Wall clock time and date at job start Tue Mar 31 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31359 * 119.64162 * 2 1 4 4 C 1.33762 * 119.75865 * 179.72268 * 3 2 1 5 5 C 1.40716 * 120.86881 * 180.02562 * 4 3 2 6 6 C 1.35723 * 120.08371 * 179.97438 * 5 4 3 7 7 C 1.40617 * 120.84253 * 0.02562 * 6 5 4 8 8 C 1.47866 * 119.75477 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99728 * 309.04819 * 8 7 6 10 10 N 1.34769 * 120.00088 * 129.04104 * 8 7 6 11 11 C 1.46502 * 120.00182 * 3.52084 * 10 8 7 12 12 C 1.50693 * 109.47550 * 93.75815 * 11 10 8 13 13 H 1.08003 * 119.99675 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00515 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99552 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00541 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47298 * 89.99675 * 16 14 12 18 18 H 1.48504 * 109.47192 * 210.00113 * 16 14 12 19 19 H 1.48501 * 109.47057 * 329.99541 * 16 14 12 20 20 C 1.46507 * 119.99914 * 183.51263 * 10 8 7 21 21 C 1.52997 * 109.46776 * 84.88287 * 20 10 8 22 22 C 1.47207 * 109.46692 * 179.97438 * 21 20 10 23 23 N 9.64338 * 161.79877 * 319.89131 * 4 1 2 24 24 C 1.38403 * 120.49417 * 359.97438 * 7 6 5 25 25 C 1.40448 * 119.49697 * 359.97438 * 24 7 6 26 26 N 1.33792 * 120.93617 * 180.02562 * 25 24 7 27 27 C 1.31305 * 119.73486 * 179.97438 * 26 25 24 28 28 C 1.50698 * 119.65883 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47400 * 90.00189 * 1 2 3 30 30 H 1.09001 * 109.47594 * 210.00226 * 1 2 3 31 31 H 1.09001 * 109.47357 * 330.00270 * 1 2 3 32 32 H 1.08001 * 119.95357 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.57494 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.46754 * 213.76200 * 11 10 8 35 35 H 1.09001 * 109.47066 * 333.75570 * 11 10 8 36 36 H 0.96999 * 119.99897 * 180.02562 * 15 14 12 37 37 H 1.09010 * 109.46749 * 204.88027 * 20 10 8 38 38 H 1.08993 * 109.47127 * 324.88181 * 20 10 8 39 39 H 1.08996 * 109.47183 * 299.99307 * 21 20 10 40 40 H 1.08999 * 109.47428 * 60.00487 * 21 20 10 41 41 H 1.08001 * 120.25332 * 179.97438 * 24 7 6 42 42 H 1.08997 * 109.47085 * 269.97529 * 28 27 26 43 43 H 1.09002 * 109.47410 * 29.98155 * 28 27 26 44 44 H 1.09005 * 109.47042 * 149.98088 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1417 0.0000 4 6 3.4943 1.1444 0.0056 5 6 4.2138 2.3537 0.0063 6 6 5.5709 2.3379 0.0126 7 6 6.2777 1.1223 0.0179 8 6 7.7563 1.1331 0.0241 9 8 8.3626 1.7991 -0.7922 10 7 8.4317 0.4047 0.9349 11 6 7.7037 -0.4577 1.8690 12 6 7.6218 -1.8528 1.3051 13 1 8.0671 -2.0747 0.3465 14 6 6.9775 -2.8456 2.0122 15 7 6.4339 -2.5749 3.1789 16 14 6.8765 -4.5750 1.3136 17 1 8.0530 -5.3606 1.7649 18 1 5.6317 -5.2295 1.7902 19 1 6.8645 -4.5096 -0.1699 20 6 9.8940 0.4752 0.9908 21 6 10.3145 1.6709 1.8476 22 6 11.7838 1.7413 1.9042 23 7 12.9171 1.7969 1.9494 24 6 5.5997 -0.0843 0.0174 25 6 4.1952 -0.0884 0.0121 26 7 3.5107 -1.2380 0.0119 27 6 2.1979 -1.2142 0.0074 28 6 1.4287 -2.5101 0.0067 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.6853 3.2956 0.0018 33 1 6.1149 3.2710 0.0134 34 1 8.2276 -0.4822 2.8244 35 1 6.6973 -0.0658 2.0164 36 1 5.9809 -3.2734 3.6767 37 1 10.2854 -0.4424 1.4303 38 1 10.2908 0.5932 -0.0175 39 1 9.9231 2.5884 1.4081 40 1 9.9177 1.5529 2.8559 41 1 6.1464 -1.0157 0.0211 42 1 1.2464 -2.8238 -1.0211 43 1 2.0068 -3.2762 0.5234 44 1 0.4762 -2.3675 0.5174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058328802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:26 Heat of formation + Delta-G solvation = 55.934436 kcal Electronic energy + Delta-G solvation = -28806.071262 eV Core-core repulsion = 24916.614558 eV Total energy + Delta-G solvation = -3889.456705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27254 -39.62204 -37.23685 -36.58833 -35.37204 -34.78503 -33.15826 -32.84591 -31.51823 -30.44722 -28.28658 -28.04139 -27.31676 -24.61152 -23.38436 -23.13334 -22.52162 -22.03194 -19.52875 -18.09550 -17.62995 -17.37937 -16.62412 -16.27785 -16.10625 -15.43908 -15.33968 -14.73859 -14.58164 -14.31320 -14.03037 -13.77528 -13.55553 -13.32044 -13.22493 -13.12583 -12.99097 -12.83169 -12.49341 -12.39501 -12.23934 -12.20428 -11.83073 -11.70615 -11.60068 -11.29318 -11.26599 -11.14913 -11.09059 -11.02586 -10.84141 -10.65714 -10.24160 -9.91083 -9.45445 -8.83697 -8.67317 -8.50257 -8.11088 -8.02592 -6.30372 -4.38530 0.42958 0.71615 2.19943 2.68674 2.82467 2.92339 3.19342 3.27068 3.29857 3.36069 3.57581 4.06942 4.20827 4.24512 4.26417 4.33010 4.44375 4.78942 4.90952 5.01927 5.05145 5.22035 5.27588 5.28149 5.32964 5.35940 5.43958 5.57005 5.62699 5.66757 5.69346 5.82001 5.89594 5.99893 6.10480 6.18665 6.24205 6.33807 6.48539 6.51158 6.73928 6.97441 7.03833 7.29097 7.52946 7.62067 7.67867 7.88515 8.00269 8.03930 8.58610 8.74086 9.29559 10.75615 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.004280 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.853649 B = 6540.411703 C = 8686.300603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 N -0.435 5.435 4 C 0.090 3.910 5 C -0.108 4.108 6 C -0.053 4.053 7 C -0.118 4.118 8 C 0.563 3.437 9 O -0.558 6.558 10 N -0.587 5.587 11 C 0.229 3.771 12 C -0.551 4.551 13 H 0.065 0.935 14 C 0.078 3.922 15 N -0.878 5.878 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.127 3.873 21 C -0.046 4.046 22 C 0.221 3.779 23 N -0.449 5.449 24 C -0.015 4.015 25 C 0.075 3.925 26 N -0.399 5.399 27 C 0.092 3.908 28 C -0.104 4.104 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.186 0.814 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 4.514 -3.193 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 N -0.150 5.150 4 C -0.034 4.034 5 C -0.128 4.128 6 C -0.073 4.073 7 C -0.123 4.123 8 C 0.351 3.649 9 O -0.438 6.438 10 N -0.316 5.316 11 C 0.110 3.890 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.128 4.128 15 N -0.514 5.514 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.194 1.194 20 C 0.002 3.998 21 C -0.087 4.087 22 C -0.097 4.097 23 N -0.127 5.127 24 C -0.034 4.034 25 C -0.049 4.049 26 N -0.113 5.113 27 C -0.065 4.065 28 C -0.162 4.162 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.202 0.798 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.787 4.958 -3.353 10.632 hybrid contribution -0.588 -1.070 -0.073 1.223 sum -9.375 3.888 -3.425 10.712 Atomic orbital electron populations 1.20799 0.87917 1.03973 1.03404 1.22348 0.98126 0.89123 0.95357 1.68478 1.07527 1.28570 1.10456 1.19633 0.89935 0.94465 0.99373 1.20453 0.93231 0.96284 1.02787 1.20813 0.93509 0.97411 0.95583 1.19836 0.93877 0.93674 1.04882 1.18202 0.86730 0.79209 0.80804 1.90725 1.69736 1.44249 1.39129 1.48164 1.05758 1.43072 1.34606 1.19697 0.92757 0.88528 0.88033 1.21382 1.37621 0.93883 1.05985 0.91650 1.24876 0.94369 0.99023 0.94519 1.69906 1.34899 1.33988 1.12637 0.86550 0.77632 0.83973 0.79803 1.20585 1.20879 1.19440 1.21147 0.81450 0.96853 1.00379 1.19776 0.81715 1.02868 1.04386 1.29058 0.95087 0.92836 0.92675 1.81167 1.13029 1.09086 1.09379 1.22449 0.91191 1.00859 0.88923 1.19504 0.95234 0.88795 1.01336 1.68568 1.07210 1.28563 1.06978 1.22329 0.90778 0.96403 0.96959 1.20797 0.99136 0.92908 1.03362 0.89958 0.89808 0.90231 0.84476 0.84625 0.94181 0.93703 0.92345 0.88779 0.89962 0.87240 0.86987 0.79773 0.90042 0.89876 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.77 36.00 0.35 -0.56 16 2 C 0.11 1.49 6.79 -82.25 -0.56 0.93 16 3 N -0.44 -6.99 10.37 -7.00 -0.07 -7.06 16 4 C 0.09 1.56 6.59 -84.72 -0.56 1.00 16 5 C -0.11 -1.63 9.95 -39.55 -0.39 -2.02 16 6 C -0.05 -0.81 9.62 -39.58 -0.38 -1.19 16 7 C -0.12 -2.13 4.81 -105.00 -0.51 -2.64 16 8 C 0.56 10.49 7.16 -12.32 -0.09 10.40 16 9 O -0.56 -11.14 16.68 5.32 0.09 -11.06 16 10 N -0.59 -10.57 2.47 -176.17 -0.43 -11.00 16 11 C 0.23 4.78 4.65 -5.20 -0.02 4.76 16 12 C -0.55 -12.83 6.63 -34.45 -0.23 -13.05 16 13 H 0.07 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.08 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.88 -22.55 13.29 55.43 0.74 -21.82 16 16 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.13 1.93 5.36 -4.04 -0.02 1.91 16 21 C -0.05 -0.57 5.99 -29.52 -0.18 -0.75 16 22 C 0.22 3.09 15.43 -20.77 -0.32 2.77 16 23 N -0.45 -7.34 18.53 42.14 0.78 -6.56 16 24 C -0.02 -0.30 7.60 -38.69 -0.29 -0.59 16 25 C 0.08 1.45 6.59 -84.81 -0.56 0.89 16 26 N -0.40 -7.59 10.37 -7.07 -0.07 -7.66 16 27 C 0.09 1.40 6.79 -82.27 -0.56 0.84 16 28 C -0.10 -1.13 9.77 36.00 0.35 -0.78 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.56 5.91 -51.93 -0.31 0.25 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.05 1.01 5.76 -51.93 -0.30 0.71 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.09 1.42 8.03 -51.92 -0.42 1.01 16 38 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.19 4.06 4.85 -52.49 -0.25 3.81 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.63 5.91 -51.93 -0.31 0.33 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -30.06 378.71 -7.67 -37.73 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.32 Total: 3.35 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -4.06 Total: 3.71 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.94 Total: -54.10 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.06 -7.67 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.668 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds