Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39731 * 125.77561 * 2 1 4 4 C 1.36158 * 107.86202 * 180.02562 * 3 2 1 5 5 N 1.39345 * 126.26848 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00303 * 0.02562 * 5 4 3 7 7 O 1.21674 * 119.99696 * 354.72691 * 6 5 4 8 8 C 1.47008 * 120.00454 * 174.72845 * 6 5 4 9 9 C 1.35889 * 125.43396 * 4.98810 * 8 6 5 10 10 C 1.41586 * 107.72967 * 179.84886 * 9 8 6 11 11 C 1.40103 * 133.37763 * 180.15891 * 10 9 8 12 12 C 1.36440 * 119.82966 * 180.29456 * 11 10 9 13 13 C 1.38946 * 120.61369 * 359.97438 * 12 11 10 14 14 C 1.37673 * 120.64944 * 359.97438 * 13 12 11 15 15 C 1.39226 * 119.80892 * 0.02562 * 14 13 12 16 16 N 1.37495 * 133.17460 * 180.02562 * 15 14 13 17 17 C 1.46499 * 125.60657 * 0.02562 * 16 15 14 18 18 N 1.35816 * 107.46879 * 359.97438 * 4 3 2 19 19 C 1.46498 * 126.09597 * 179.97438 * 18 4 3 20 20 C 1.50699 * 109.47088 * 269.99870 * 19 18 4 21 21 H 1.08002 * 119.99618 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00121 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99783 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00060 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46873 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46878 * 119.99702 * 24 22 20 27 27 H 1.48494 * 109.47120 * 240.00151 * 24 22 20 28 28 N 1.30831 * 125.78321 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47280 * 269.98098 * 1 2 3 30 30 H 1.08997 * 109.47461 * 29.98594 * 1 2 3 31 31 H 1.09005 * 109.46976 * 149.98652 * 1 2 3 32 32 H 1.07997 * 126.07420 * 0.03425 * 3 2 1 33 33 H 0.97005 * 120.00267 * 180.02562 * 5 4 3 34 34 H 1.08000 * 126.13835 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.08456 * 0.27149 * 11 10 9 36 36 H 1.08000 * 119.69367 * 180.02562 * 12 11 10 37 37 H 1.07996 * 119.67321 * 179.97438 * 13 12 11 38 38 H 1.07995 * 120.09906 * 180.02562 * 14 13 12 39 39 H 1.09004 * 109.47394 * 274.72712 * 17 16 15 40 40 H 1.08995 * 109.47131 * 34.72709 * 17 16 15 41 41 H 1.09010 * 109.47199 * 154.72829 * 17 16 15 42 42 H 1.08996 * 109.47221 * 29.99902 * 19 18 4 43 43 H 1.09001 * 109.47170 * 149.99717 * 19 18 4 44 44 H 0.97003 * 119.99964 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6194 0.7149 -0.0006 5 7 4.7494 1.5303 -0.0013 6 6 4.6128 2.8711 -0.0009 7 8 3.5072 3.3700 -0.0968 8 6 5.7996 3.7309 0.1153 9 6 7.0875 3.2979 0.1318 10 6 7.9230 4.4346 0.2527 11 6 9.3121 4.6053 0.3172 12 6 9.8368 5.8586 0.4421 13 6 9.0059 6.9704 0.5057 14 6 7.6379 6.8288 0.4433 15 6 7.0786 5.5602 0.3158 16 7 5.7832 5.1076 0.2295 17 6 4.5828 5.9471 0.2548 18 7 3.6089 -0.6433 -0.0004 19 6 4.7859 -1.5155 -0.0013 20 6 5.1881 -1.8148 -1.4225 21 1 4.6237 -1.3967 -2.2429 22 6 6.2773 -2.6215 -1.6754 23 7 6.9649 -3.1302 -0.6763 24 14 6.7763 -2.9920 -3.4370 25 1 5.8469 -2.3051 -4.3695 26 1 8.1606 -2.5085 -3.6714 27 1 6.7175 -4.4573 -3.6704 28 7 2.2720 -1.0613 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5141 32 1 1.9874 2.1599 0.0005 33 1 5.6343 1.1330 -0.0020 34 1 7.4153 2.2712 0.0627 35 1 9.9659 3.7470 0.2685 36 1 10.9079 5.9877 0.4912 37 1 9.4375 7.9554 0.6049 38 1 7.0005 7.6991 0.4931 39 1 4.2954 6.1391 1.2886 40 1 4.7902 6.8926 -0.2462 41 1 3.7698 5.4342 -0.2591 42 1 5.6082 -1.0167 0.5116 43 1 4.5484 -2.4468 0.5129 44 1 7.7309 -3.6980 -0.8542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = 107.729751 kcal Electronic energy + Delta-G solvation = -28278.365665 eV Core-core repulsion = 24391.154974 eV Total energy + Delta-G solvation = -3887.210691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.83733 -40.75995 -39.07146 -37.00364 -34.99219 -33.87258 -33.15468 -32.07733 -30.47452 -29.90788 -29.04374 -28.00974 -26.49096 -26.05630 -24.40564 -22.87924 -21.91579 -21.48178 -20.62556 -19.81286 -19.12994 -17.46153 -17.02726 -16.76313 -16.43985 -16.18458 -15.88297 -15.34961 -14.89422 -14.71362 -14.31777 -14.14828 -14.09887 -13.94502 -13.64063 -13.18474 -13.06275 -12.87192 -12.80453 -12.58704 -12.44475 -12.09639 -11.84605 -11.83405 -11.59287 -11.41717 -11.07863 -11.07419 -10.91824 -10.49193 -10.35778 -10.06334 -9.93141 -9.80883 -9.61030 -8.73458 -8.39623 -7.96294 -7.85650 -7.49597 -6.34519 -4.43043 0.58699 1.46956 1.86014 2.23125 2.65642 2.97785 3.15420 3.23945 3.26501 3.30744 3.59901 3.73691 3.75677 4.23957 4.41750 4.46976 4.65168 4.83923 4.96731 4.98977 5.12524 5.23664 5.26363 5.31272 5.39353 5.47823 5.52704 5.62369 5.72253 5.85916 5.99480 6.11052 6.11492 6.17923 6.26354 6.34368 6.44137 6.47525 6.54344 6.63311 6.80547 6.90222 7.00901 7.05722 7.43316 7.50966 7.59132 7.77386 7.81197 8.15805 8.57593 8.68001 9.24921 10.72635 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009117 B = 0.003725 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.522671 B = 7514.003613 C =10076.941649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.290 4.290 4 C 0.301 3.699 5 N -0.623 5.623 6 C 0.591 3.409 7 O -0.516 6.516 8 C 0.027 3.973 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.058 4.058 12 C -0.152 4.152 13 C -0.091 4.091 14 C -0.130 4.130 15 C 0.109 3.891 16 N -0.449 5.449 17 C 0.068 3.932 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.280 5.280 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.161 0.839 33 H 0.420 0.580 34 H 0.157 0.843 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 19.081 3.627 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.322 4.322 4 C 0.079 3.921 5 N -0.269 5.269 6 C 0.378 3.622 7 O -0.392 6.392 8 C -0.083 4.083 9 C -0.162 4.162 10 C -0.120 4.120 11 C -0.077 4.077 12 C -0.172 4.172 13 C -0.111 4.111 14 C -0.151 4.151 15 C 0.000 4.000 16 N -0.130 5.130 17 C -0.072 4.072 18 N -0.129 5.129 19 C 0.138 3.862 20 C -0.580 4.580 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 N -0.105 5.105 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.258 0.742 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.890 18.147 3.629 18.528 hybrid contribution 1.033 0.314 -0.940 1.431 sum 1.922 18.461 2.689 18.755 Atomic orbital electron populations 1.20024 0.87528 1.02499 1.02060 1.22011 0.96555 0.90951 1.01967 1.21243 0.88996 1.00453 1.21494 1.17903 0.87545 0.83342 1.03341 1.42251 1.08841 1.04717 1.71129 1.16851 0.87324 0.80988 0.77007 1.90697 1.26141 1.73579 1.48806 1.19457 0.94047 0.83355 1.11398 1.21123 0.90288 0.99181 1.05581 1.18146 0.93546 0.92353 1.07933 1.20459 0.92480 0.97703 0.97041 1.20627 0.99779 0.92337 1.04416 1.20853 0.92228 0.98851 0.99121 1.20018 0.95224 0.93501 1.06346 1.18370 0.83036 0.95236 1.03397 1.43774 1.05287 1.04364 1.59546 1.22265 0.86422 0.94902 1.03639 1.49535 1.06540 1.01920 1.54929 1.19658 0.77774 0.89739 0.99017 1.21379 1.13368 1.31904 0.91305 0.91613 1.24926 0.95647 0.94845 0.98177 1.69923 1.19145 1.32566 1.31019 0.86313 0.78421 0.78432 0.83653 1.19551 1.20559 1.20532 1.77352 0.86104 1.21777 1.25311 0.91355 0.91129 0.91444 0.82139 0.74248 0.82539 0.85539 0.85924 0.85699 0.86214 0.91064 0.90421 0.87116 0.93756 0.92425 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.83 9.58 -39.77 -0.38 -6.21 16 4 C 0.30 6.29 7.68 -152.77 -1.17 5.12 16 5 N -0.62 -11.10 5.39 -12.44 -0.07 -11.17 16 6 C 0.59 9.78 7.74 -12.71 -0.10 9.68 16 7 O -0.52 -9.12 11.60 5.21 0.06 -9.06 16 8 C 0.03 0.40 6.81 -82.31 -0.56 -0.16 16 9 C -0.14 -1.83 10.29 -39.15 -0.40 -2.23 16 10 C -0.12 -1.50 6.16 -106.93 -0.66 -2.15 16 11 C -0.06 -0.64 10.06 -39.53 -0.40 -1.03 16 12 C -0.15 -1.42 9.97 -39.97 -0.40 -1.82 16 13 C -0.09 -0.81 10.01 -39.53 -0.40 -1.21 16 14 C -0.13 -1.32 10.00 -39.42 -0.39 -1.71 16 15 C 0.11 1.37 6.81 -83.97 -0.57 0.80 16 16 N -0.45 -5.86 3.22 -117.70 -0.38 -6.24 16 17 C 0.07 0.71 10.70 59.85 0.64 1.35 16 18 N -0.34 -7.98 3.62 -61.46 -0.22 -8.20 16 19 C 0.26 6.33 6.02 -5.20 -0.03 6.29 16 20 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 24 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 N -0.28 -6.45 12.56 33.64 0.42 -6.03 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.16 3.08 5.84 -52.49 -0.31 2.78 16 33 H 0.42 6.97 6.78 -40.82 -0.28 6.69 16 34 H 0.16 1.89 7.32 -52.49 -0.38 1.51 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.31 5.89 -51.92 -0.31 1.00 16 42 H 0.04 1.06 7.52 -51.93 -0.39 0.67 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -31.54 375.41 -9.71 -41.25 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.44 Total: 7.99 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -5.46 Total: -6.49 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.49 Total: -54.95 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.06 Total: -9.06 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.54 -9.71 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.977 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds