Wall clock time and date at job start Tue Mar 31 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47115 * 2 1 4 4 C 1.35822 * 117.00377 * 179.97438 * 3 2 1 5 5 C 1.38946 * 119.92701 * 270.02064 * 4 3 2 6 6 Cl 1.73599 * 119.93534 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.13135 * 179.74138 * 5 4 3 8 8 C 1.39776 * 119.98146 * 0.50996 * 7 5 4 9 9 C 1.47499 * 120.07155 * 179.74224 * 8 7 5 10 10 O 1.21617 * 119.99982 * 149.25155 * 9 8 7 11 11 N 1.34778 * 119.99712 * 329.25240 * 9 8 7 12 12 C 1.36902 * 120.00518 * 5.71764 * 11 9 8 13 13 H 1.08001 * 119.99445 * 308.52206 * 12 11 9 14 14 C 1.39016 * 119.99979 * 128.23874 * 12 11 9 15 15 N 1.31380 * 120.00245 * 353.22254 * 14 12 11 16 16 Si 1.86806 * 119.99780 * 173.22277 * 14 12 11 17 17 H 1.48500 * 109.46869 * 89.99838 * 16 14 12 18 18 H 1.48493 * 109.47101 * 209.99807 * 16 14 12 19 19 H 1.48495 * 109.46845 * 330.00126 * 16 14 12 20 20 C 1.46501 * 119.99750 * 185.71497 * 11 9 8 21 21 C 1.52995 * 117.50107 * 181.19743 * 20 11 9 22 22 C 1.53000 * 117.49777 * 112.57324 * 20 11 9 23 23 C 1.39776 * 119.85481 * 359.46927 * 8 7 5 24 24 C 1.38154 * 119.86672 * 0.27683 * 23 8 7 25 25 O 1.36006 * 119.99049 * 180.02562 * 24 23 8 26 26 C 1.42902 * 117.00122 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47219 * 60.00338 * 1 2 3 28 28 H 1.09000 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47159 * 299.99845 * 1 2 3 30 30 H 1.08989 * 109.47527 * 239.99774 * 2 1 3 31 31 H 1.09000 * 109.47219 * 119.99662 * 2 1 3 32 32 H 1.08000 * 120.00857 * 180.28410 * 7 5 4 33 33 H 0.97004 * 119.99798 * 185.00864 * 15 14 12 34 34 H 1.09004 * 115.55151 * 326.90469 * 20 11 9 35 35 H 1.09003 * 117.49967 * 359.97438 * 21 20 11 36 36 H 1.08998 * 117.50266 * 145.02036 * 21 20 11 37 37 H 1.09003 * 117.49690 * 214.97686 * 22 20 11 38 38 H 1.08993 * 117.49816 * 359.97438 * 22 20 11 39 39 H 1.08003 * 120.06890 * 180.29283 * 23 8 7 40 40 H 1.08995 * 109.46881 * 300.00465 * 26 25 24 41 41 H 1.09004 * 109.47037 * 59.99835 * 26 25 24 42 42 H 1.08994 * 109.46767 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3529 1.5253 0.0005 5 6 4.0396 1.6160 1.2050 6 17 3.1749 1.5020 2.7060 7 6 5.4072 1.7914 1.2105 8 6 6.1037 1.8890 0.0026 9 6 7.5660 2.0824 0.0061 10 8 8.2410 1.6326 -0.9000 11 7 8.1540 2.7575 1.0136 12 6 7.4126 3.1620 2.0911 13 1 6.4980 3.7162 1.9397 14 6 7.8338 2.8543 3.3796 15 7 8.8676 2.0642 3.5618 16 14 6.9300 3.5643 4.8523 17 1 5.8389 2.6412 5.2555 18 1 7.8791 3.7321 5.9818 19 1 6.3533 4.8839 4.4900 20 6 9.5866 3.0583 0.9558 21 6 10.2006 3.8028 2.1430 22 6 9.9949 4.5256 0.8103 23 6 5.4123 1.7973 -1.2087 24 6 4.0427 1.6163 -1.2071 25 8 3.3674 1.5262 -2.3842 26 6 4.1378 1.6277 -3.5835 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.9396 1.8569 2.1478 33 1 9.1172 1.7911 4.4585 34 1 10.2039 2.3121 0.4555 35 1 9.5386 4.0691 2.9670 36 1 11.2220 3.5464 2.4241 37 1 10.8811 4.7447 0.2146 38 1 9.1977 5.2670 0.7572 39 1 5.9477 1.8675 -2.1441 40 1 4.6442 2.5925 -3.6094 41 1 4.8782 0.8281 -3.6086 42 1 3.4788 1.5395 -4.4472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058283002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:35 Heat of formation + Delta-G solvation = -41.208471 kcal Electronic energy + Delta-G solvation = -28026.318570 eV Core-core repulsion = 24000.205170 eV Total energy + Delta-G solvation = -4026.113400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.37216 -38.95936 -38.10214 -36.80376 -36.23433 -35.57070 -33.29814 -31.82503 -31.49096 -29.77331 -29.22344 -27.13950 -25.36902 -23.73757 -22.62380 -22.02250 -21.32648 -20.88850 -19.58376 -18.34257 -17.47763 -16.93446 -16.57365 -15.77346 -15.60611 -15.20030 -14.92888 -14.78879 -14.64562 -14.33692 -13.95488 -13.86154 -13.56565 -13.02900 -12.81827 -12.51323 -12.35418 -12.18521 -12.05608 -11.70853 -11.65371 -11.48617 -11.41434 -11.21071 -11.03410 -10.97541 -10.67288 -10.47395 -10.44815 -10.40864 -9.77099 -9.66988 -9.33610 -8.96695 -8.60931 -8.32566 -7.83985 -7.37689 -6.51174 -4.36005 1.09634 1.62669 2.35018 3.03865 3.13576 3.15921 3.33314 3.45606 3.83932 3.94016 4.21907 4.47673 4.73274 5.05000 5.11684 5.14509 5.18173 5.24800 5.26568 5.41751 5.47742 5.53149 5.54364 5.66027 5.75610 5.85214 5.92427 5.98737 6.07411 6.12938 6.14735 6.38821 6.47838 6.51702 6.73169 6.85273 7.00735 7.02906 7.23805 7.28494 7.36053 7.77047 7.89398 8.17698 8.83450 9.24696 9.70703 10.48524 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.004902 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.464258 B = 5710.874262 C = 7611.524574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.316 6.316 4 C 0.076 3.924 5 C -0.038 4.038 6 Cl -0.060 7.060 7 C -0.085 4.085 8 C -0.049 4.049 9 C 0.523 3.477 10 O -0.593 6.593 11 N -0.402 5.402 12 C -0.356 4.356 13 H 0.092 0.908 14 C 0.056 3.944 15 N -0.840 5.840 16 Si 0.897 3.103 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.263 1.263 20 C 0.107 3.893 21 C -0.132 4.132 22 C -0.222 4.222 23 C -0.152 4.152 24 C 0.100 3.900 25 O -0.308 6.308 26 C 0.025 3.975 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.188 0.812 33 H 0.273 0.727 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -1.574 -4.799 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.233 6.233 4 C 0.030 3.970 5 C -0.065 4.065 6 Cl -0.031 7.031 7 C -0.104 4.104 8 C -0.053 4.053 9 C 0.313 3.687 10 O -0.478 6.478 11 N -0.118 5.118 12 C -0.484 4.484 13 H 0.109 0.891 14 C -0.153 4.153 15 N -0.473 5.473 16 Si 0.721 3.279 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.187 1.187 20 C 0.002 3.998 21 C -0.169 4.169 22 C -0.261 4.261 23 C -0.172 4.172 24 C 0.055 3.945 25 O -0.221 6.221 26 C -0.070 4.070 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.205 0.795 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.159 0.841 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.594 -1.734 -4.947 10.933 hybrid contribution -0.065 0.191 0.859 0.882 sum -9.659 -1.544 -4.088 10.601 Atomic orbital electron populations 1.21714 0.93410 1.02108 1.03163 1.22690 0.95304 0.82787 1.00595 1.86041 1.16581 1.26662 1.94041 1.17618 0.83669 1.07102 0.88574 1.20999 0.92866 1.06739 0.85910 1.98341 1.76998 1.96558 1.31160 1.22514 0.90551 0.95115 1.02231 1.19778 0.94671 0.98949 0.91890 1.18060 0.86407 0.80077 0.84198 1.90640 1.64879 1.52906 1.39419 1.42632 1.05946 1.46404 1.16787 1.19367 1.07964 1.37106 0.83969 0.89097 1.25502 0.95627 0.95165 0.99029 1.69994 1.23956 1.29850 1.23469 0.86365 0.79869 0.80547 0.81119 1.19048 1.20276 1.18722 1.21148 0.84167 0.91905 1.02590 1.23014 1.00207 1.01521 0.92189 1.23405 1.02310 0.97338 1.03012 1.21291 0.91834 1.04537 0.99549 1.18851 0.90123 1.00211 0.85361 1.86103 1.35826 1.88221 1.11979 1.23082 0.97160 1.01760 0.85042 0.91774 0.91041 0.91765 0.93014 0.92981 0.79512 0.91596 0.87782 0.86943 0.90699 0.90387 0.89610 0.84102 0.92489 0.92453 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.81 6.78 37.16 0.25 1.06 16 3 O -0.32 -5.24 9.27 -33.86 -0.31 -5.55 16 4 C 0.08 1.36 5.74 -38.90 -0.22 1.14 16 5 C -0.04 -0.71 6.32 -39.45 -0.25 -0.95 16 6 Cl -0.06 -1.02 28.48 -51.86 -1.48 -2.50 16 7 C -0.09 -1.75 7.70 -39.14 -0.30 -2.05 16 8 C -0.05 -1.05 5.61 -104.97 -0.59 -1.64 16 9 C 0.52 12.67 7.41 -12.49 -0.09 12.57 16 10 O -0.59 -15.41 16.50 5.26 0.09 -15.32 16 11 N -0.40 -9.71 2.75 -108.91 -0.30 -10.01 16 12 C -0.36 -8.37 5.30 -15.00 -0.08 -8.45 16 13 H 0.09 2.13 6.71 -52.49 -0.35 1.77 16 14 C 0.06 1.29 3.04 -17.46 -0.05 1.24 16 15 N -0.84 -20.38 10.82 55.50 0.60 -19.78 16 16 Si 0.90 18.22 29.56 -169.99 -5.03 13.20 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C 0.11 2.46 5.55 -67.93 -0.38 2.08 16 21 C -0.13 -2.79 8.07 -26.73 -0.22 -3.00 16 22 C -0.22 -4.42 10.38 -26.73 -0.28 -4.70 16 23 C -0.15 -2.83 8.58 -39.04 -0.33 -3.17 16 24 C 0.10 1.75 6.69 -39.19 -0.26 1.49 16 25 O -0.31 -4.76 10.27 -34.44 -0.35 -5.11 16 26 C 0.02 0.28 9.81 101.05 0.99 1.27 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.67 8.14 -51.94 -0.42 0.25 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.19 4.13 4.90 -52.49 -0.26 3.87 16 33 H 0.27 6.32 8.32 -40.82 -0.34 5.98 16 34 H 0.10 2.48 7.78 -51.93 -0.40 2.08 16 35 H 0.11 2.56 5.14 -51.93 -0.27 2.30 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.14 2.46 6.15 -52.48 -0.32 2.14 16 40 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 41 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -27.43 363.85 -8.07 -35.50 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.34 Total: 8.33 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.43 Total: -4.24 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.30 Total: -29.79 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.58 Total: -25.99 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.48 Total: -2.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.43 -8.07 -35.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058283002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.709 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds