Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39759 * 125.83633 * 2 1 4 4 C 1.36108 * 107.82607 * 180.12598 * 3 2 1 5 5 N 1.39475 * 126.21522 * 179.90297 * 4 3 2 6 6 C 1.34777 * 120.00058 * 359.69223 * 5 4 3 7 7 O 1.21292 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46817 * 179.97438 * 8 6 5 10 10 C 1.34242 * 126.49870 * 264.68914 * 9 8 6 11 11 N 1.36835 * 109.92559 * 179.83151 * 10 9 8 12 12 H 0.97005 * 125.06161 * 180.17873 * 11 10 9 13 13 C 1.37683 * 109.87576 * 0.44770 * 11 10 9 14 14 C 1.39124 * 133.51225 * 179.71620 * 13 11 10 15 15 C 1.37752 * 119.78412 * 180.02562 * 14 13 11 16 16 C 1.38830 * 120.66298 * 359.97438 * 15 14 13 17 17 C 1.36621 * 120.52987 * 0.02562 * 16 15 14 18 18 C 1.39633 * 119.76640 * 0.02562 * 17 16 15 19 19 N 1.35260 * 107.56901 * 359.64316 * 4 3 2 20 20 C 1.46500 * 126.04674 * 180.19581 * 19 4 3 21 21 C 1.50697 * 109.47340 * 89.99813 * 20 19 4 22 22 H 1.07996 * 119.99913 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99803 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00226 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99753 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47043 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47069 * 119.99728 * 25 23 21 28 28 H 1.48495 * 109.47020 * 239.99584 * 25 23 21 29 29 N 1.30846 * 125.84058 * 179.72024 * 2 1 3 30 30 H 1.09004 * 109.46749 * 270.25737 * 1 2 3 31 31 H 1.09001 * 109.47466 * 30.25361 * 1 2 3 32 32 H 1.08998 * 109.47554 * 150.25702 * 1 2 3 33 33 H 1.07997 * 126.08698 * 0.03446 * 3 2 1 34 34 H 0.97009 * 120.00092 * 179.41383 * 5 4 3 35 35 H 1.08993 * 109.46894 * 299.99913 * 8 6 5 36 36 H 1.09000 * 109.47161 * 59.99772 * 8 6 5 37 37 H 1.07994 * 125.04053 * 359.97438 * 10 9 8 38 38 H 1.08003 * 120.10767 * 359.97438 * 14 13 11 39 39 H 1.07999 * 119.66674 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.73705 * 180.02562 * 16 15 14 41 41 H 1.08002 * 120.12061 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.46711 * 209.99558 * 20 19 4 43 43 H 1.08994 * 109.47076 * 329.99274 * 20 19 4 44 44 H 0.97005 * 119.99880 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7122 -0.0028 5 7 4.7512 1.5276 -0.0057 6 6 4.6156 2.8685 -0.0121 7 8 3.5095 3.3662 -0.0158 8 6 5.8383 3.7494 -0.0146 9 6 5.4153 5.1958 -0.0225 10 6 5.2887 5.9848 -1.1012 11 7 4.8816 7.2343 -0.7198 12 1 4.7194 7.9760 -1.3235 13 6 4.7423 7.2837 0.6491 14 6 4.3679 8.2861 1.5383 15 6 4.3229 8.0206 2.8893 16 6 4.6473 6.7609 3.3744 17 6 5.0176 5.7620 2.5192 18 6 5.0710 6.0093 1.1460 19 7 3.6092 -0.6404 0.0035 20 6 4.7870 -1.5115 0.0072 21 6 5.1914 -1.8036 1.4292 22 1 4.6277 -1.3821 2.2483 23 6 6.2816 -2.6080 1.6845 24 7 6.9684 -3.1209 0.6871 25 14 6.7833 -2.9695 3.4472 26 1 5.8553 -2.2779 4.3777 27 1 6.7261 -4.4338 3.6878 28 1 8.1675 -2.4837 3.6774 29 7 2.2731 -1.0607 0.0052 30 1 -0.3633 0.0046 1.0277 31 1 -0.3634 0.8877 -0.5178 32 1 -0.3634 -0.8922 -0.5098 33 1 1.9901 2.1597 0.0005 34 1 5.6358 1.1296 0.0010 35 1 6.4323 3.5490 0.8770 36 1 6.4347 3.5408 -0.9029 37 1 5.4776 5.6782 -2.1193 38 1 4.1141 9.2694 1.1706 39 1 4.0316 8.8000 3.5778 40 1 4.6065 6.5691 4.4365 41 1 5.2689 4.7846 2.9039 42 1 4.5497 -2.4455 -0.5022 43 1 5.6081 -1.0145 -0.5093 44 1 7.7352 -3.6871 0.8667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058192525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = 97.159942 kcal Electronic energy + Delta-G solvation = -28036.150047 eV Core-core repulsion = 24148.481015 eV Total energy + Delta-G solvation = -3887.669033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40324 -40.70969 -38.97200 -36.96709 -34.61871 -33.70581 -33.19375 -32.02319 -30.45627 -29.38178 -29.10571 -28.35178 -26.85249 -25.98766 -22.94396 -22.89057 -21.84763 -21.77934 -19.85715 -19.47789 -18.97039 -17.88729 -16.91988 -16.63115 -16.50401 -16.25171 -15.57103 -15.19976 -14.90365 -14.54923 -14.30855 -14.12799 -14.00990 -13.82002 -13.63640 -13.02757 -12.80590 -12.76005 -12.67975 -12.46077 -12.20975 -11.95190 -11.74917 -11.72167 -11.53798 -11.46874 -11.03204 -10.89374 -10.88973 -10.33598 -10.26196 -9.91110 -9.76610 -9.64326 -9.35569 -8.71224 -8.27397 -7.85969 -7.74033 -7.36241 -6.32064 -4.40183 1.06701 1.58181 2.38465 2.45678 2.98637 3.06814 3.16283 3.20915 3.25423 3.32042 3.68003 3.84066 3.95072 4.26421 4.61791 4.67570 4.79404 4.97343 5.01505 5.02782 5.13221 5.19770 5.41718 5.44113 5.47211 5.59933 5.68086 5.75651 5.82101 6.04829 6.07224 6.20203 6.25441 6.35088 6.40233 6.51094 6.55572 6.61499 6.69036 6.74739 6.87638 7.07966 7.08937 7.40556 7.57919 7.62506 7.71942 7.82163 8.00140 8.43868 8.66369 8.75746 9.27504 10.75052 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.003100 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.523020 B = 9029.675529 C =10205.103710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.304 3.696 5 N -0.644 5.644 6 C 0.517 3.483 7 O -0.504 6.504 8 C -0.061 4.061 9 C -0.150 4.150 10 C 0.065 3.935 11 N -0.595 5.595 12 H 0.415 0.585 13 C 0.095 3.905 14 C -0.133 4.133 15 C -0.101 4.101 16 C -0.148 4.148 17 C -0.065 4.065 18 C -0.088 4.088 19 N -0.346 5.346 20 C 0.257 3.743 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 N -0.288 5.288 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.415 0.585 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.170 0.830 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 21.493 -2.436 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.329 4.329 4 C 0.082 3.918 5 N -0.291 5.291 6 C 0.303 3.697 7 O -0.377 6.377 8 C -0.101 4.101 9 C -0.158 4.158 10 C -0.061 4.061 11 N -0.198 5.198 12 H 0.251 0.749 13 C -0.012 4.012 14 C -0.154 4.154 15 C -0.120 4.120 16 C -0.167 4.167 17 C -0.084 4.084 18 C -0.093 4.093 19 N -0.132 5.132 20 C 0.139 3.861 21 C -0.577 4.577 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.206 1.206 29 N -0.113 5.113 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.252 0.748 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.187 0.813 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.470 20.495 -2.598 20.711 hybrid contribution 0.914 0.521 0.629 1.226 sum -0.556 21.016 -1.968 21.115 Atomic orbital electron populations 1.20009 0.87721 1.02222 1.02096 1.22015 0.96446 0.91127 1.01912 1.21258 0.89141 1.00354 1.22136 1.17958 0.88181 0.83275 1.02404 1.42892 1.08099 1.05723 1.72423 1.20693 0.91757 0.80986 0.76282 1.90644 1.26812 1.73599 1.46668 1.19885 0.95314 0.89489 1.05426 1.19480 1.10753 0.93962 0.91576 1.21538 1.01559 0.84078 0.98966 1.41647 1.60343 1.12236 1.05530 0.74882 1.18217 1.03364 0.96184 0.83388 1.19975 1.05673 0.97346 0.92416 1.20771 1.00079 0.97065 0.94134 1.20619 1.03120 0.93372 0.99616 1.20313 0.97873 0.99072 0.91125 1.18987 1.04346 0.92747 0.93217 1.49329 1.06463 1.02254 1.55107 1.19604 0.77882 0.89758 0.98867 1.21391 1.13157 1.31748 0.91409 0.91662 1.24933 0.95715 0.94895 0.98164 1.69926 1.19182 1.32661 1.31056 0.86312 0.78353 0.78417 0.83710 1.19540 1.20567 1.20623 1.77334 0.86202 1.21833 1.25968 0.91371 0.91240 0.91617 0.82246 0.74816 0.87622 0.87734 0.81314 0.86523 0.85984 0.86132 0.86166 0.92646 0.93803 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.44 36.00 0.38 -0.58 16 2 C 0.05 1.03 7.21 -82.45 -0.59 0.44 16 3 C -0.30 -6.27 9.58 -39.78 -0.38 -6.65 16 4 C 0.30 6.51 7.66 -153.16 -1.17 5.34 16 5 N -0.64 -11.19 5.42 -11.46 -0.06 -11.26 16 6 C 0.52 8.11 7.79 -10.98 -0.09 8.03 16 7 O -0.50 -9.49 13.16 5.55 0.07 -9.42 16 8 C -0.06 -0.68 6.23 -29.03 -0.18 -0.86 16 9 C -0.15 -1.82 4.81 -102.71 -0.49 -2.32 16 10 C 0.06 0.64 11.73 -16.73 -0.20 0.45 16 11 N -0.59 -5.53 6.07 -10.65 -0.06 -5.59 16 12 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 13 C 0.10 1.11 7.28 -83.99 -0.61 0.50 16 14 C -0.13 -1.37 10.08 -39.43 -0.40 -1.76 16 15 C -0.10 -1.02 10.01 -39.54 -0.40 -1.42 16 16 C -0.15 -1.65 9.97 -39.95 -0.40 -2.05 16 17 C -0.07 -0.84 10.05 -39.65 -0.40 -1.24 16 18 C -0.09 -1.17 6.35 -105.14 -0.67 -1.84 16 19 N -0.35 -8.21 3.60 -61.58 -0.22 -8.44 16 20 C 0.26 6.43 6.00 -5.19 -0.03 6.40 16 21 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 22 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 25 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 N -0.29 -6.85 12.56 33.65 0.42 -6.43 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.16 3.33 5.83 -52.49 -0.31 3.02 16 34 H 0.42 6.56 7.97 -40.82 -0.33 6.24 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -34.50 380.54 -10.04 -44.53 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.58 Total: 9.46 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -6.05 Total: -10.72 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.81 Total: -55.25 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.50 -10.04 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058192525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.693 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds