Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42106 * 110.54598 * 2 1 4 4 O 1.42099 * 110.54231 * 223.25489 * 2 1 3 5 5 N 1.65599 * 104.45345 * 111.62698 * 2 1 3 6 6 C 1.39677 * 119.99750 * 59.93099 * 5 2 1 7 7 C 1.38783 * 119.83277 * 35.50169 * 6 5 2 8 8 C 1.38137 * 119.80474 * 180.02562 * 7 6 5 9 9 C 1.37899 * 120.03172 * 0.12586 * 8 7 6 10 10 C 1.39653 * 120.57786 * 359.91288 * 9 8 7 11 11 C 1.38277 * 119.43229 * 359.89847 * 10 9 8 12 12 C 1.50794 * 122.04495 * 180.45171 * 11 10 9 13 13 C 1.53042 * 109.65460 * 344.32223 * 12 11 10 14 14 C 1.53379 * 107.92362 * 47.29309 * 13 12 11 15 15 N 1.39406 * 117.62090 * 179.59686 * 10 9 8 16 16 C 1.46897 * 111.00375 * 285.69517 * 15 10 9 17 17 C 1.53000 * 109.47328 * 169.99969 * 16 15 10 18 18 C 1.53002 * 109.47296 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47136 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99870 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47232 * 119.99360 * 23 21 19 26 26 H 1.48499 * 109.47136 * 239.99834 * 23 21 19 27 27 H 1.09002 * 109.46535 * 308.37583 * 1 2 3 28 28 H 1.08998 * 109.46792 * 68.36879 * 1 2 3 29 29 H 1.08996 * 109.47185 * 188.37159 * 1 2 3 30 30 H 0.96990 * 120.00385 * 239.93177 * 5 2 1 31 31 H 1.08002 * 120.10235 * 0.29865 * 7 6 5 32 32 H 1.08001 * 119.98970 * 180.13955 * 8 7 6 33 33 H 1.07997 * 119.71016 * 179.89610 * 9 8 7 34 34 H 1.08998 * 109.44374 * 224.26024 * 12 11 10 35 35 H 1.09005 * 109.40677 * 104.35778 * 12 11 10 36 36 H 1.09002 * 109.77343 * 287.68369 * 13 12 11 37 37 H 1.09004 * 109.76942 * 166.89627 * 13 12 11 38 38 H 1.09001 * 109.60253 * 172.04758 * 14 13 12 39 39 H 1.09003 * 109.73656 * 51.64057 * 14 13 12 40 40 H 1.09000 * 109.47373 * 289.99986 * 16 15 10 41 41 H 1.08994 * 109.47213 * 49.99964 * 16 15 10 42 42 H 1.09008 * 109.47086 * 300.00041 * 17 16 15 43 43 H 1.09002 * 109.47281 * 59.99975 * 17 16 15 44 44 H 1.08994 * 109.47009 * 299.99914 * 18 17 16 45 45 H 1.09002 * 109.46932 * 59.99815 * 18 17 16 46 46 H 0.96993 * 119.99758 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8147 -1.8692 1.8741 7 6 1.7471 -2.8848 0.9307 8 6 1.3384 -4.1485 1.3104 9 6 0.9965 -4.3980 2.6229 10 6 1.0606 -3.3823 3.5791 11 6 1.4733 -2.1179 3.2007 12 6 1.5738 -0.9808 4.1860 13 6 0.8081 -1.3366 5.4625 14 6 1.2141 -2.7566 5.8762 15 7 0.6929 -3.7004 4.8856 16 6 -0.7650 -3.8361 5.0040 17 6 -1.1131 -4.4240 6.3730 18 6 -2.6316 -4.5648 6.4965 19 6 -2.9743 -5.1444 7.8447 20 1 -2.1878 -5.3884 8.5434 21 6 -4.2921 -5.3642 8.1858 22 7 -5.2499 -5.0676 7.3348 23 14 -4.7169 -6.0820 9.8572 24 1 -3.4683 -6.3257 10.6232 25 1 -5.5766 -5.1272 10.6020 26 1 -5.4436 -7.3642 9.6751 27 1 -0.3632 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.7559 -0.0497 2.0976 31 1 2.0173 -2.6889 -0.0964 32 1 1.2868 -4.9417 0.5792 33 1 0.6761 -5.3875 2.9137 34 1 1.1462 -0.0802 3.7455 35 1 2.6216 -0.8036 4.4290 36 1 -0.2644 -1.3007 5.2712 37 1 1.0657 -0.6338 6.2549 38 1 0.7950 -2.9860 6.8560 39 1 2.3008 -2.8317 5.9167 40 1 -1.2308 -2.8561 4.9004 41 1 -1.1331 -4.4980 4.2201 42 1 -0.6473 -5.4041 6.4766 43 1 -0.7450 -3.7621 7.1569 44 1 -3.0969 -3.5846 6.3931 45 1 -3.0001 -5.2265 5.7126 46 1 -6.1768 -5.2218 7.5749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058155643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -46.964965 kcal Electronic energy + Delta-G solvation = -27471.852892 eV Core-core repulsion = 23681.085335 eV Total energy + Delta-G solvation = -3790.767557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84498 -38.11566 -37.40022 -36.41926 -35.29354 -34.33784 -32.87331 -31.21185 -30.32223 -29.88176 -28.56157 -26.87766 -24.91127 -23.48063 -23.04860 -21.84678 -20.46614 -19.80987 -19.15035 -18.26480 -17.75113 -16.74322 -16.34558 -16.19044 -15.91693 -15.76660 -15.31769 -14.75194 -14.35306 -14.26468 -14.18559 -13.87435 -13.71115 -13.62482 -13.15494 -12.99552 -12.77920 -12.68548 -12.56616 -12.39428 -12.30471 -11.86322 -11.54805 -11.53391 -11.46217 -11.37759 -11.09225 -11.01020 -10.83334 -10.75462 -10.56073 -10.40727 -9.68708 -9.49437 -9.23353 -9.01384 -8.44567 -8.38590 -7.78964 -6.03852 -4.06030 -0.24997 1.24247 1.26271 2.15547 3.27999 3.28441 3.36235 3.40210 3.53801 3.77633 3.93246 4.32730 4.43366 4.55148 4.56439 4.66242 4.74584 4.84413 5.02258 5.18122 5.22410 5.29645 5.32400 5.43918 5.47446 5.54204 5.66291 5.68266 5.69464 5.77226 5.86104 5.94174 6.14076 6.15607 6.21961 6.36043 6.46848 6.52575 6.60925 6.66403 6.85489 7.05156 7.19652 7.51163 7.63073 7.76270 7.95949 8.38694 9.01237 9.58396 11.07573 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002370 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.763163 B =11809.091851 C =11840.478743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.667 4.667 2 S 2.610 3.390 3 O -0.956 6.956 4 O -0.948 6.948 5 N -1.053 6.053 6 C 0.161 3.839 7 C -0.198 4.198 8 C -0.079 4.079 9 C -0.135 4.135 10 C 0.146 3.854 11 C -0.143 4.143 12 C -0.077 4.077 13 C -0.158 4.158 14 C 0.050 3.950 15 N -0.499 5.499 16 C 0.061 3.939 17 C -0.108 4.108 18 C 0.023 3.977 19 C -0.518 4.518 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.424 0.576 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.450 10.273 -13.916 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.818 4.818 2 S 2.704 3.296 3 O -0.946 6.946 4 O -0.938 6.938 5 N -0.802 5.802 6 C 0.064 3.936 7 C -0.219 4.219 8 C -0.098 4.098 9 C -0.156 4.156 10 C 0.048 3.952 11 C -0.150 4.150 12 C -0.114 4.114 13 C -0.197 4.197 14 C -0.077 4.077 15 N -0.214 5.214 16 C -0.063 4.063 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.557 4.557 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.261 0.739 31 H 0.176 0.824 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.035 0.965 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.956 10.058 -14.595 23.192 hybrid contribution -1.058 0.433 1.402 1.809 sum 13.898 10.492 -13.193 21.847 Atomic orbital electron populations 1.30437 1.26926 1.12532 1.11874 1.05025 0.78006 0.73690 0.72906 1.93630 1.78359 1.37323 1.85328 1.93562 1.77267 1.60788 1.62159 1.53337 1.65668 1.23066 1.38155 1.17173 0.99101 0.83708 0.93576 1.21796 1.06003 0.92716 1.01427 1.20832 0.97135 0.96142 0.95723 1.21191 1.02867 0.99107 0.92450 1.18495 0.96379 0.90624 0.89686 1.19781 1.06696 0.94819 0.93672 1.20441 1.00880 0.95742 0.94308 1.22183 1.01176 0.98942 0.97423 1.22304 1.00317 0.88714 0.96356 1.58779 1.13959 1.47314 1.01312 1.22466 0.82469 1.00221 1.01135 1.21748 1.00295 0.99856 0.92655 1.19061 0.88346 0.96989 0.97075 1.21263 0.91957 1.41649 1.00801 0.92601 1.25025 0.96612 0.95739 0.97113 1.69970 0.99732 1.48568 1.35254 0.86548 0.78431 0.78824 0.84273 1.19718 1.21052 1.21001 0.84959 0.84909 0.84704 0.73892 0.82431 0.85235 0.85168 0.90859 0.90745 0.90796 0.90533 0.88717 0.90622 0.94198 0.90629 0.92364 0.93098 0.96799 0.96546 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.71 10.71 101.05 1.08 -2.63 16 2 S 2.61 21.02 5.86 -107.50 -0.63 20.39 16 3 O -0.96 -10.35 18.08 -57.54 -1.04 -11.39 16 4 O -0.95 -10.31 15.04 -57.54 -0.87 -11.18 16 5 N -1.05 -8.55 5.13 32.45 0.17 -8.38 16 6 C 0.16 1.66 6.09 -83.72 -0.51 1.15 16 7 C -0.20 -2.12 9.24 -39.42 -0.36 -2.48 16 8 C -0.08 -0.84 10.03 -39.74 -0.40 -1.24 16 9 C -0.14 -1.66 9.21 -39.18 -0.36 -2.02 16 10 C 0.15 1.91 5.12 -83.87 -0.43 1.48 16 11 C -0.14 -1.62 5.76 -104.19 -0.60 -2.22 16 12 C -0.08 -0.73 4.89 -27.82 -0.14 -0.86 16 13 C -0.16 -1.71 6.03 -26.51 -0.16 -1.87 16 14 C 0.05 0.63 5.68 -3.89 -0.02 0.60 16 15 N -0.50 -7.05 4.51 -171.31 -0.77 -7.82 16 16 C 0.06 0.99 4.75 -3.83 -0.02 0.97 16 17 C -0.11 -2.09 5.04 -26.73 -0.13 -2.22 16 18 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 19 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.42 2.76 8.06 -34.47 -0.28 2.48 16 31 H 0.16 1.66 5.16 -52.49 -0.27 1.39 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.91 6.39 -51.93 -0.33 0.58 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 39 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 40 H 0.04 0.65 6.41 -51.93 -0.33 0.32 16 41 H 0.08 1.24 7.57 -51.93 -0.39 0.85 16 42 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 43 H 0.05 0.96 6.24 -51.93 -0.32 0.63 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -34.27 373.72 -11.22 -45.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.83 Total: 0.75 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -2.60 Total: -24.06 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.13 Total: -41.91 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.91 Total: -22.57 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 21.02 SS G_CDS: -0.63 Total: 20.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.27 -11.22 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058155643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.473 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds