Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99751 * 2 1 4 4 C 1.50707 * 109.46958 * 66.04967 * 3 2 1 5 5 O 1.21280 * 120.00168 * 5.95958 * 4 3 2 6 6 N 1.34783 * 119.99698 * 185.95861 * 4 3 2 7 7 C 1.46492 * 119.99887 * 184.38136 * 6 4 3 8 8 C 1.50699 * 109.47606 * 270.00455 * 7 6 4 9 9 H 1.08001 * 119.99463 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00431 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00053 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00376 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47263 * 60.00047 * 12 10 8 14 14 H 1.48498 * 109.47302 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47278 * 300.00107 * 12 10 8 16 16 C 1.39921 * 119.99975 * 4.38731 * 6 4 3 17 17 C 1.38871 * 120.07096 * 67.74747 * 16 6 4 18 18 C 1.38121 * 119.92977 * 179.97438 * 17 16 6 19 19 C 1.38282 * 120.06717 * 359.97346 * 18 17 16 20 20 C 1.38281 * 120.14378 * 0.04979 * 19 18 17 21 21 C 1.38113 * 120.07143 * 359.95135 * 20 19 18 22 22 C 1.46895 * 110.99913 * 236.04764 * 2 1 3 23 23 C 1.50709 * 109.47323 * 293.95537 * 22 2 1 24 24 C 1.38239 * 119.99480 * 269.72662 * 23 22 2 25 25 C 1.38235 * 119.99717 * 179.76405 * 24 23 22 26 26 C 1.38240 * 119.99604 * 0.50812 * 25 24 23 27 27 C 1.38229 * 120.00064 * 359.74483 * 26 25 24 28 28 C 1.38230 * 120.00455 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47150 * 59.99552 * 1 2 3 30 30 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46738 * 299.99637 * 1 2 3 32 32 H 1.08998 * 109.47315 * 306.04723 * 3 2 1 33 33 H 1.08998 * 109.46952 * 186.04319 * 3 2 1 34 34 H 1.09008 * 109.46984 * 30.00254 * 7 6 4 35 35 H 1.09001 * 109.47258 * 150.00132 * 7 6 4 36 36 H 0.96997 * 120.00652 * 179.97438 * 11 10 8 37 37 H 1.07995 * 120.03718 * 359.70080 * 17 16 6 38 38 H 1.07994 * 119.96284 * 179.97438 * 18 17 16 39 39 H 1.07994 * 119.92799 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.96534 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.04012 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.47131 * 53.95219 * 22 2 1 43 43 H 1.09001 * 109.47207 * 173.95262 * 22 2 1 44 44 H 1.07994 * 120.00242 * 0.02562 * 24 23 22 45 45 H 1.07999 * 120.00275 * 180.23364 * 25 24 23 46 46 H 1.08004 * 119.99650 * 179.72820 * 26 25 24 47 47 H 1.08003 * 119.99764 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.00605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2986 5 8 1.1008 1.4144 2.1835 6 7 1.9121 3.3545 1.4763 7 6 1.6520 3.9882 2.7712 8 6 0.2498 4.5400 2.7879 9 1 -0.3844 4.4292 1.9208 10 6 -0.2239 5.1852 3.9105 11 7 0.5479 5.3188 4.9670 12 14 -1.9618 5.8698 3.9310 13 1 -2.9313 4.7656 3.7160 14 1 -2.2258 6.5110 5.2441 15 1 -2.1101 6.8763 2.8493 16 6 2.4461 4.1064 0.4241 17 6 1.6766 4.3736 -0.7007 18 6 2.2065 5.1166 -1.7375 19 6 3.5015 5.5947 -1.6560 20 6 4.2704 5.3299 -0.5376 21 6 3.7465 4.5875 0.5025 22 6 1.9955 -0.7659 -1.1376 23 6 1.6369 -2.2205 -0.9729 24 6 2.4966 -3.0729 -0.3056 25 6 2.1655 -4.4060 -0.1503 26 6 0.9796 -4.8888 -0.6715 27 6 0.1225 -4.0375 -1.3433 28 6 0.4514 -2.7034 -1.4945 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5611 1.9273 -0.8309 33 1 3.0797 1.3444 -0.1082 34 1 1.7614 3.2498 3.5656 35 1 2.3634 4.7990 2.9284 36 1 0.2148 5.7730 5.7567 37 1 0.6666 3.9972 -0.7666 38 1 1.6088 5.3244 -2.6126 39 1 3.9137 6.1750 -2.4682 40 1 5.2817 5.7043 -0.4772 41 1 4.3476 4.3806 1.3756 42 1 1.5611 -0.3872 -2.0628 43 1 3.0797 -0.6610 -1.1756 44 1 3.4248 -2.6965 0.0980 45 1 2.8353 -5.0712 0.3743 46 1 0.7230 -5.9313 -0.5540 47 1 -0.8037 -4.4149 -1.7508 48 1 -0.2181 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048362387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = 36.943265 kcal Electronic energy + Delta-G solvation = -28812.334967 eV Core-core repulsion = 25025.595087 eV Total energy + Delta-G solvation = -3786.739880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.07258 -39.43395 -38.23167 -36.53565 -34.74182 -32.70960 -31.77410 -30.99395 -30.72506 -29.41481 -28.49765 -27.10847 -26.47019 -23.57860 -22.68351 -22.56015 -22.27153 -21.82111 -20.78583 -18.98351 -17.21049 -16.71702 -16.51076 -16.20820 -15.83590 -15.64880 -15.27196 -15.13789 -14.74237 -14.48789 -14.32642 -14.17609 -13.64600 -13.56567 -13.44630 -13.17308 -12.80987 -12.68840 -12.56706 -12.39910 -12.25160 -11.86862 -11.56373 -11.48445 -11.44808 -11.18240 -11.04828 -11.01556 -10.93348 -10.85938 -10.62170 -10.16793 -9.73400 -9.23873 -8.96696 -8.87383 -8.72167 -8.61326 -8.43710 -8.13704 -7.63952 -6.05635 -4.10031 1.25273 1.34334 1.54392 1.61634 3.29306 3.32001 3.35827 3.39662 3.48918 3.80607 4.00547 4.29984 4.44444 4.68465 4.76035 4.91903 4.96646 5.02361 5.14724 5.15711 5.20461 5.29341 5.32928 5.37026 5.41619 5.47367 5.51368 5.56928 5.65886 5.73468 5.77573 5.79484 5.91907 5.97493 6.02907 6.23167 6.34911 6.38210 6.43120 6.55928 6.57444 6.70265 6.78719 6.88480 6.93629 7.07411 7.13550 7.18649 7.36841 7.49344 7.89649 8.18870 8.36667 8.86496 9.02326 9.54315 11.02706 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.003285 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.296828 B = 8521.568321 C =10242.256114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.036 3.964 4 C 0.514 3.486 5 O -0.505 6.505 6 N -0.565 5.565 7 C 0.251 3.749 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.166 3.834 17 C -0.126 4.126 18 C -0.110 4.110 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.125 4.125 22 C 0.092 3.908 23 C -0.072 4.072 24 C -0.096 4.096 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.113 4.113 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -11.154 -17.148 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.240 5.240 3 C -0.095 4.095 4 C 0.300 3.700 5 O -0.378 6.378 6 N -0.295 5.295 7 C 0.133 3.867 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.139 4.139 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.074 3.926 17 C -0.145 4.145 18 C -0.129 4.129 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.035 4.035 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.141 4.141 28 C -0.132 4.132 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.961 -11.664 -15.967 20.652 hybrid contribution -1.311 1.022 -0.579 1.760 sum 4.650 -10.642 -16.546 20.215 Atomic orbital electron populations 1.22610 0.86455 1.02377 1.01625 1.61629 1.08976 1.11893 1.41479 1.22099 1.01534 0.89324 0.96502 1.20180 0.79298 0.81538 0.88964 1.90680 1.40013 1.63481 1.43674 1.46009 1.61686 1.08126 1.13653 1.19393 0.96605 0.93076 0.77606 1.21309 0.98475 1.36312 1.00220 0.92555 1.24900 0.97823 0.96000 0.95210 1.69913 1.36430 1.42870 1.04127 0.86560 0.84582 0.79141 0.77180 1.20139 1.21116 1.20245 1.17750 0.91482 0.94796 0.88609 1.21351 0.99308 0.99599 0.94285 1.20963 0.95590 0.98018 0.98347 1.21050 0.94739 1.01220 0.98359 1.20973 0.99769 0.98422 0.93609 1.21339 0.94501 0.99403 0.99277 1.21085 1.00476 0.89992 0.91950 1.19718 0.94744 0.94885 0.97871 1.21047 0.99741 0.93172 0.97538 1.21148 0.97160 0.95720 0.99995 1.21125 0.94797 0.99617 0.98643 1.21088 0.99561 0.93713 0.99780 1.21066 0.96318 0.95593 1.00175 0.96335 0.91189 0.89205 0.92166 0.88440 0.93524 0.94787 0.92613 0.86154 0.86232 0.86416 0.86095 0.85735 0.94003 0.89914 0.85916 0.86174 0.86372 0.86287 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.87 60.07 0.53 0.80 16 2 N -0.52 -7.86 4.45 -245.82 -1.09 -8.96 16 3 C 0.04 0.57 4.36 -4.98 -0.02 0.55 16 4 C 0.51 10.72 7.15 -10.98 -0.08 10.64 16 5 O -0.50 -12.61 14.24 5.56 0.08 -12.53 16 6 N -0.57 -12.12 2.51 -114.74 -0.29 -12.41 16 7 C 0.25 6.58 5.08 -5.20 -0.03 6.55 16 8 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 12 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.17 2.97 4.46 -83.69 -0.37 2.59 16 17 C -0.13 -2.00 8.23 -39.39 -0.32 -2.32 16 18 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 19 C -0.14 -1.63 10.04 -39.55 -0.40 -2.02 16 20 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 21 C -0.13 -1.97 9.68 -39.39 -0.38 -2.35 16 22 C 0.09 1.09 5.12 -4.97 -0.03 1.06 16 23 C -0.07 -0.85 4.89 -104.62 -0.51 -1.36 16 24 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 28 C -0.11 -1.23 7.91 -39.59 -0.31 -1.55 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 1.01 5.89 -51.93 -0.31 0.70 16 31 H 0.09 1.72 6.09 -51.93 -0.32 1.40 16 32 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 33 H 0.10 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.05 1.36 7.49 -51.92 -0.39 0.98 16 35 H 0.03 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.12 1.94 7.94 -52.49 -0.42 1.52 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 43 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.15 7.98 -52.49 -0.42 0.73 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -33.19 398.13 -11.48 -44.67 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.18 Total: 3.09 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -4.71 Total: -10.97 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.65 Total: -47.28 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.19 -11.48 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048362387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.610 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds