Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99940 * 2 1 4 4 C 1.38215 * 120.01965 * 0.18655 * 3 2 1 5 5 C 1.39622 * 119.87331 * 180.23712 * 4 3 2 6 6 C 1.47778 * 120.05142 * 179.81354 * 5 4 3 7 7 N 1.31112 * 125.11732 * 339.62722 * 6 5 4 8 8 C 1.35513 * 109.63538 * 179.89190 * 7 6 5 9 9 C 1.39881 * 133.38776 * 180.10669 * 8 7 6 10 10 C 1.36589 * 119.88851 * 180.28744 * 9 8 7 11 11 C 1.50701 * 119.66136 * 180.02562 * 10 9 8 12 12 C 1.38780 * 120.67896 * 359.97438 * 10 9 8 13 13 C 1.37909 * 120.46348 * 0.02562 * 12 10 9 14 14 C 1.38800 * 119.71523 * 0.02562 * 13 12 10 15 15 N 1.36924 * 125.11427 * 159.93458 * 6 5 4 16 16 C 1.46499 * 126.40429 * 359.95935 * 15 6 5 17 17 C 1.39684 * 119.89761 * 359.52936 * 5 4 3 18 18 C 1.37786 * 120.02905 * 0.28122 * 17 5 4 19 19 C 1.38950 * 120.13516 * 359.95668 * 18 17 5 20 20 O 1.35680 * 119.95399 * 180.02562 * 19 18 17 21 21 C 1.34796 * 116.99866 * 5.84435 * 20 19 18 22 22 H 1.07995 * 120.00155 * 5.50596 * 21 20 19 23 23 C 1.38653 * 120.00037 * 185.50470 * 21 20 19 24 24 N 1.31554 * 120.00399 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99911 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47235 * 90.00153 * 25 23 21 27 27 H 1.48494 * 109.47194 * 210.00003 * 25 23 21 28 28 H 1.48501 * 109.47199 * 330.00401 * 25 23 21 29 29 H 1.08999 * 109.47401 * 300.00421 * 1 2 3 30 30 H 1.09002 * 109.46973 * 60.00336 * 1 2 3 31 31 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.06314 * 0.03899 * 4 3 2 33 33 H 1.08002 * 120.05557 * 0.30277 * 9 8 7 34 34 H 1.09004 * 109.46813 * 269.97620 * 11 10 9 35 35 H 1.09003 * 109.47163 * 29.97558 * 11 10 9 36 36 H 1.09001 * 109.46746 * 149.97531 * 11 10 9 37 37 H 1.07994 * 119.77090 * 179.97438 * 12 10 9 38 38 H 1.07998 * 120.14384 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.46952 * 84.53395 * 16 15 6 40 40 H 1.09005 * 109.46702 * 204.53206 * 16 15 6 41 41 H 1.09001 * 109.47522 * 324.53195 * 16 15 6 42 42 H 1.07994 * 119.98522 * 180.25568 * 17 5 4 43 43 H 1.07999 * 119.93698 * 179.97438 * 18 17 5 44 44 H 0.96992 * 120.00512 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3708 0.0039 5 6 1.9308 3.6132 -0.0011 6 6 1.1302 4.8553 -0.0011 7 7 -0.1247 4.9437 -0.3703 8 6 -0.5475 6.2250 -0.2436 9 6 -1.7677 6.8630 -0.4898 10 6 -1.8916 8.2047 -0.2657 11 6 -3.2088 8.8868 -0.5321 12 6 -0.8173 8.9461 0.2058 13 6 0.3953 8.3387 0.4557 14 6 0.5414 6.9765 0.2332 15 7 1.5892 6.0881 0.3788 16 6 2.9391 6.4058 0.8508 17 6 3.3261 3.6803 -0.0001 18 6 4.0721 2.5219 0.0000 19 6 3.4395 1.2847 0.0000 20 8 4.1777 0.1463 0.0006 21 6 5.5131 0.2830 0.1234 22 1 5.9417 1.2576 0.3047 23 6 6.3364 -0.8275 0.0172 24 7 7.6397 -0.6941 0.1366 25 14 5.5949 -2.5133 -0.2956 26 1 5.5034 -2.7501 -1.7588 27 1 6.4551 -3.5546 0.3214 28 1 4.2367 -2.5753 0.3016 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2152 2.3158 0.0076 33 1 -2.6105 6.2957 -0.8562 34 1 -3.2330 9.2401 -1.5630 35 1 -4.0230 8.1802 -0.3710 36 1 -3.3230 9.7333 0.1450 37 1 -0.9315 10.0061 0.3774 38 1 1.2280 8.9207 0.8221 39 1 3.5920 6.5784 -0.0048 40 1 2.9060 7.3027 1.4694 41 1 3.3238 5.5727 1.4392 42 1 3.8202 4.6405 0.0002 43 1 5.1507 2.5755 0.0003 44 1 8.2156 -1.4710 0.0626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048879920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = 42.009579 kcal Electronic energy + Delta-G solvation = -28039.859962 eV Core-core repulsion = 24117.506679 eV Total energy + Delta-G solvation = -3922.353283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 5.79 seconds Orbital eigenvalues (eV) -42.02433 -39.84017 -37.94644 -37.84629 -36.19275 -34.25243 -32.62546 -32.08871 -30.54824 -29.72160 -29.02915 -27.55954 -26.84984 -26.06627 -25.34587 -23.16547 -22.00832 -21.33850 -21.07462 -20.12360 -18.05148 -17.93306 -17.16069 -17.06900 -16.09264 -15.81772 -15.58048 -15.31990 -15.18345 -14.73040 -14.23126 -14.08939 -13.93949 -13.83723 -13.79649 -13.72752 -13.36957 -13.08991 -12.89718 -12.41730 -12.38317 -12.25736 -11.95312 -11.89434 -11.67315 -11.45667 -11.27790 -11.12723 -10.91577 -10.82432 -10.57170 -10.30689 -10.28440 -9.80791 -9.65317 -9.04819 -8.42398 -8.07239 -8.00846 -7.11650 -6.58827 -4.20177 0.78376 1.46113 1.78290 1.93560 2.61526 3.04544 3.17919 3.22236 3.39662 3.79685 3.84926 4.15284 4.17642 4.32217 4.47812 4.59790 4.62885 4.80303 4.93336 4.93747 5.06742 5.12382 5.28103 5.31153 5.37036 5.43591 5.45820 5.46230 5.49441 5.50520 5.53917 5.74679 5.76257 5.80143 5.95198 6.02195 6.06100 6.34161 6.42553 6.51701 6.53983 6.58619 6.74105 6.85325 6.99999 7.19470 7.26729 7.47494 7.77018 7.96527 8.04889 8.75084 9.36034 10.46992 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.002598 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.373671 B =10777.000192 C =11955.507499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.307 6.307 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.107 4.107 6 C 0.364 3.636 7 N -0.504 5.504 8 C 0.061 3.939 9 C -0.072 4.072 10 C -0.099 4.099 11 C -0.107 4.107 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.035 3.965 15 N -0.493 5.493 16 C 0.072 3.928 17 C -0.082 4.082 18 C -0.203 4.203 19 C 0.156 3.844 20 O -0.189 6.189 21 C -0.388 4.388 22 H 0.110 0.890 23 C 0.067 3.933 24 N -0.867 5.867 25 Si 0.904 3.096 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.253 1.253 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.147 0.853 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 15.741 0.986 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.010 3.990 4 C -0.135 4.135 5 C -0.110 4.110 6 C 0.104 3.896 7 N -0.224 5.224 8 C -0.059 4.059 9 C -0.092 4.092 10 C -0.102 4.102 11 C -0.164 4.164 12 C -0.132 4.132 13 C -0.125 4.125 14 C -0.073 4.073 15 N -0.182 5.182 16 C -0.070 4.070 17 C -0.102 4.102 18 C -0.223 4.223 19 C 0.101 3.899 20 O -0.092 6.092 21 C -0.463 4.463 22 H 0.127 0.873 23 C -0.138 4.138 24 N -0.503 5.503 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.176 1.176 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.138 0.862 43 H 0.164 0.836 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.478 14.568 0.740 20.552 hybrid contribution 0.426 0.249 0.146 0.515 sum -14.052 14.818 0.885 20.440 Atomic orbital electron populations 1.22956 0.79663 1.03117 1.00958 1.86179 1.20054 1.26042 1.89790 1.17993 0.89169 0.84652 1.07188 1.20675 0.99476 0.89760 1.03561 1.16863 0.91210 0.87678 1.15268 1.21652 0.89391 0.84792 0.93808 1.70693 1.08779 1.18135 1.24778 1.19076 0.94176 0.89905 1.02715 1.19820 0.94984 0.93399 1.00987 1.19298 0.96214 0.93269 1.01402 1.20716 0.93683 1.00171 1.01810 1.20660 0.91894 0.99335 1.01348 1.19880 0.98428 0.90373 1.03770 1.18877 0.89133 0.92829 1.06492 1.45244 1.10745 1.07365 1.54876 1.22237 0.80587 1.03402 1.00731 1.21015 0.91758 0.98295 0.99092 1.20903 1.01190 0.90202 1.09958 1.18583 0.87760 0.87078 0.96459 1.83647 1.20434 1.27189 1.77900 1.20859 0.77179 0.98473 1.49819 0.87281 1.24507 0.94374 0.99707 0.95234 1.69633 1.02522 1.32355 1.45763 0.86180 0.80370 0.81244 0.79370 1.19663 1.20626 1.17615 0.93202 0.92994 0.88907 0.84699 0.85686 0.91442 0.91678 0.91727 0.85687 0.86335 0.90456 0.89956 0.88469 0.86157 0.83568 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.31 -6.08 10.28 -34.19 -0.35 -6.43 16 3 C 0.06 1.12 6.70 -39.11 -0.26 0.86 16 4 C -0.11 -2.07 8.66 -39.07 -0.34 -2.41 16 5 C -0.11 -1.88 5.85 -104.94 -0.61 -2.49 16 6 C 0.36 6.20 7.53 -154.54 -1.16 5.04 16 7 N -0.50 -9.01 11.00 -8.73 -0.10 -9.10 16 8 C 0.06 0.98 7.22 -84.72 -0.61 0.37 16 9 C -0.07 -0.95 9.67 -39.56 -0.38 -1.33 16 10 C -0.10 -1.07 5.84 -105.02 -0.61 -1.68 16 11 C -0.11 -0.79 9.99 36.01 0.36 -0.44 16 12 C -0.11 -1.15 9.67 -39.50 -0.38 -1.53 16 13 C -0.10 -1.19 10.05 -39.49 -0.40 -1.58 16 14 C 0.04 0.51 6.87 -83.91 -0.58 -0.06 16 15 N -0.49 -7.13 3.23 -119.05 -0.38 -7.52 16 16 C 0.07 0.75 9.30 59.85 0.56 1.31 16 17 C -0.08 -1.38 8.52 -39.21 -0.33 -1.71 16 18 C -0.20 -4.03 9.11 -39.48 -0.36 -4.39 16 19 C 0.16 3.51 6.67 -38.84 -0.26 3.25 16 20 O -0.19 -4.86 8.36 -14.24 -0.12 -4.98 16 21 C -0.39 -10.38 9.89 30.89 0.31 -10.07 16 22 H 0.11 2.90 5.52 -52.49 -0.29 2.61 16 23 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 24 N -0.87 -23.83 13.96 55.48 0.77 -23.06 16 25 Si 0.90 21.13 28.62 -169.99 -4.86 16.27 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 29 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.05 0.68 7.67 -51.93 -0.40 0.28 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.14 2.27 6.16 -52.49 -0.32 1.94 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 36 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.08 0.70 7.62 -51.93 -0.40 0.31 16 40 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.10 1.01 6.39 -51.93 -0.33 0.67 16 42 H 0.12 1.65 4.76 -52.49 -0.25 1.40 16 43 H 0.15 2.94 5.70 -52.49 -0.30 2.64 16 44 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.54 368.11 -8.87 -40.40 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.19 Total: 2.64 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -4.18 Total: -13.77 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.29 Total: -39.67 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.47 Total: -11.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.86 Total: 16.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.54 -8.87 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048879920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.411 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.79 seconds