Wall clock time and date at job start Tue Mar 31 2020 07:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47053 * 235.01741 * 3 2 1 5 5 N 1.46497 * 109.47261 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00076 * 271.06306 * 5 4 3 7 7 C 1.50702 * 109.46804 * 278.17673 * 6 5 4 8 8 H 1.07999 * 120.00231 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99573 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99869 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47361 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47522 * 120.00125 * 11 9 7 14 14 H 1.48507 * 109.47103 * 239.99777 * 11 9 7 15 15 C 1.34782 * 119.99965 * 91.05874 * 5 4 3 16 16 O 1.21550 * 119.99551 * 6.11819 * 15 5 4 17 17 C 1.47836 * 120.00083 * 186.11311 * 15 5 4 18 18 C 1.39579 * 120.14610 * 150.22365 * 17 15 5 19 19 C 1.37955 * 119.85553 * 180.02562 * 18 17 15 20 20 C 1.38356 * 120.14514 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.85395 * 179.97438 * 20 19 18 22 22 N 1.46503 * 109.46956 * 90.00118 * 21 20 19 23 23 C 1.34433 * 126.82460 * 125.00399 * 22 21 20 24 24 N 1.30836 * 108.07467 * 179.73693 * 23 22 21 25 25 C 1.33234 * 109.82865 * 0.26310 * 24 23 22 26 26 N 1.30718 * 108.95058 * 359.97438 * 25 24 23 27 27 C 1.38364 * 120.29486 * 0.23141 * 20 19 18 28 28 C 1.37963 * 120.14007 * 359.49081 * 27 20 19 29 29 H 1.08995 * 109.46851 * 115.02018 * 3 2 1 30 30 H 1.08995 * 109.47280 * 355.01682 * 3 2 1 31 31 H 1.09000 * 109.47151 * 59.99678 * 4 3 2 32 32 H 1.09005 * 109.46981 * 300.00109 * 4 3 2 33 33 H 1.08997 * 109.46900 * 38.17819 * 6 5 4 34 34 H 1.09001 * 109.46780 * 158.18079 * 6 5 4 35 35 H 0.97000 * 119.99870 * 180.02562 * 10 9 7 36 36 H 1.08001 * 120.06928 * 359.97438 * 18 17 15 37 37 H 1.08004 * 119.92938 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47441 * 329.99835 * 21 20 19 39 39 H 1.09001 * 109.47186 * 209.99657 * 21 20 19 40 40 H 1.07996 * 125.95928 * 359.97438 * 23 22 21 41 41 H 1.08001 * 125.52743 * 180.02562 * 25 24 23 42 42 H 1.07994 * 119.92753 * 179.74986 * 27 20 19 43 43 H 1.07995 * 120.07292 * 180.25937 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8279 1.1819 5 7 4.5826 0.8291 1.1816 6 6 5.3161 -0.2232 1.8893 7 6 5.3923 0.1167 3.3555 8 1 4.9392 1.0254 3.7234 9 6 6.0403 -0.7325 4.2271 10 7 6.5916 -1.8394 3.7791 11 14 6.1342 -0.3117 6.0447 12 1 5.4403 0.9780 6.2907 13 1 5.4803 -1.3850 6.8358 14 1 7.5572 -0.1933 6.4525 15 6 5.2555 1.7983 0.5302 16 8 4.6520 2.7315 0.0378 17 6 6.7276 1.7265 0.4147 18 6 7.3722 2.2856 -0.6899 19 6 8.7461 2.2147 -0.7919 20 6 9.4850 1.5906 0.1975 21 6 10.9855 1.5164 0.0791 22 7 11.5842 2.6930 0.7143 23 6 12.5152 2.6991 1.6840 24 7 12.7905 3.9447 1.9747 25 6 12.0544 4.7584 1.2189 26 7 11.2975 4.0387 0.4328 27 6 8.8519 1.0296 1.2925 28 6 7.4790 1.0987 1.4094 29 1 2.9710 0.4354 -0.9312 30 1 2.9718 -1.0229 0.0893 31 1 2.7544 0.3932 2.1131 32 1 2.7538 1.8516 1.0926 33 1 4.7989 -1.1743 1.7631 34 1 6.3240 -0.3007 1.4814 35 1 7.0472 -2.4370 4.3924 36 1 6.7965 2.7720 -1.4635 37 1 9.2461 2.6466 -1.6463 38 1 11.2661 1.4895 -0.9738 39 1 11.3448 0.6141 0.5741 40 1 12.9611 1.8278 2.1405 41 1 12.0796 5.8377 1.2499 42 1 9.4341 0.5404 2.0592 43 1 6.9863 0.6641 2.2666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:02 Heat of formation + Delta-G solvation = 133.591914 kcal Electronic energy + Delta-G solvation = -28318.894891 eV Core-core repulsion = 24367.379756 eV Total energy + Delta-G solvation = -3951.515135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -42.06311 -40.07832 -38.28514 -36.68250 -35.52406 -34.60649 -33.18703 -31.78853 -31.24392 -30.74260 -30.27921 -27.59870 -26.97418 -24.30587 -23.42019 -22.41360 -22.33765 -21.87266 -21.01562 -19.12560 -17.57111 -17.41807 -16.88717 -16.66271 -16.32066 -15.70020 -15.47008 -14.86343 -14.81133 -14.71094 -14.62900 -14.22366 -14.11817 -13.87717 -13.51994 -13.31790 -12.98116 -12.82550 -12.57753 -12.41347 -12.30427 -12.19873 -11.94432 -11.69443 -11.66218 -11.26936 -11.12194 -11.01059 -10.71107 -10.40221 -10.12195 -10.03963 -9.94720 -9.81287 -9.73405 -9.28159 -8.88740 -8.64201 -8.31826 -8.02179 -6.45015 -4.54614 1.05992 1.62288 1.76270 2.36410 2.81125 2.91689 2.94353 3.07933 3.18548 3.21993 3.31733 3.57953 4.10859 4.18026 4.25958 4.31064 4.35780 4.64042 4.84218 4.86357 5.02855 5.10230 5.17714 5.28235 5.31433 5.35336 5.36158 5.62540 5.75344 5.92448 6.00130 6.13949 6.19528 6.22159 6.38818 6.42139 6.46863 6.59893 6.73257 6.80005 6.90114 6.96595 7.23508 7.33076 7.50901 7.67571 7.74510 8.04044 8.05676 8.53982 8.74590 9.14688 10.59305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.003558 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.106859 B = 7866.876457 C = 9908.949261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.205 3.795 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.894 3.106 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.558 3.442 16 O -0.563 6.563 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.109 4.109 20 C -0.102 4.102 21 C 0.171 3.829 22 N -0.371 5.371 23 C 0.251 3.749 24 N -0.551 5.551 25 C 0.190 3.810 26 N -0.307 5.307 27 C -0.113 4.113 28 C -0.096 4.096 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.217 0.783 41 H 0.214 0.786 42 H 0.123 0.877 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 1.682 -6.918 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.001 4.001 5 N -0.318 5.318 6 C 0.086 3.914 7 C -0.586 4.586 8 H 0.086 0.914 9 C -0.134 4.134 10 N -0.516 5.516 11 Si 0.721 3.279 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.348 3.652 16 O -0.444 6.444 17 C -0.124 4.124 18 C -0.091 4.091 19 C -0.127 4.127 20 C -0.104 4.104 21 C 0.050 3.950 22 N -0.161 5.161 23 C -0.046 4.046 24 N -0.278 5.278 25 C -0.113 4.113 26 N -0.135 5.135 27 C -0.131 4.131 28 C -0.113 4.113 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.234 0.766 41 H 0.230 0.770 42 H 0.141 0.859 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.276 2.301 -7.423 11.353 hybrid contribution 0.622 -0.255 1.155 1.336 sum 8.897 2.047 -6.268 11.074 Atomic orbital electron populations 1.81179 1.13055 1.09383 1.09041 1.29076 0.95093 0.92667 0.92839 1.19764 0.81396 1.04659 1.02829 1.21137 0.81244 1.00743 0.96935 1.48032 1.05413 1.27916 1.50397 1.20407 0.94089 0.85499 0.91394 1.21498 1.36887 1.08043 0.92141 0.91439 1.24966 0.94656 0.94453 0.99327 1.69927 1.34800 1.11046 1.35829 0.86480 0.78249 0.78915 0.84279 1.19406 1.20567 1.20529 1.18353 0.87122 0.81885 0.77875 1.90697 1.69993 1.33561 1.50138 1.20004 0.93364 1.02013 0.97013 1.21114 0.94067 0.96849 0.97116 1.20737 0.93486 0.99585 0.98929 1.19827 0.93298 1.00759 0.96475 1.20756 0.90836 0.83980 0.99441 1.50671 1.30388 1.05904 1.29178 1.26074 0.90747 0.97832 0.89902 1.70513 1.28905 0.99950 1.28462 1.25978 0.92046 1.01236 0.92001 1.78092 1.23598 0.86816 1.24977 1.21062 0.95230 1.00004 0.96832 1.23501 0.93967 0.92749 1.01072 0.87452 0.86909 0.88989 0.89747 0.94442 0.91192 0.92113 0.85501 0.86070 0.88560 0.87071 0.76636 0.76993 0.85904 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.40 18.54 42.15 0.78 -6.62 16 2 C 0.22 3.12 15.43 -20.76 -0.32 2.80 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.12 1.94 5.43 -4.04 -0.02 1.92 16 5 N -0.59 -10.64 2.46 -176.17 -0.43 -11.08 16 6 C 0.21 4.10 4.65 -5.19 -0.02 4.07 16 7 C -0.55 -12.32 7.47 -34.44 -0.26 -12.58 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.64 5.33 -17.82 -0.09 1.55 16 10 N -0.88 -20.84 13.29 55.43 0.74 -20.10 16 11 Si 0.89 18.61 29.54 -169.99 -5.02 13.59 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 C 0.56 10.66 7.46 -12.33 -0.09 10.57 16 16 O -0.56 -11.75 16.24 5.32 0.09 -11.66 16 17 C -0.12 -2.15 5.58 -104.97 -0.59 -2.74 16 18 C -0.07 -1.13 9.60 -39.19 -0.38 -1.51 16 19 C -0.11 -1.47 9.68 -39.64 -0.38 -1.85 16 20 C -0.10 -1.33 5.34 -104.53 -0.56 -1.89 16 21 C 0.17 1.60 6.67 -5.19 -0.03 1.57 16 22 N -0.37 -4.25 3.68 -63.81 -0.24 -4.48 16 23 C 0.25 2.61 12.63 -90.65 -1.14 1.47 16 24 N -0.55 -6.99 11.19 -15.83 -0.18 -7.16 16 25 C 0.19 2.34 13.03 -91.81 -1.20 1.15 16 26 N -0.31 -4.18 12.56 29.29 0.37 -3.81 16 27 C -0.11 -1.71 9.68 -39.64 -0.38 -2.10 16 28 C -0.10 -1.72 7.48 -39.18 -0.29 -2.02 16 29 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 32 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 33 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.07 1.43 4.08 -51.95 -0.21 1.22 16 35 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 36 H 0.13 1.88 7.92 -52.49 -0.42 1.46 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.11 0.71 8.03 -51.93 -0.42 0.30 16 40 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.21 4.18 3.02 -52.49 -0.16 4.02 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -30.20 379.59 -9.05 -39.25 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.93 Total: 6.68 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -5.95 Total: -0.33 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 1.04 Total: -53.25 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.20 -9.05 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.837 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.21 seconds