Wall clock time and date at job start Tue Mar 31 2020 04:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47217 * 2 1 4 4 N 1.46494 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99769 * 268.85781 * 4 3 2 6 6 H 1.07997 * 120.00634 * 321.87399 * 5 4 3 7 7 C 1.38815 * 119.99615 * 141.87555 * 5 4 3 8 8 N 1.31619 * 120.00201 * 157.33280 * 7 5 4 9 9 Si 1.86803 * 120.00135 * 337.32862 * 7 5 4 10 10 H 1.48504 * 109.46854 * 95.68787 * 9 7 5 11 11 H 1.48496 * 109.47378 * 215.68490 * 9 7 5 12 12 H 1.48503 * 109.47167 * 335.68710 * 9 7 5 13 13 C 1.46496 * 120.00388 * 88.85936 * 4 3 2 14 14 N 1.46502 * 109.47307 * 89.99748 * 13 4 3 15 15 C 1.33910 * 124.20244 * 270.03235 * 14 13 4 16 16 O 1.21536 * 123.79839 * 359.97438 * 15 14 13 17 17 N 1.34770 * 112.40410 * 179.97438 * 15 14 13 18 18 C 1.46599 * 106.36806 * 0.02562 * 17 15 14 19 19 C 1.52661 * 110.87760 * 241.16181 * 18 17 15 20 20 C 1.53042 * 109.49318 * 281.28717 * 19 18 17 21 21 C 1.52948 * 109.28050 * 247.31203 * 20 19 18 22 22 C 1.53095 * 109.48730 * 75.53013 * 21 20 19 23 23 C 1.53048 * 109.53314 * 284.05411 * 22 21 20 24 24 C 1.53003 * 109.49481 * 113.18845 * 23 22 21 25 25 C 1.52815 * 110.76885 * 118.65572 * 18 17 15 26 26 C 1.34950 * 124.20110 * 89.99997 * 14 13 4 27 27 O 1.21237 * 127.29556 * 0.02618 * 26 14 13 28 28 H 1.09007 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47221 * 299.99655 * 1 2 3 30 30 H 1.09000 * 109.47480 * 60.00162 * 1 2 3 31 31 H 1.09001 * 109.47078 * 239.99685 * 2 1 3 32 32 H 1.09003 * 109.46856 * 120.00518 * 2 1 3 33 33 H 1.09007 * 109.46681 * 59.99742 * 3 2 1 34 34 H 1.09000 * 109.46763 * 300.00277 * 3 2 1 35 35 H 0.96994 * 120.00488 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46980 * 330.00288 * 13 4 3 37 37 H 1.08996 * 109.47981 * 210.00093 * 13 4 3 38 38 H 0.97000 * 126.81176 * 180.02562 * 17 15 14 39 39 H 1.08998 * 109.46149 * 161.28012 * 19 18 17 40 40 H 1.08996 * 109.46477 * 41.30017 * 19 18 17 41 41 H 1.09002 * 109.50955 * 7.25715 * 20 19 18 42 42 H 1.09007 * 109.49717 * 127.33134 * 20 19 18 43 43 H 1.09004 * 109.46558 * 195.54253 * 21 20 19 44 44 H 1.08998 * 109.46449 * 315.52566 * 21 20 19 45 45 H 1.09003 * 109.45992 * 44.07777 * 22 21 20 46 46 H 1.09005 * 109.45531 * 164.03679 * 22 21 20 47 47 H 1.09003 * 109.47098 * 233.19978 * 23 22 21 48 48 H 1.08999 * 109.46532 * 353.18150 * 23 22 21 49 49 H 1.08993 * 109.47129 * 76.07962 * 24 23 22 50 50 H 1.08993 * 109.47524 * 196.09035 * 24 23 22 51 51 H 1.09001 * 109.54232 * 78.80935 * 25 18 17 52 52 H 1.09001 * 109.54073 * 318.55020 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1891 1.4663 1.1866 6 1 3.8216 2.0603 2.0103 7 6 5.3551 0.7268 1.3302 8 7 6.2396 1.0635 2.2449 9 14 5.6688 -0.7464 0.2253 10 1 6.5112 -0.3317 -0.9253 11 1 6.3706 -1.8034 0.9969 12 1 4.3742 -1.2752 -0.2743 13 6 4.2381 1.4170 -1.2675 14 7 4.4824 2.7895 -1.7179 15 6 3.6488 3.4837 -2.5030 16 8 2.5972 3.0459 -2.9267 17 7 4.1072 4.7225 -2.7705 18 6 5.3924 4.8463 -2.0761 19 6 5.3473 5.9706 -1.0444 20 6 5.5059 7.3188 -1.7511 21 6 6.8421 7.9454 -1.3495 22 6 7.9815 7.2322 -2.0823 23 6 8.2394 5.8731 -1.4276 24 6 7.8617 4.7565 -2.4030 25 6 6.5248 5.0936 -3.0720 26 6 5.5753 3.5113 -1.3928 27 8 6.5067 3.1623 -0.6996 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9562 -0.8900 35 1 7.0545 0.5471 2.3450 36 1 3.6493 0.8881 -2.0169 37 1 5.1904 0.9059 -1.1265 38 1 3.6730 5.3981 -3.3144 39 1 6.1578 5.8385 -0.3277 40 1 4.3917 5.9450 -0.5208 41 1 5.4842 7.1688 -2.8306 42 1 4.6905 7.9807 -1.4593 43 1 6.8429 9.0020 -1.6173 44 1 6.9822 7.8434 -0.2734 45 1 7.7060 7.0858 -3.1267 46 1 8.8850 7.8394 -2.0269 47 1 9.2952 5.7886 -1.1698 48 1 7.6367 5.7852 -0.5237 49 1 8.6355 4.6624 -3.1648 50 1 7.7695 3.8158 -1.8604 51 1 6.5222 6.1408 -3.3744 52 1 6.3852 4.4595 -3.9476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048355688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:28 Heat of formation + Delta-G solvation = -12.214457 kcal Electronic energy + Delta-G solvation = -32867.586886 eV Core-core repulsion = 28869.125109 eV Total energy + Delta-G solvation = -3998.461777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -42.21084 -39.00739 -37.69788 -36.44347 -35.55610 -33.83498 -32.90086 -32.66362 -31.17511 -30.65994 -26.90790 -26.71688 -25.91125 -25.49076 -22.94545 -22.44106 -21.85799 -20.67395 -20.47651 -19.67402 -19.40346 -17.58984 -17.04776 -16.52304 -16.02569 -15.59559 -15.41409 -15.11073 -14.68498 -14.61656 -14.23085 -14.08713 -13.96517 -13.71240 -13.59411 -13.22423 -13.05408 -12.88797 -12.64007 -12.46091 -12.29444 -12.02062 -11.81373 -11.49144 -11.34422 -11.26308 -11.03793 -10.85067 -10.83252 -10.81735 -10.61613 -10.52048 -10.46235 -10.30581 -10.11623 -9.95024 -9.79159 -9.68114 -9.18539 -9.09046 -8.91702 -8.56143 -7.10712 -6.05687 -3.51031 2.30638 2.87009 3.24915 3.41094 3.44254 3.57643 3.69122 4.34023 4.45548 4.57974 4.70732 4.90820 4.94640 4.96219 5.00514 5.09063 5.14404 5.23853 5.27933 5.54965 5.58983 5.63059 5.67036 5.73043 5.75450 5.77985 5.85983 5.87480 5.96569 5.99254 6.01472 6.07605 6.08807 6.20415 6.21949 6.24338 6.32820 6.37774 6.39147 6.45342 6.56161 6.56880 6.64270 6.68336 6.89157 7.06929 7.15826 7.75206 7.94418 8.16667 8.32499 8.70858 8.84309 9.61309 9.96584 11.08734 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.004907 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.460886 B = 5704.185919 C = 6817.639790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.141 3.859 4 N -0.579 5.579 5 C -0.288 4.288 6 H 0.080 0.920 7 C 0.061 3.939 8 N -0.875 5.875 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.262 1.262 13 C 0.340 3.660 14 N -0.579 5.579 15 C 0.700 3.300 16 O -0.560 6.560 17 N -0.730 5.730 18 C 0.121 3.879 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.145 4.145 25 C -0.128 4.128 26 C 0.525 3.475 27 O -0.431 6.431 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.428 0.572 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 11.543 -10.758 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.299 5.299 5 C -0.416 4.416 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.512 5.512 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.187 1.187 13 C 0.134 3.866 14 N -0.330 5.330 15 C 0.401 3.599 16 O -0.436 6.436 17 N -0.393 5.393 18 C 0.030 3.970 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.182 4.182 25 C -0.165 4.165 26 C 0.310 3.690 27 O -0.298 6.298 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.270 0.730 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.118 0.882 51 H 0.116 0.884 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.216 10.880 -10.358 15.024 hybrid contribution 0.099 -0.529 -0.771 0.940 sum 0.316 10.352 -11.129 15.203 Atomic orbital electron populations 1.21708 0.96935 1.00566 1.01162 1.22048 0.94149 1.00096 1.01818 1.21141 0.83130 0.94134 1.00034 1.44712 1.01403 1.81781 1.02049 1.18696 1.06881 1.25142 0.90926 0.90263 1.25351 0.96104 0.97064 0.95783 1.69837 1.08005 1.38319 1.35087 0.87214 0.78508 0.85124 0.80639 1.21040 1.22170 1.18676 1.22055 0.97619 0.79201 0.87729 1.48892 1.20349 1.18288 1.45501 1.16379 0.83470 0.81266 0.78776 1.90907 1.22449 1.72657 1.57548 1.45650 1.22778 1.15621 1.55282 1.21162 0.85447 0.96244 0.94177 1.22064 1.04405 0.92325 0.97269 1.21768 0.97666 0.95779 1.00645 1.21742 0.94503 0.98798 1.00774 1.21882 0.98022 0.96524 1.00071 1.21816 1.01460 0.93458 0.99493 1.22064 0.95097 1.01961 0.99095 1.22242 0.93507 1.03878 0.96920 1.20517 0.82582 0.85928 0.79968 1.90767 1.31331 1.74904 1.32820 0.93644 0.93114 0.93267 0.93193 0.91697 0.92941 0.92941 0.92487 0.90576 0.89539 0.72960 0.88271 0.90878 0.91104 0.91829 0.92329 0.91472 0.91236 0.92518 0.92254 0.90408 0.92098 0.88223 0.88432 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.14 2.94 5.67 -4.05 -0.02 2.92 16 4 N -0.58 -13.83 2.30 -176.96 -0.41 -14.23 16 5 C -0.29 -7.90 9.90 -15.06 -0.15 -8.05 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.06 1.72 5.29 -17.43 -0.09 1.63 16 8 N -0.87 -26.16 13.97 55.49 0.78 -25.39 16 9 Si 0.86 21.60 25.09 -169.99 -4.26 17.34 16 10 H -0.28 -7.06 6.68 56.52 0.38 -6.68 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.34 7.72 5.08 -63.75 -0.32 7.40 16 14 N -0.58 -11.85 2.85 -124.28 -0.35 -12.21 16 15 C 0.70 12.97 8.63 -87.70 -0.76 12.21 16 16 O -0.56 -11.59 16.52 5.33 0.09 -11.51 16 17 N -0.73 -10.16 5.91 -53.76 -0.32 -10.48 16 18 C 0.12 1.73 0.72 -133.00 -0.10 1.63 16 19 C -0.12 -1.59 4.50 -26.88 -0.12 -1.72 16 20 C -0.12 -1.14 5.49 -26.74 -0.15 -1.29 16 21 C -0.12 -1.08 5.59 -26.71 -0.15 -1.23 16 22 C -0.13 -1.18 5.47 -26.66 -0.15 -1.33 16 23 C -0.13 -1.49 5.48 -26.71 -0.15 -1.64 16 24 C -0.14 -1.87 5.42 -26.60 -0.14 -2.02 16 25 C -0.13 -1.50 4.74 -26.70 -0.13 -1.62 16 26 C 0.53 10.30 6.42 -10.72 -0.07 10.23 16 27 O -0.43 -9.84 14.96 5.59 0.08 -9.75 16 28 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.05 1.09 7.09 -51.93 -0.37 0.72 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 1.62 7.80 -51.93 -0.40 1.22 16 37 H 0.09 2.13 3.25 -51.93 -0.17 1.96 16 38 H 0.43 4.62 8.96 -40.82 -0.37 4.26 16 39 H 0.10 1.44 4.59 -51.93 -0.24 1.20 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.59 5.52 -51.93 -0.29 0.31 16 42 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 45 H 0.07 0.60 5.45 -51.93 -0.28 0.31 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.07 4.67 -51.93 -0.24 0.83 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 1.67 4.58 -51.93 -0.24 1.43 16 51 H 0.10 0.92 2.90 -51.93 -0.15 0.77 16 52 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -31.51 381.46 -9.14 -40.65 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.21 Total: 7.42 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -2.29 Total: 12.41 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.30 Total: -62.31 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.17 Total: -21.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.26 Total: 17.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.51 -9.14 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048355688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.440 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds