Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42106 * 110.54598 * 2 1 4 4 O 1.42099 * 110.54231 * 223.25489 * 2 1 3 5 5 N 1.65599 * 104.45345 * 111.62698 * 2 1 3 6 6 C 1.39677 * 119.99750 * 59.93099 * 5 2 1 7 7 C 1.38783 * 119.83277 * 35.50169 * 6 5 2 8 8 C 1.38137 * 119.80474 * 180.02562 * 7 6 5 9 9 C 1.37899 * 120.03172 * 0.12586 * 8 7 6 10 10 C 1.39653 * 120.57786 * 359.91288 * 9 8 7 11 11 C 1.38277 * 119.43229 * 359.89847 * 10 9 8 12 12 C 1.50794 * 122.04495 * 180.45171 * 11 10 9 13 13 C 1.53042 * 109.65460 * 344.32223 * 12 11 10 14 14 C 1.53379 * 107.92362 * 47.29309 * 13 12 11 15 15 N 1.39406 * 117.62090 * 179.59686 * 10 9 8 16 16 C 1.46897 * 111.00375 * 285.69517 * 15 10 9 17 17 C 1.53000 * 109.47328 * 169.99969 * 16 15 10 18 18 C 1.53002 * 109.47296 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47136 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99870 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47232 * 119.99360 * 23 21 19 26 26 H 1.48499 * 109.47136 * 239.99834 * 23 21 19 27 27 H 1.09002 * 109.46535 * 308.37583 * 1 2 3 28 28 H 1.08998 * 109.46792 * 68.36879 * 1 2 3 29 29 H 1.08996 * 109.47185 * 188.37159 * 1 2 3 30 30 H 0.96990 * 120.00385 * 239.93177 * 5 2 1 31 31 H 1.08002 * 120.10235 * 0.29865 * 7 6 5 32 32 H 1.08001 * 119.98970 * 180.13955 * 8 7 6 33 33 H 1.07997 * 119.71016 * 179.89610 * 9 8 7 34 34 H 1.08998 * 109.44374 * 224.26024 * 12 11 10 35 35 H 1.09005 * 109.40677 * 104.35778 * 12 11 10 36 36 H 1.09002 * 109.77343 * 287.68369 * 13 12 11 37 37 H 1.09004 * 109.76942 * 166.89627 * 13 12 11 38 38 H 1.09001 * 109.60253 * 172.04758 * 14 13 12 39 39 H 1.09003 * 109.73656 * 51.64057 * 14 13 12 40 40 H 1.09000 * 109.47373 * 289.99986 * 16 15 10 41 41 H 1.08994 * 109.47213 * 49.99964 * 16 15 10 42 42 H 1.09008 * 109.47086 * 300.00041 * 17 16 15 43 43 H 1.09002 * 109.47281 * 59.99975 * 17 16 15 44 44 H 1.08994 * 109.47009 * 299.99914 * 18 17 16 45 45 H 1.09002 * 109.46932 * 59.99815 * 18 17 16 46 46 H 0.96993 * 119.99758 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8147 -1.8692 1.8741 7 6 1.7471 -2.8848 0.9307 8 6 1.3384 -4.1485 1.3104 9 6 0.9965 -4.3980 2.6229 10 6 1.0606 -3.3823 3.5791 11 6 1.4733 -2.1179 3.2007 12 6 1.5738 -0.9808 4.1860 13 6 0.8081 -1.3366 5.4625 14 6 1.2141 -2.7566 5.8762 15 7 0.6929 -3.7004 4.8856 16 6 -0.7650 -3.8361 5.0040 17 6 -1.1131 -4.4240 6.3730 18 6 -2.6316 -4.5648 6.4965 19 6 -2.9743 -5.1444 7.8447 20 1 -2.1878 -5.3884 8.5434 21 6 -4.2921 -5.3642 8.1858 22 7 -5.2499 -5.0676 7.3348 23 14 -4.7169 -6.0820 9.8572 24 1 -3.4683 -6.3257 10.6232 25 1 -5.5766 -5.1272 10.6020 26 1 -5.4436 -7.3642 9.6751 27 1 -0.3632 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.7559 -0.0497 2.0976 31 1 2.0173 -2.6889 -0.0964 32 1 1.2868 -4.9417 0.5792 33 1 0.6761 -5.3875 2.9137 34 1 1.1462 -0.0802 3.7455 35 1 2.6216 -0.8036 4.4290 36 1 -0.2644 -1.3007 5.2712 37 1 1.0657 -0.6338 6.2549 38 1 0.7950 -2.9860 6.8560 39 1 2.3008 -2.8317 5.9167 40 1 -1.2308 -2.8561 4.9004 41 1 -1.1331 -4.4980 4.2201 42 1 -0.6473 -5.4041 6.4766 43 1 -0.7450 -3.7621 7.1569 44 1 -3.0969 -3.5846 6.3931 45 1 -3.0001 -5.2265 5.7126 46 1 -6.1768 -5.2218 7.5749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058155643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -70.045639 kcal Electronic energy + Delta-G solvation = -27472.853745 eV Core-core repulsion = 23681.085335 eV Total energy + Delta-G solvation = -3791.768410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.76725 -39.03581 -38.19455 -37.16934 -36.10085 -35.98767 -34.35122 -32.70342 -31.28526 -30.37138 -29.48015 -28.47996 -26.15261 -24.57177 -24.32748 -22.86344 -21.88467 -20.64756 -20.12684 -19.00290 -18.68260 -18.31987 -17.41295 -17.13214 -16.79802 -16.69915 -16.45325 -16.20451 -15.71059 -15.40899 -15.21532 -14.69630 -14.33286 -14.21636 -14.17419 -14.07335 -13.93202 -13.71258 -13.58101 -13.49266 -13.32713 -13.12954 -13.01602 -12.69181 -12.52242 -12.42005 -12.30809 -12.25876 -12.22361 -11.89605 -11.79790 -11.51360 -11.35986 -11.30263 -11.06099 -10.53887 -10.14239 -9.26694 -8.78432 -8.19302 -6.29593 -0.87723 0.34360 0.40325 1.40552 1.41454 1.50273 1.54279 2.41390 2.61960 2.67288 2.93155 3.14379 3.15018 3.74549 3.79970 3.83172 3.97385 4.04193 4.09706 4.15003 4.21128 4.31191 4.37107 4.43867 4.58142 4.60379 4.69794 4.79430 4.80947 4.88777 4.90153 4.98394 5.02724 5.09234 5.14356 5.21789 5.29585 5.34038 5.47511 5.53949 5.61068 5.75551 5.80232 5.87303 5.98643 6.08253 6.27299 6.51491 6.87545 7.39688 8.92685 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.002370 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.763163 B =11809.091851 C =11840.478743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.621 3.379 3 O -0.984 6.984 4 O -0.979 6.979 5 N -1.048 6.048 6 C 0.168 3.832 7 C -0.201 4.201 8 C -0.077 4.077 9 C -0.150 4.150 10 C 0.123 3.877 11 C -0.145 4.145 12 C -0.076 4.076 13 C -0.155 4.155 14 C 0.047 3.953 15 N -0.504 5.504 16 C 0.076 3.924 17 C -0.091 4.091 18 C 0.028 3.972 19 C -0.539 4.539 20 H 0.059 0.941 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.279 1.279 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.432 0.568 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.057 0.943 44 H -0.008 1.008 45 H -0.009 1.009 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.177 11.137 -13.743 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.718 3.282 3 O -0.975 6.975 4 O -0.969 6.969 5 N -0.797 5.797 6 C 0.071 3.929 7 C -0.223 4.223 8 C -0.096 4.096 9 C -0.170 4.170 10 C 0.026 3.974 11 C -0.152 4.152 12 C -0.113 4.113 13 C -0.193 4.193 14 C -0.080 4.080 15 N -0.220 5.220 16 C -0.048 4.048 17 C -0.129 4.129 18 C -0.010 4.010 19 C -0.577 4.577 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.787 3.213 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.205 1.205 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.271 0.729 31 H 0.179 0.821 32 H 0.168 0.832 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.744 10.936 -14.424 23.990 hybrid contribution -1.293 0.194 1.268 1.821 sum 14.450 11.130 -13.156 22.489 Atomic orbital electron populations 1.30342 1.23231 1.13388 1.13936 1.04555 0.79042 0.72439 0.72157 1.93595 1.79823 1.38459 1.85594 1.93518 1.78877 1.61408 1.63133 1.53228 1.65925 1.22415 1.38179 1.17137 0.98372 0.84331 0.93094 1.21954 1.05718 0.92859 1.01724 1.21051 0.96266 0.96843 0.95461 1.21278 1.03639 0.98940 0.93183 1.18604 0.97922 0.91724 0.89181 1.19938 1.06084 0.94716 0.94480 1.20529 1.01906 0.95654 0.93238 1.22140 1.00169 0.98261 0.98763 1.22368 1.00836 0.89495 0.95331 1.58677 1.12105 1.48671 1.02558 1.22110 0.84524 0.99535 0.98677 1.21466 0.96319 1.00028 0.95061 1.18941 0.91845 0.94849 0.95334 1.21703 0.92394 1.41706 1.01922 0.92268 1.25946 0.96560 0.96083 1.01177 1.70094 1.00191 1.49654 1.37395 0.85439 0.78447 0.78023 0.79386 1.18630 1.20381 1.20494 0.83347 0.82719 0.84359 0.72921 0.82087 0.83199 0.85767 0.88981 0.88950 0.92645 0.88686 0.89912 0.89430 0.94511 0.91309 0.92903 0.92421 0.98966 0.99045 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.50 10.71 113.37 1.21 -4.29 16 2 S 2.62 37.95 5.86 -56.49 -0.33 37.62 16 3 O -0.98 -19.99 18.08 -127.65 -2.31 -22.30 16 4 O -0.98 -20.24 15.04 -127.65 -1.92 -22.16 16 5 N -1.05 -14.93 5.13 -51.25 -0.26 -15.19 16 6 C 0.17 3.16 6.09 38.26 0.23 3.39 16 7 C -0.20 -4.00 9.24 22.38 0.21 -3.80 16 8 C -0.08 -1.56 10.03 22.17 0.22 -1.34 16 9 C -0.15 -3.62 9.21 22.53 0.21 -3.42 16 10 C 0.12 3.14 5.12 38.29 0.20 3.33 16 11 C -0.15 -3.07 5.76 -19.59 -0.11 -3.18 16 12 C -0.08 -1.27 4.89 29.89 0.15 -1.12 16 13 C -0.15 -3.10 6.03 30.74 0.19 -2.91 16 14 C 0.05 1.12 5.68 86.52 0.49 1.61 16 15 N -0.50 -14.16 4.51 -695.91 -3.14 -17.30 16 16 C 0.08 2.52 4.75 86.30 0.41 2.93 16 17 C -0.09 -3.60 5.04 30.59 0.15 -3.45 16 18 C 0.03 1.43 4.97 29.85 0.15 1.58 16 19 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 23 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.43 4.66 8.06 -96.76 -0.78 3.88 16 31 H 0.16 3.16 5.16 -2.91 -0.02 3.15 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.09 1.20 7.75 -2.39 -0.02 1.18 16 35 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.05 1.32 6.39 -2.39 -0.02 1.31 16 37 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.08 2.15 5.88 -2.39 -0.01 2.13 16 39 H 0.09 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.04 1.23 6.41 -2.39 -0.02 1.21 16 41 H 0.07 2.34 7.57 -2.39 -0.02 2.32 16 42 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.06 2.19 6.24 -2.39 -0.01 2.18 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.11 373.72 -1.04 -75.14 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.21 Total: 14.35 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 4.40 Total: -40.18 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -3.12 Total: -88.24 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -4.23 Total: -44.46 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 37.95 SS G_CDS: -0.33 Total: 37.62 kcal Total: -74.11 -1.04 -75.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058155643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.097 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds