Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00019 * 2 1 4 4 C 1.39000 * 119.90853 * 0.02562 * 3 2 1 5 5 C 1.37687 * 120.10587 * 180.02562 * 4 3 2 6 6 C 1.39807 * 119.92159 * 359.97438 * 5 4 3 7 7 C 1.47496 * 120.09039 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99777 * 138.70359 * 7 6 5 9 9 N 1.34769 * 120.00223 * 318.70837 * 7 6 5 10 10 C 1.36902 * 120.00269 * 184.56652 * 9 7 6 11 11 H 1.07997 * 120.00403 * 224.31553 * 10 9 7 12 12 C 1.39020 * 119.99830 * 44.31810 * 10 9 7 13 13 N 1.31383 * 120.00056 * 9.52033 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 189.52037 * 12 10 9 15 15 H 1.48500 * 109.46996 * 60.00199 * 14 12 10 16 16 H 1.48507 * 109.46887 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46944 * 299.99804 * 14 12 10 18 18 C 1.46506 * 119.99953 * 4.57027 * 9 7 6 19 19 C 1.52996 * 117.49902 * 185.60438 * 18 9 7 20 20 C 1.52998 * 60.00118 * 252.50915 * 19 18 9 21 21 C 1.39783 * 119.81646 * 359.70605 * 6 5 4 22 22 C 1.37779 * 119.89415 * 0.57095 * 21 6 5 23 23 Br 1.89105 * 119.96126 * 179.72423 * 22 21 6 24 24 H 1.09004 * 109.47160 * 59.99931 * 1 2 3 25 25 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47399 * 300.00423 * 1 2 3 27 27 H 1.08002 * 119.94580 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.03640 * 179.97438 * 5 4 3 29 29 H 0.97005 * 120.00130 * 184.99724 * 13 12 10 30 30 H 1.08997 * 115.54532 * 331.31037 * 18 9 7 31 31 H 1.09001 * 117.49860 * 0.02562 * 19 18 9 32 32 H 1.08999 * 117.49657 * 145.01961 * 19 18 9 33 33 H 1.09000 * 117.49868 * 252.51306 * 20 19 18 34 34 H 1.09002 * 117.51327 * 107.47988 * 20 19 18 35 35 H 1.08002 * 120.05245 * 180.31210 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2863 2.3739 0.0005 5 6 1.9072 3.6029 0.0000 6 6 3.3032 3.6789 -0.0005 7 6 3.9721 4.9935 -0.0017 8 8 4.9535 5.1770 0.6930 9 7 3.4960 5.9912 -0.7724 10 6 4.1696 7.1808 -0.8456 11 1 3.6272 8.1130 -0.7892 12 6 5.5520 7.1888 -0.9926 13 7 6.1919 6.0702 -1.2484 14 14 6.4997 8.7900 -0.8264 15 1 6.2797 9.3571 0.5283 16 1 7.9484 8.5306 -1.0246 17 1 6.0245 9.7550 -1.8502 18 6 2.2573 5.8030 -1.5318 19 6 1.8383 6.9211 -2.4883 20 6 1.0708 6.7037 -1.1827 21 6 4.0632 2.5058 0.0057 22 6 3.4341 1.2800 0.0004 23 35 4.4604 -0.3083 0.0009 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2079 2.3147 0.0014 28 1 1.3164 4.5070 0.0000 29 1 7.1615 6.0622 -1.2792 30 1 2.0401 4.7773 -1.8299 31 1 2.4844 7.7966 -2.5530 32 1 1.3452 6.6311 -3.4162 33 1 0.0729 6.2707 -1.2517 34 1 1.2117 7.4361 -0.3879 35 1 5.1418 2.5601 0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 9.022436 kcal Electronic energy + Delta-G solvation = -21521.359157 eV Core-core repulsion = 18147.163152 eV Total energy + Delta-G solvation = -3374.196005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 4.69 seconds Orbital eigenvalues (eV) -40.17360 -38.82018 -36.90456 -35.97432 -32.86475 -32.27452 -30.97775 -29.94941 -29.09889 -27.45644 -25.09255 -22.91298 -22.22936 -21.74820 -20.99043 -19.61085 -18.07219 -16.99628 -16.23704 -16.11633 -15.82390 -14.79651 -14.65983 -14.39274 -13.95419 -13.67995 -13.43019 -13.31957 -13.00344 -12.61999 -12.45408 -11.97571 -11.58513 -11.22100 -11.09402 -10.97492 -10.94811 -10.81630 -10.72095 -10.44450 -10.22053 -10.01644 -9.95669 -9.77147 -8.80112 -8.63261 -8.21291 -7.85759 -7.10582 -6.11638 -3.96364 1.30096 1.44852 1.89161 3.19516 3.28269 3.35004 3.36043 3.63298 4.16996 4.30827 4.71668 4.79219 4.86072 4.94945 5.04305 5.14687 5.24257 5.34820 5.44860 5.50632 5.56736 5.68205 5.75098 5.89386 6.01663 6.12975 6.19481 6.33633 6.45903 6.66620 6.73643 6.83873 6.88037 7.29975 7.55169 8.20549 8.99000 9.09101 9.56100 10.21580 10.93415 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.004375 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.526636 B = 6398.391527 C = 7855.608101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.150 3.850 4 C -0.213 4.213 5 C -0.050 4.050 6 C -0.122 4.122 7 C 0.521 3.479 8 O -0.521 6.521 9 N -0.418 5.418 10 C -0.338 4.338 11 H 0.080 0.920 12 C 0.063 3.937 13 N -0.830 5.830 14 Si 0.915 3.085 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.068 3.932 19 C -0.175 4.175 20 C -0.210 4.210 21 C -0.008 4.008 22 C -0.129 4.129 23 Br -0.048 7.048 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.267 0.733 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 -11.406 -0.082 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.102 3.898 4 C -0.232 4.232 5 C -0.069 4.069 6 C -0.127 4.127 7 C 0.309 3.691 8 O -0.398 6.398 9 N -0.138 5.138 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.148 4.148 13 N -0.463 5.463 14 Si 0.742 3.258 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.202 1.202 18 C -0.038 4.038 19 C -0.212 4.212 20 C -0.249 4.249 21 C -0.028 4.028 22 C -0.209 4.209 23 Br 0.037 6.963 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.352 -12.172 0.187 15.980 hybrid contribution -0.053 1.170 -0.068 1.174 sum -10.405 -11.002 0.120 15.143 Atomic orbital electron populations 1.23076 0.78438 1.03853 1.01508 1.86114 1.21235 1.26301 1.88217 1.18687 0.90568 0.84798 0.95715 1.21075 0.99801 0.91598 1.10744 1.21593 0.94061 0.97613 0.93677 1.20510 0.93311 0.95577 1.03295 1.17504 0.85859 0.83186 0.82580 1.90636 1.25932 1.81556 1.41689 1.42603 1.20006 1.13343 1.37832 1.18871 0.89926 0.83939 1.53723 0.90240 1.25303 0.97573 0.97354 0.94520 1.69811 1.08736 1.26839 1.40922 0.86230 0.78697 0.82205 0.78703 1.19983 1.21040 1.20181 1.21969 0.88046 0.94864 0.98946 1.23112 1.02983 1.02482 0.92648 1.23375 0.95940 1.05361 1.00243 1.21105 1.01039 0.88564 0.92136 1.20851 0.90863 0.92780 1.16432 1.96608 1.70248 1.31454 1.98005 0.92506 0.88284 0.92523 0.84790 0.84030 0.92278 0.87333 0.87409 0.89723 0.89655 0.88863 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.06 9.81 -18.90 -0.19 -4.25 16 3 C 0.15 2.29 6.69 -38.99 -0.26 2.03 16 4 C -0.21 -2.98 9.01 -39.50 -0.36 -3.33 16 5 C -0.05 -0.84 7.46 -39.20 -0.29 -1.13 16 6 C -0.12 -2.53 5.28 -104.96 -0.55 -3.08 16 7 C 0.52 13.30 6.44 -12.49 -0.08 13.22 16 8 O -0.52 -15.44 14.63 5.25 0.08 -15.36 16 9 N -0.42 -10.26 2.85 -108.91 -0.31 -10.57 16 10 C -0.34 -8.98 7.85 -15.00 -0.12 -9.09 16 11 H 0.08 2.02 7.32 -52.49 -0.38 1.64 16 12 C 0.06 1.74 4.67 -17.45 -0.08 1.66 16 13 N -0.83 -24.23 11.25 55.50 0.62 -23.61 16 14 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.07 1.31 4.39 -67.93 -0.30 1.01 16 19 C -0.17 -3.02 9.80 -26.73 -0.26 -3.28 16 20 C -0.21 -3.36 9.53 -26.73 -0.25 -3.61 16 21 C -0.01 -0.15 9.37 -39.17 -0.37 -0.52 16 22 C -0.13 -2.23 6.23 -39.44 -0.25 -2.47 16 23 Br -0.05 -0.74 33.14 -68.01 -2.25 -3.00 16 24 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 27 H 0.13 1.40 6.28 -52.49 -0.33 1.07 16 28 H 0.14 2.19 5.54 -52.49 -0.29 1.90 16 29 H 0.27 7.53 8.32 -40.82 -0.34 7.19 16 30 H 0.11 1.96 5.87 -51.93 -0.30 1.65 16 31 H 0.11 2.07 6.79 -51.93 -0.35 1.72 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.15 3.06 8.06 -52.49 -0.42 2.64 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -32.22 315.15 -8.21 -40.43 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.71 Total: 2.65 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.18 Total: -7.39 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.31 Total: -34.18 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.11 Total: -19.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.25 Total: -3.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.22 -8.21 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.453 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.69 seconds