Wall clock time and date at job start Tue Mar 31 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47624 * 240.00764 * 3 2 1 5 5 H 1.48502 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46751 * 120.00550 * 3 2 1 7 7 C 1.37879 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99720 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00343 * 269.99901 * 10 9 7 12 12 C 1.50697 * 109.47395 * 266.70021 * 11 10 9 13 13 C 1.34513 * 125.78880 * 86.97187 * 12 11 10 14 14 C 1.41379 * 106.84317 * 179.89057 * 13 12 11 15 15 C 1.34515 * 106.84084 * 0.37074 * 14 13 12 16 16 O 1.34299 * 125.79141 * 267.27980 * 12 11 10 17 17 C 1.34781 * 119.99615 * 90.00644 * 10 9 7 18 18 O 1.21278 * 119.99923 * 5.06860 * 17 10 9 19 19 C 1.50704 * 119.99900 * 185.08106 * 17 10 9 20 20 H 1.09002 * 109.24949 * 336.07677 * 19 17 10 21 21 C 1.52732 * 109.25838 * 95.54774 * 19 17 10 22 22 C 1.53324 * 108.38772 * 171.42197 * 21 19 17 23 23 C 1.52734 * 108.39542 * 290.15890 * 22 21 19 24 24 C 1.50631 * 110.59303 * 51.10297 * 23 22 21 25 25 C 1.38912 * 117.75232 * 162.33747 * 24 23 22 26 26 C 1.37937 * 120.54332 * 179.67977 * 25 24 23 27 27 C 1.38262 * 119.76980 * 359.89231 * 26 25 24 28 28 C 1.37929 * 119.77546 * 0.13591 * 27 26 25 29 29 C 1.37664 * 122.56203 * 342.11345 * 24 23 22 30 30 H 0.96997 * 120.00293 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.47026 * 60.00169 * 9 7 2 32 32 H 1.09004 * 109.47189 * 300.00463 * 9 7 2 33 33 H 1.08996 * 109.46825 * 26.70746 * 11 10 9 34 34 H 1.09004 * 109.46811 * 146.70340 * 11 10 9 35 35 H 1.07999 * 126.57575 * 0.02562 * 13 12 11 36 36 H 1.08001 * 126.58286 * 180.16317 * 14 13 12 37 37 H 1.07999 * 125.79251 * 179.75077 * 15 14 13 38 38 H 1.09003 * 109.67606 * 51.69693 * 21 19 17 39 39 H 1.08996 * 109.67758 * 291.15069 * 21 19 17 40 40 H 1.09000 * 109.67293 * 170.43253 * 22 21 19 41 41 H 1.08997 * 109.70926 * 49.89965 * 22 21 19 42 42 H 1.09000 * 109.24983 * 290.81419 * 23 22 21 43 43 H 1.08997 * 109.21971 * 171.36919 * 23 22 21 44 44 H 1.07998 * 119.72819 * 359.65283 * 25 24 23 45 45 H 1.07992 * 120.11524 * 179.87077 * 26 25 24 46 46 H 1.08002 * 120.11568 * 180.12385 * 27 26 25 47 47 H 1.07997 * 119.73122 * 179.76165 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6967 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6782 -4.1688 -1.2711 12 6 1.8091 -5.3352 -1.6651 13 6 0.6636 -5.2611 -2.3662 14 6 0.1848 -6.5836 -2.5096 15 6 1.0621 -7.3860 -1.8804 16 8 2.0439 -6.6243 -1.3707 17 6 2.6418 -4.1253 1.1649 18 8 2.1802 -3.7279 2.2137 19 6 3.7062 -5.1923 1.1663 20 1 3.6948 -5.7124 0.2084 21 6 5.0725 -4.5406 1.3694 22 6 6.1100 -5.6490 1.5831 23 6 5.8547 -6.2923 2.9446 24 6 4.4080 -6.6895 3.0799 25 6 4.0788 -7.6062 4.0703 26 6 2.7706 -8.0053 4.2493 27 6 1.7778 -7.4876 3.4381 28 6 2.1027 -6.5777 2.4537 29 6 3.4201 -6.1773 2.2694 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8897 33 1 2.6300 -3.4022 -2.0443 34 1 3.7086 -4.5057 -1.1571 35 1 0.1999 -4.3638 -2.7484 36 1 -0.7147 -6.8905 -3.0227 37 1 0.9891 -8.4605 -1.7985 38 1 5.0430 -3.8915 2.2446 39 1 5.3353 -3.9567 0.4874 40 1 7.1128 -5.2222 1.5610 41 1 6.0131 -6.3995 0.7986 42 1 6.1072 -5.5812 3.7311 43 1 6.4816 -7.1781 3.0462 44 1 4.8536 -8.0101 4.7051 45 1 2.5228 -8.7200 5.0200 46 1 0.7515 -7.7947 3.5747 47 1 1.3272 -6.1767 1.8180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058185773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:25 Heat of formation + Delta-G solvation = -1.841971 kcal Electronic energy + Delta-G solvation = -30336.495104 eV Core-core repulsion = 26450.354708 eV Total energy + Delta-G solvation = -3886.140396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34484 -40.41742 -38.49902 -35.82400 -35.22908 -32.92259 -32.74872 -32.22898 -30.17498 -30.08238 -29.03723 -27.32462 -25.48962 -24.31389 -22.82186 -22.59472 -21.85491 -21.49935 -20.49197 -19.38607 -18.48747 -17.33350 -16.67785 -16.40988 -16.27828 -15.83301 -15.37616 -15.10458 -15.09236 -14.62134 -14.38531 -14.07454 -13.68336 -13.49762 -13.21646 -12.84178 -12.67599 -12.65105 -12.58656 -12.51840 -12.30277 -12.07483 -11.95915 -11.66525 -11.39037 -11.27625 -11.19223 -10.98543 -10.93344 -10.63292 -10.46285 -10.23494 -10.19879 -9.74781 -9.67666 -8.93863 -8.53333 -8.46396 -8.33803 -8.31738 -7.80489 -6.07045 -4.12455 1.54488 1.59307 1.89293 2.81510 3.08976 3.29942 3.35093 3.36205 3.44911 3.83506 4.06077 4.42241 4.66860 4.74277 4.89562 4.93738 5.08582 5.10432 5.15178 5.21254 5.24676 5.26874 5.30271 5.36300 5.47104 5.53555 5.57910 5.61385 5.75868 5.85002 5.90036 5.91967 6.00129 6.02415 6.07065 6.17417 6.20705 6.29226 6.30174 6.39676 6.64951 6.70879 6.71654 6.84585 6.99743 7.20357 7.31577 7.42773 7.48294 7.88840 8.18954 8.29769 8.85801 9.02801 9.52914 11.01017 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.009377 B = 0.004622 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.435944 B = 6056.858414 C = 7582.148116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.594 5.594 11 C 0.189 3.811 12 C -0.029 4.029 13 C -0.192 4.192 14 C -0.214 4.214 15 C -0.048 4.048 16 O -0.175 6.175 17 C 0.519 3.481 18 O -0.525 6.525 19 C -0.074 4.074 20 H 0.100 0.900 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.080 4.080 24 C -0.074 4.074 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.091 4.091 29 C -0.047 4.047 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.197 0.803 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 -17.443 -1.206 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.326 5.326 11 C 0.064 3.936 12 C -0.081 4.081 13 C -0.213 4.213 14 C -0.233 4.233 15 C -0.116 4.116 16 O -0.071 6.071 17 C 0.305 3.695 18 O -0.401 6.401 19 C -0.096 4.096 20 H 0.118 0.882 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.117 4.117 24 C -0.074 4.074 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.109 4.109 29 C -0.047 4.047 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.257 -17.156 -0.462 19.045 hybrid contribution -0.147 0.908 -0.212 0.944 sum 8.111 -16.248 -0.675 18.172 Atomic orbital electron populations 1.69920 1.06006 1.27173 1.50039 1.24921 0.94848 0.99167 0.94972 0.86574 0.79547 0.82759 0.78644 1.20178 1.21189 1.20183 1.21384 0.93334 0.90544 1.51597 0.92367 1.19324 0.87449 0.81763 0.98677 1.48322 1.46269 1.34738 1.03238 1.19909 0.94786 0.89744 0.89123 1.23304 0.99739 0.83225 1.01795 1.21694 0.96746 0.98419 1.04391 1.21818 1.02254 0.93268 1.05957 1.23929 0.89550 0.97015 1.01135 1.84017 1.44139 1.17340 1.61609 1.20160 0.82744 0.82468 0.84126 1.90687 1.57564 1.60894 1.30925 1.20354 0.95777 0.94647 0.98775 0.88248 1.21480 0.92021 0.97802 1.03343 1.21539 0.98787 0.97938 0.97073 1.20472 0.92331 1.00624 0.98230 1.19515 0.95105 0.97152 0.95647 1.21017 0.96484 0.98687 0.98385 1.20975 0.93139 1.00451 0.99565 1.20991 0.99119 0.97954 0.96278 1.21122 0.95758 0.96150 0.97893 1.19086 0.93025 0.96429 0.96185 0.92623 0.94903 0.93712 0.86505 0.89814 0.83271 0.83804 0.78626 0.90589 0.90760 0.91086 0.91493 0.90594 0.90955 0.86500 0.86474 0.86413 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.25 6.30 5.18 -5.19 -0.03 6.28 16 10 N -0.59 -12.36 2.45 -176.43 -0.43 -12.79 16 11 C 0.19 3.07 5.56 -5.20 -0.03 3.04 16 12 C -0.03 -0.46 6.70 -35.63 -0.24 -0.70 16 13 C -0.19 -2.98 10.81 -39.70 -0.43 -3.41 16 14 C -0.21 -2.83 10.91 -39.70 -0.43 -3.26 16 15 C -0.05 -0.60 12.09 29.42 0.36 -0.24 16 16 O -0.18 -2.58 9.76 5.70 0.06 -2.52 16 17 C 0.52 10.90 5.48 -10.98 -0.06 10.84 16 18 O -0.53 -13.41 15.40 5.56 0.09 -13.33 16 19 C -0.07 -1.22 1.87 -93.09 -0.17 -1.39 16 20 H 0.10 1.50 5.05 -51.93 -0.26 1.24 16 21 C -0.11 -1.55 5.23 -26.70 -0.14 -1.69 16 22 C -0.12 -1.27 5.98 -26.70 -0.16 -1.43 16 23 C -0.08 -0.90 5.67 -28.05 -0.16 -1.05 16 24 C -0.07 -1.05 5.74 -104.62 -0.60 -1.65 16 25 C -0.13 -1.63 9.61 -39.44 -0.38 -2.01 16 26 C -0.12 -1.59 10.05 -39.68 -0.40 -1.98 16 27 C -0.13 -1.83 10.05 -39.69 -0.40 -2.23 16 28 C -0.09 -1.55 8.53 -39.44 -0.34 -1.89 16 29 C -0.05 -0.77 5.11 -104.61 -0.53 -1.30 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 33 H 0.12 1.83 8.05 -51.93 -0.42 1.41 16 34 H 0.08 1.14 6.28 -51.93 -0.33 0.82 16 35 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.07 0.98 8.06 -51.93 -0.42 0.57 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.12 1.18 8.05 -52.49 -0.42 0.75 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.11 2.15 7.24 -52.49 -0.38 1.77 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -33.45 386.31 -10.11 -43.56 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.80 Total: 5.50 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -4.56 Total: -17.27 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.30 Total: -38.20 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.14 Total: -15.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.45 -10.11 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058185773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.718 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds