Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50702 * 109.46811 * 119.99252 * 2 1 3 5 5 H 1.08001 * 119.99796 * 114.61367 * 4 2 1 6 6 C 1.37877 * 120.00089 * 294.60659 * 4 2 1 7 7 N 1.31512 * 120.00177 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99824 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47047 * 90.00713 * 8 6 4 10 10 H 1.48507 * 109.46787 * 210.00448 * 8 6 4 11 11 H 1.48502 * 109.46898 * 330.00154 * 8 6 4 12 12 N 1.46891 * 109.47294 * 239.99443 * 2 1 3 13 13 C 1.46905 * 111.00093 * 300.12172 * 12 2 1 14 14 C 1.53236 * 109.34044 * 187.25235 * 13 12 2 15 15 N 1.47083 * 108.52333 * 306.16939 * 14 13 12 16 16 C 1.34770 * 120.87945 * 231.18598 * 15 14 13 17 17 O 1.21595 * 120.00610 * 5.72924 * 16 15 14 18 18 C 1.47466 * 119.99733 * 185.72561 * 16 15 14 19 19 C 1.38713 * 120.37698 * 53.93295 * 18 16 15 20 20 C 1.38912 * 120.65473 * 179.97438 * 19 18 16 21 21 C 1.36287 * 121.17251 * 0.02562 * 20 19 18 22 22 C 1.40561 * 120.12435 * 0.02562 * 21 20 19 23 23 C 1.40580 * 121.15991 * 180.02562 * 22 21 20 24 24 C 1.36139 * 119.64900 * 179.97438 * 23 22 21 25 25 C 1.39291 * 120.95229 * 0.02562 * 24 23 22 26 26 C 1.36258 * 120.93359 * 359.97438 * 25 24 23 27 27 C 1.40135 * 119.69169 * 359.96108 * 26 25 24 28 28 C 1.47079 * 118.23518 * 51.46176 * 15 14 13 29 29 C 1.46901 * 111.00229 * 64.42426 * 12 2 1 30 30 H 1.09002 * 109.47556 * 300.00631 * 1 2 3 31 31 H 1.08995 * 109.47337 * 60.00371 * 1 2 3 32 32 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00031 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.48886 * 67.29302 * 13 12 2 35 35 H 1.08997 * 109.51164 * 307.22523 * 13 12 2 36 36 H 1.08996 * 109.62765 * 186.45686 * 14 13 12 37 37 H 1.08997 * 109.62962 * 65.87866 * 14 13 12 38 38 H 1.08005 * 119.67796 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.41577 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.93883 * 179.72971 * 21 20 19 41 41 H 1.07994 * 120.17327 * 359.95421 * 23 22 21 42 42 H 1.08002 * 119.51754 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.53152 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.15366 * 180.02562 * 26 25 24 45 45 H 1.08995 * 109.63261 * 68.24703 * 28 15 14 46 46 H 1.08996 * 109.62945 * 188.83756 * 28 15 14 47 47 H 1.09000 * 109.49162 * 292.70731 * 29 12 2 48 48 H 1.08996 * 109.49278 * 52.75834 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5795 -1.6363 1.1340 6 6 1.7933 -0.1778 2.4797 7 7 1.1266 0.9497 2.5974 8 14 2.4165 -1.0579 4.0051 9 1 3.7814 -0.5735 4.3330 10 1 1.5054 -0.7794 5.1442 11 1 2.4580 -2.5204 3.7504 12 7 2.0197 -0.6926 -1.1993 13 6 1.5463 -2.0828 -1.2346 14 6 2.2212 -2.8194 -2.3965 15 7 1.9929 -2.0532 -3.6311 16 6 1.5011 -2.6501 -4.7347 17 8 1.1422 -3.8111 -4.6893 18 6 1.3980 -1.8954 -5.9974 19 6 2.5093 -1.2530 -6.5233 20 6 2.4188 -0.5409 -7.7125 21 6 1.2419 -0.4523 -8.3940 22 6 0.0899 -1.0866 -7.8977 23 6 -1.1351 -1.0099 -8.5831 24 6 -2.2316 -1.6365 -8.0748 25 6 -2.1586 -2.3539 -6.8830 26 6 -0.9874 -2.4486 -6.1931 27 6 0.1622 -1.8175 -6.6870 28 6 2.3214 -0.6195 -3.6310 29 6 1.6370 0.0318 -2.4187 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.9581 1.3241 3.4762 34 1 0.4654 -2.0955 -1.3747 35 1 1.7973 -2.5768 -0.2959 36 1 1.7900 -3.8152 -2.4986 37 1 3.2917 -2.8985 -2.2074 38 1 3.4542 -1.3069 -6.0030 39 1 3.2965 -0.0480 -8.1037 40 1 1.1931 0.1103 -9.3146 41 1 -1.2060 -0.4565 -9.5078 42 1 -3.1716 -1.5766 -8.6033 43 1 -3.0427 -2.8425 -6.5008 44 1 -0.9450 -3.0084 -5.2705 45 1 3.4013 -0.4913 -3.5582 46 1 1.9563 -0.1602 -4.5496 47 1 0.5549 -0.0104 -2.5423 48 1 1.9537 1.0716 -2.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053606933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = 26.890945 kcal Electronic energy + Delta-G solvation = -29421.460998 eV Core-core repulsion = 25634.285216 eV Total energy + Delta-G solvation = -3787.175782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97668 -39.50601 -37.74737 -36.60803 -34.92625 -33.02446 -32.44539 -30.87341 -30.52029 -29.72552 -28.95553 -26.07095 -25.29025 -24.20036 -23.42155 -23.08886 -22.66994 -21.39898 -19.96635 -18.64433 -17.87537 -17.12455 -16.84068 -16.39216 -16.08629 -15.68401 -15.18075 -14.96484 -14.50159 -14.33311 -14.26819 -13.89804 -13.76932 -13.74044 -13.52952 -13.37295 -12.99296 -12.73555 -12.52518 -12.28078 -12.02743 -11.68606 -11.45896 -11.32939 -11.24982 -11.16430 -11.15871 -10.90062 -10.79050 -10.66836 -10.41428 -10.18599 -10.05182 -9.82696 -9.66199 -8.95106 -8.83950 -8.49274 -8.43519 -8.06850 -7.25624 -6.06432 -4.09582 0.16451 0.79972 1.69202 2.60609 2.83390 3.12991 3.29088 3.35784 3.38600 3.91061 4.29820 4.37855 4.52614 4.59912 4.69815 4.81645 4.83168 4.89514 5.12330 5.15242 5.24387 5.24651 5.27820 5.41080 5.44205 5.55857 5.65515 5.71017 5.80751 5.85903 5.91603 5.96391 6.00915 6.02365 6.12917 6.23855 6.32888 6.37769 6.41933 6.53315 6.55355 6.64529 6.76337 6.76696 6.78260 7.04512 7.39279 7.48227 7.60289 7.75584 8.03230 8.18127 8.27807 8.51230 8.95610 9.55573 11.02171 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002741 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.456030 B =10212.488172 C =10417.333278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.045 0.955 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.048 3.952 14 C 0.113 3.887 15 N -0.598 5.598 16 C 0.559 3.441 17 O -0.540 6.540 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.121 4.121 21 C -0.090 4.090 22 C -0.055 4.055 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.097 4.097 27 C -0.019 4.019 28 C 0.109 3.891 29 C 0.039 3.961 30 H 0.079 0.921 31 H 0.009 0.991 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.029 0.971 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.031 0.969 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -1.558 -22.450 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 H 0.063 0.937 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.081 4.081 14 C -0.009 4.009 15 N -0.330 5.330 16 C 0.347 3.653 17 O -0.419 6.419 18 C -0.109 4.109 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.055 4.055 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.115 4.115 27 C -0.019 4.019 28 C -0.014 4.014 29 C -0.090 4.090 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.050 0.950 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.184 -2.054 -22.221 22.347 hybrid contribution -0.612 -0.217 0.914 1.121 sum -1.796 -2.270 -21.307 21.503 Atomic orbital electron populations 1.22366 1.01048 0.99180 1.00093 1.19312 0.89510 0.94818 0.85738 0.93746 1.21089 1.34808 1.08461 0.89820 0.91886 1.24925 0.95190 0.94999 0.99024 1.69913 1.40481 1.19116 1.23720 0.86536 0.78623 0.79986 0.82483 1.20667 1.21384 1.19894 1.62328 1.59505 1.01274 1.02228 1.22358 0.96561 0.91104 0.98028 1.21937 1.01133 0.95467 0.82316 1.48190 1.62589 1.10544 1.11665 1.18186 0.77381 0.86494 0.83276 1.90777 1.49189 1.17037 1.84905 1.19967 0.94416 1.00349 0.96159 1.21314 0.97878 0.94810 0.95961 1.20759 0.98300 0.99648 0.95141 1.21155 0.91982 0.98097 0.99539 1.18027 0.94546 0.98453 0.94472 1.21005 0.91898 1.00112 0.99727 1.20886 0.98682 0.97438 0.96171 1.20931 0.98017 0.99060 0.95300 1.21216 0.91879 0.97968 1.00430 1.17803 0.92823 0.97324 0.93969 1.22145 1.00721 0.79464 0.99079 1.22457 0.97421 0.98317 0.90808 0.90249 0.97224 0.95142 0.92950 0.95269 0.88374 0.89376 0.90787 0.85116 0.85214 0.85238 0.85412 0.85855 0.85759 0.84888 0.90548 0.90045 0.95044 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.34 37.16 0.31 -3.63 16 2 C 0.21 5.10 2.25 -68.87 -0.16 4.94 16 3 H 0.04 1.18 8.08 -51.93 -0.42 0.76 16 4 C -0.50 -13.22 7.90 -34.44 -0.27 -13.50 16 5 H 0.06 1.64 6.51 -52.49 -0.34 1.30 16 6 C 0.06 1.62 5.33 -17.82 -0.09 1.52 16 7 N -0.89 -24.96 11.73 55.43 0.65 -24.31 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.53 -10.67 4.61 -227.44 -1.05 -11.72 16 13 C 0.05 0.92 4.79 -3.70 -0.02 0.90 16 14 C 0.11 1.85 6.61 -3.60 -0.02 1.83 16 15 N -0.60 -9.21 3.00 -173.44 -0.52 -9.73 16 16 C 0.56 8.88 6.45 -12.50 -0.08 8.80 16 17 O -0.54 -10.09 15.16 5.28 0.08 -10.01 16 18 C -0.11 -1.44 4.63 -104.63 -0.48 -1.92 16 19 C -0.08 -0.87 7.80 -39.16 -0.31 -1.18 16 20 C -0.12 -1.05 9.93 -40.03 -0.40 -1.45 16 21 C -0.09 -0.80 9.75 -39.41 -0.38 -1.18 16 22 C -0.05 -0.61 5.74 -106.85 -0.61 -1.22 16 23 C -0.11 -1.02 9.77 -39.45 -0.39 -1.40 16 24 C -0.11 -1.06 9.95 -39.94 -0.40 -1.46 16 25 C -0.12 -1.26 9.95 -39.90 -0.40 -1.66 16 26 C -0.10 -1.31 9.21 -39.58 -0.36 -1.68 16 27 C -0.02 -0.25 5.76 -106.56 -0.61 -0.86 16 28 C 0.11 1.52 5.71 -3.36 -0.02 1.50 16 29 C 0.04 0.67 5.14 -3.46 -0.02 0.65 16 30 H 0.08 2.07 6.51 -51.93 -0.34 1.73 16 31 H 0.01 0.19 6.67 -51.93 -0.35 -0.15 16 32 H 0.03 0.70 6.57 -51.93 -0.34 0.36 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.03 0.59 6.72 -51.93 -0.35 0.24 16 35 H 0.10 1.99 6.18 -51.93 -0.32 1.67 16 36 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.13 1.24 7.73 -52.48 -0.41 0.83 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.13 2.00 6.40 -52.49 -0.34 1.66 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.00 5.54 -51.93 -0.29 0.71 16 47 H 0.03 0.57 6.80 -51.93 -0.35 0.22 16 48 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -30.52 374.05 -11.66 -42.18 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.72 Total: 3.06 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -4.71 Total: -10.99 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.92 Total: -45.76 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.52 -11.66 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053606933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.068 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds