48495 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47097 * 120.00399 * 24 22 20 27 27 H 1.48506 * 109.46854 * 240.00073 * 24 22 20 28 28 H 1.09005 * 109.47008 * 269.99986 * 1 2 3 29 29 H 1.09003 * 109.47159 * 29.99344 * 1 2 3 30 30 H 1.08996 * 109.47373 * 150.00353 * 1 2 3 31 31 H 1.07997 * 122.44653 * 359.97438 * 3 2 1 32 32 H 1.08001 * 124.51238 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.99745 * 169.71968 * 12 9 7 34 34 H 1.08002 * 120.06563 * 359.97438 * 14 13 12 35 35 H 1.08003 * 119.80686 * 179.72249 * 15 14 13 36 36 H 1.08003 * 119.74042 * 180.02562 * 16 15 14 37 37 H 1.08005 * 119.94553 * 179.97438 * 17 16 15 38 38 H 0.97003 * 120.00154 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2626 1.1477 0.0000 4 6 3.5877 0.9555 -0.0005 5 16 3.9632 -0.7088 0.0060 6 6 2.2593 -1.1427 -0.0005 7 6 1.7299 -2.5093 -0.0006 8 8 0.5260 -2.6962 0.0003 9 6 2.6525 -3.6558 -0.0006 10 6 4.0609 -3.4416 -0.1469 11 7 5.1780 -3.2717 -0.2630 12 6 2.1608 -4.9367 0.1402 13 6 0.7620 -5.1464 0.5129 14 6 0.1900 -4.4044 1.5563 15 6 -1.1251 -4.6123 1.9045 16 6 -1.8914 -5.5480 1.2250 17 6 -1.3465 -6.2833 0.1917 18 6 -0.0225 -6.0908 -0.1772 19 8 0.5138 -6.8110 -1.1912 20 6 -0.3182 -7.6243 -1.8705 21 1 -1.3418 -7.7423 -1.5467 22 6 0.1385 -8.3062 -2.9897 23 7 1.3843 -8.1627 -3.3838 24 14 -1.0173 -9.4279 -3.9361 25 1 -2.3554 -9.4167 -3.2923 26 1 -1.1369 -8.9477 -5.3362 27 1 -0.4779 -10.8116 -3.9317 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3634 -0.8900 -0.5137 31 1 1.8201 2.1328 -0.0004 32 1 4.3210 1.7484 -0.0010 33 1 2.8086 -5.7850 -0.0247 34 1 0.7819 -3.6748 2.0891 35 1 -1.5633 -4.0434 2.7112 36 1 -2.9226 -5.7024 1.5068 37 1 -1.9514 -7.0096 -0.3307 38 1 1.7035 -8.6390 -4.1663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048355514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = 53.403068 kcal Electronic energy + Delta-G solvation = -25708.284518 eV Core-core repulsion = 21995.626408 eV Total energy + Delta-G solvation = -3712.658110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.072 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.90720 -38.99890 -37.75271 -36.47126 -36.40273 -33.42277 -32.51416 -30.95361 -30.02465 -29.13032 -28.05426 -25.57395 -24.50780 -23.39391 -21.95851 -21.62737 -20.22692 -18.83557 -18.21261 -18.12187 -17.03633 -16.14062 -15.47600 -15.23055 -15.00680 -14.59514 -14.51597 -14.13442 -14.00498 -13.79509 -13.75976 -13.51431 -13.21182 -13.09912 -12.84063 -12.68295 -12.55600 -12.38770 -12.13090 -12.07374 -11.87398 -11.65497 -11.46758 -11.05401 -10.89753 -10.85973 -10.55362 -10.53944 -9.69978 -9.53761 -9.25334 -9.03158 -8.77023 -8.41805 -7.79676 -7.31188 -6.67745 -4.22778 0.30349 0.91162 1.60588 1.96067 2.22985 2.31303 2.41864 2.90499 2.99999 3.02909 3.04384 3.09676 3.79655 3.83839 4.14628 4.35155 4.46183 4.83551 4.85644 5.04054 5.19709 5.25928 5.35369 5.42110 5.53380 5.62399 5.66328 5.76177 5.92458 5.93138 6.03109 6.04793 6.18148 6.32328 6.43608 6.53374 6.56866 6.66467 6.92016 7.09668 7.18900 7.24324 7.64560 7.65814 7.76598 7.88177 8.77167 9.41620 10.48625 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003538 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.118348 B = 7912.900739 C = 8828.593526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.027 4.027 3 C -0.153 4.153 4 C -0.247 4.247 5 S 0.219 5.781 6 C -0.288 4.288 7 C 0.475 3.525 8 O -0.420 6.420 9 C -0.223 4.223 10 C 0.264 3.736 11 N -0.423 5.423 12 C 0.145 3.855 13 C -0.193 4.193 14 C 0.010 3.990 15 C -0.217 4.217 16 C -0.047 4.047 17 C -0.234 4.234 18 C 0.186 3.814 19 O -0.160 6.160 20 C -0.392 4.392 21 H 0.098 0.902 22 C 0.043 3.957 23 N -0.849 5.849 24 Si 0.944 3.056 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 12.288 7.742 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.041 4.041 3 C -0.185 4.185 4 C -0.385 4.385 5 S 0.489 5.511 6 C -0.406 4.406 7 C 0.353 3.647 8 O -0.297 6.297 9 C -0.228 4.228 10 C -0.049 4.049 11 N -0.102 5.102 12 C 0.122 3.878 13 C -0.195 4.195 14 C -0.008 4.008 15 C -0.236 4.236 16 C -0.065 4.065 17 C -0.253 4.253 18 C 0.129 3.871 19 O -0.061 6.061 20 C -0.467 4.467 21 H 0.116 0.884 22 C -0.163 4.163 23 N -0.481 5.481 24 Si 0.768 3.232 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.158 0.842 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.727 11.543 7.252 13.741 hybrid contribution -2.065 0.493 -0.602 2.207 sum -0.338 12.037 6.650 13.756 Atomic orbital electron populations 1.20740 0.88733 1.03949 1.02954 1.19619 0.97738 0.90601 0.96174 1.19891 0.92608 0.99503 1.06463 1.25614 1.00693 1.03814 1.08358 1.83978 1.03986 0.96165 1.66972 1.25137 0.97159 0.98990 1.19282 1.18542 0.88048 0.84636 0.73428 1.90777 1.15578 1.85870 1.37463 1.18260 0.85467 0.95766 1.23313 1.25475 0.92612 0.93940 0.92878 1.81152 1.11462 1.06237 1.11322 1.23018 0.94147 0.94343 0.76318 1.17701 0.93156 1.04166 1.04495 1.20663 0.94384 0.92536 0.93255 1.20457 0.94686 1.03940 1.04530 1.20943 0.98323 0.93776 0.93507 1.21091 0.95901 1.05927 1.02389 1.19379 0.91307 0.88071 0.88369 1.83810 1.37253 1.47550 1.37487 1.21510 0.94581 1.21827 1.08797 0.88431 1.25378 0.96989 0.97893 0.96074 1.69985 1.14620 1.39369 1.24141 0.85601 0.79333 0.79021 0.79283 1.18837 1.19913 1.19933 0.90666 0.91867 0.88750 0.84344 0.81972 0.84236 0.87230 0.87272 0.87211 0.85134 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.55 36.00 0.34 -0.92 16 2 C -0.03 -0.36 5.91 -105.44 -0.62 -0.98 16 3 C -0.15 -1.75 9.97 -41.41 -0.41 -2.16 16 4 C -0.25 -2.77 10.93 29.21 0.32 -2.45 16 5 S 0.22 2.96 18.84 -107.50 -2.03 0.93 16 6 C -0.29 -4.30 6.37 -36.75 -0.23 -4.53 16 7 C 0.48 7.93 6.22 -32.61 -0.20 7.72 16 8 O -0.42 -7.57 10.24 5.07 0.05 -7.52 16 9 C -0.22 -3.76 5.76 -104.46 -0.60 -4.36 16 10 C 0.26 4.42 12.31 -22.47 -0.28 4.15 16 11 N -0.42 -7.31 17.36 41.83 0.73 -6.58 16 12 C 0.14 2.59 9.08 -36.47 -0.33 2.26 16 13 C -0.19 -3.71 4.54 -104.94 -0.48 -4.19 16 14 C 0.01 0.17 6.66 -39.06 -0.26 -0.09 16 15 C -0.22 -3.49 10.02 -39.63 -0.40 -3.89 16 16 C -0.05 -0.79 10.03 -39.48 -0.40 -1.18 16 17 C -0.23 -4.62 9.16 -39.45 -0.36 -4.99 16 18 C 0.19 4.06 6.67 -38.40 -0.26 3.80 16 19 O -0.16 -4.11 9.21 1.29 0.01 -4.10 16 20 C -0.39 -10.01 9.49 30.93 0.29 -9.71 16 21 H 0.10 2.30 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.10 5.50 -17.51 -0.10 1.00 16 23 N -0.85 -23.13 13.67 55.49 0.76 -22.37 16 24 Si 0.94 19.12 29.55 -169.99 -5.02 14.10 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.34 6.02 -51.93 -0.31 1.03 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.14 2.42 8.06 -52.48 -0.42 2.00 16 34 H 0.11 1.66 7.21 -52.49 -0.38 1.28 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 37 H 0.13 2.55 5.63 -52.48 -0.30 2.26 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -28.47 347.30 -7.59 -36.06 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.35 Total: 4.77 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.97 Total: -20.53 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 1.48 Total: -28.95 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.62 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.03 Total: 0.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.47 -7.59 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048355514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.459 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds