Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00019 * 2 1 4 4 C 1.39000 * 119.90853 * 0.02562 * 3 2 1 5 5 C 1.37687 * 120.10587 * 180.02562 * 4 3 2 6 6 C 1.39807 * 119.92159 * 359.97438 * 5 4 3 7 7 C 1.47496 * 120.09039 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99777 * 138.70359 * 7 6 5 9 9 N 1.34769 * 120.00223 * 318.70837 * 7 6 5 10 10 C 1.36902 * 120.00269 * 184.56652 * 9 7 6 11 11 H 1.07997 * 120.00403 * 224.31553 * 10 9 7 12 12 C 1.39020 * 119.99830 * 44.31810 * 10 9 7 13 13 N 1.31383 * 120.00056 * 9.52033 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 189.52037 * 12 10 9 15 15 H 1.48500 * 109.46996 * 60.00199 * 14 12 10 16 16 H 1.48507 * 109.46887 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46944 * 299.99804 * 14 12 10 18 18 C 1.46506 * 119.99953 * 4.57027 * 9 7 6 19 19 C 1.52996 * 117.49902 * 185.60438 * 18 9 7 20 20 C 1.52998 * 60.00118 * 252.50915 * 19 18 9 21 21 C 1.39783 * 119.81646 * 359.70605 * 6 5 4 22 22 C 1.37779 * 119.89415 * 0.57095 * 21 6 5 23 23 Br 1.89105 * 119.96126 * 179.72423 * 22 21 6 24 24 H 1.09004 * 109.47160 * 59.99931 * 1 2 3 25 25 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47399 * 300.00423 * 1 2 3 27 27 H 1.08002 * 119.94580 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.03640 * 179.97438 * 5 4 3 29 29 H 0.97005 * 120.00130 * 184.99724 * 13 12 10 30 30 H 1.08997 * 115.54532 * 331.31037 * 18 9 7 31 31 H 1.09001 * 117.49860 * 0.02562 * 19 18 9 32 32 H 1.08999 * 117.49657 * 145.01961 * 19 18 9 33 33 H 1.09000 * 117.49868 * 252.51306 * 20 19 18 34 34 H 1.09002 * 117.51327 * 107.47988 * 20 19 18 35 35 H 1.08002 * 120.05245 * 180.31210 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2863 2.3739 0.0005 5 6 1.9072 3.6029 0.0000 6 6 3.3032 3.6789 -0.0005 7 6 3.9721 4.9935 -0.0017 8 8 4.9535 5.1770 0.6930 9 7 3.4960 5.9912 -0.7724 10 6 4.1696 7.1808 -0.8456 11 1 3.6272 8.1130 -0.7892 12 6 5.5520 7.1888 -0.9926 13 7 6.1919 6.0702 -1.2484 14 14 6.4997 8.7900 -0.8264 15 1 6.2797 9.3571 0.5283 16 1 7.9484 8.5306 -1.0246 17 1 6.0245 9.7550 -1.8502 18 6 2.2573 5.8030 -1.5318 19 6 1.8383 6.9211 -2.4883 20 6 1.0708 6.7037 -1.1827 21 6 4.0632 2.5058 0.0057 22 6 3.4341 1.2800 0.0004 23 35 4.4604 -0.3083 0.0009 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2079 2.3147 0.0014 28 1 1.3164 4.5070 0.0000 29 1 7.1615 6.0622 -1.2792 30 1 2.0401 4.7773 -1.8299 31 1 2.4844 7.7966 -2.5530 32 1 1.3452 6.6311 -3.4162 33 1 0.0729 6.2707 -1.2517 34 1 1.2117 7.4361 -0.3879 35 1 5.1418 2.5601 0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = -11.214058 kcal Electronic energy + Delta-G solvation = -21522.236677 eV Core-core repulsion = 18147.163152 eV Total energy + Delta-G solvation = -3375.073525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 7.54 seconds Orbital eigenvalues (eV) -41.46327 -40.33161 -38.21922 -37.64709 -34.78309 -33.60550 -32.77240 -31.33384 -30.35560 -28.42196 -26.89554 -24.39509 -23.54052 -23.06720 -22.50269 -21.32399 -19.23028 -18.64823 -17.91427 -17.42519 -16.75072 -16.63107 -16.22515 -15.73261 -15.58879 -15.05108 -14.90893 -14.73708 -14.35190 -13.99759 -13.86734 -13.43632 -12.92798 -12.87276 -12.78738 -12.72583 -12.22011 -12.13693 -12.02284 -11.99557 -11.79299 -11.54466 -11.25244 -11.19379 -10.75642 -10.08015 -9.92712 -9.19744 -9.00827 -8.15668 -6.04419 -0.01872 0.10637 0.60500 1.38083 1.44852 1.49582 2.15573 2.21597 2.32834 2.70463 3.05778 3.13432 3.41830 3.73456 3.80369 3.98395 4.12481 4.17044 4.28721 4.40604 4.43854 4.48203 4.49529 4.67743 4.81806 4.85804 4.91152 5.04320 5.11731 5.29282 5.37647 5.45590 5.49191 5.51971 6.18091 6.26569 7.00418 7.18194 7.63219 8.31888 8.88006 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.004375 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.526636 B = 6398.391527 C = 7855.608101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.166 3.834 4 C -0.192 4.192 5 C -0.037 4.037 6 C -0.155 4.155 7 C 0.509 3.491 8 O -0.584 6.584 9 N -0.433 5.433 10 C -0.345 4.345 11 H 0.085 0.915 12 C 0.008 3.992 13 N -0.871 5.871 14 Si 0.974 3.026 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.254 1.254 18 C 0.035 3.965 19 C -0.174 4.174 20 C -0.175 4.175 21 C -0.023 4.023 22 C -0.143 4.143 23 Br -0.038 7.038 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.259 0.741 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 -12.155 -0.679 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.228 6.228 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.056 4.056 6 C -0.159 4.159 7 C 0.299 3.701 8 O -0.466 6.466 9 N -0.151 5.151 10 C -0.473 4.473 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.507 5.507 14 Si 0.799 3.201 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.178 1.178 18 C -0.069 4.069 19 C -0.211 4.211 20 C -0.214 4.214 21 C -0.044 4.044 22 C -0.223 4.223 23 Br 0.047 6.953 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.091 0.909 27 H 0.202 0.798 28 H 0.175 0.825 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.683 -12.912 -0.445 19.558 hybrid contribution 1.074 1.252 0.131 1.654 sum -13.610 -11.660 -0.314 17.924 Atomic orbital electron populations 1.23540 0.75422 1.06184 1.03135 1.86133 1.24238 1.25043 1.87337 1.18772 0.89856 0.86229 0.93414 1.21483 1.01962 0.89624 1.08006 1.21673 0.91935 0.99482 0.92541 1.20151 0.95266 0.93123 1.07373 1.18292 0.85270 0.84997 0.81569 1.90566 1.28766 1.83062 1.44213 1.42803 1.21518 1.12655 1.38170 1.19167 0.90350 0.85204 1.52593 0.89731 1.26197 0.98845 1.00206 0.94540 1.69961 1.08159 1.29040 1.43493 0.85308 0.77047 0.78946 0.78811 1.20345 1.21546 1.17802 1.22216 0.87253 0.96611 1.00844 1.23184 1.02889 1.00392 0.94678 1.23423 0.96562 1.02881 0.98507 1.20807 0.99639 0.89910 0.94088 1.20874 0.92327 0.92177 1.16944 1.96592 1.70556 1.30131 1.97998 0.90701 0.85934 0.90857 0.79806 0.82506 0.93222 0.85816 0.90010 0.86423 0.84864 0.90318 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.31 -7.13 9.81 -90.56 -0.89 -8.02 16 3 C 0.17 4.58 6.69 22.65 0.15 4.73 16 4 C -0.19 -4.53 9.01 22.32 0.20 -4.33 16 5 C -0.04 -1.16 7.46 22.52 0.17 -0.99 16 6 C -0.15 -6.55 5.28 -20.08 -0.11 -6.66 16 7 C 0.51 27.29 6.44 86.69 0.56 27.85 16 8 O -0.58 -37.19 14.63 -4.12 -0.06 -37.25 16 9 N -0.43 -21.78 2.85 -616.74 -1.76 -23.54 16 10 C -0.35 -18.96 7.85 84.09 0.66 -18.30 16 11 H 0.09 4.40 7.32 -2.91 -0.02 4.37 16 12 C 0.01 0.45 4.67 84.95 0.40 0.84 16 13 N -0.87 -54.09 11.25 21.68 0.24 -53.84 16 14 Si 0.97 45.56 29.57 68.60 2.03 47.59 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 18 C 0.04 1.32 4.39 44.99 0.20 1.52 16 19 C -0.17 -5.62 9.80 30.59 0.30 -5.32 16 20 C -0.18 -4.98 9.53 30.59 0.29 -4.69 16 21 C -0.02 -0.97 9.37 22.53 0.21 -0.76 16 22 C -0.14 -4.88 6.23 22.36 0.14 -4.74 16 23 Br -0.04 -1.16 33.14 -20.37 -0.68 -1.83 16 24 H 0.07 0.65 7.65 -2.38 -0.02 0.63 16 25 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 27 H 0.18 2.52 6.28 -2.91 -0.02 2.50 16 28 H 0.16 4.30 5.54 -2.91 -0.02 4.28 16 29 H 0.26 15.64 8.32 -92.70 -0.77 14.87 16 30 H 0.12 4.18 5.87 -2.39 -0.01 4.17 16 31 H 0.08 3.09 6.79 -2.39 -0.02 3.07 16 32 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -77.40 315.15 4.30 -73.10 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.13 Total: 13.40 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.28 Total: -9.61 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.52 Total: -77.38 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.95 Total: -45.27 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.68 Total: -1.83 kcal Total: -77.40 4.30 -73.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.887 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.54 seconds