Wall clock time and date at job start Tue Mar 31 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47018 * 269.99679 * 3 2 1 5 5 H 1.48494 * 109.47281 * 29.99765 * 3 2 1 6 6 H 1.48495 * 109.46879 * 149.99951 * 3 2 1 7 7 C 1.37879 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46721 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46956 * 184.93122 * 10 9 7 12 12 C 1.35473 * 127.82470 * 264.07225 * 11 10 9 13 13 O 1.21607 * 126.87511 * 0.02562 * 12 11 10 14 14 O 1.34244 * 106.25455 * 179.85648 * 12 11 10 15 15 N 1.21005 * 110.89041 * 0.43202 * 14 12 11 16 16 C 1.29916 * 111.54940 * 359.72943 * 15 14 12 17 17 C 1.48091 * 126.52799 * 179.97438 * 16 15 14 18 18 C 1.39479 * 120.12571 * 352.08341 * 17 16 15 19 19 C 1.37974 * 119.88643 * 180.02562 * 18 17 16 20 20 C 1.38345 * 120.14410 * 359.97438 * 19 18 17 21 21 C 1.38400 * 120.25533 * 0.02562 * 20 19 18 22 22 Br 1.89104 * 119.94051 * 180.02562 * 21 20 19 23 23 C 1.38106 * 120.11769 * 359.72466 * 21 20 19 24 24 H 0.96996 * 120.00368 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46809 * 299.99501 * 9 7 2 26 26 H 1.08993 * 109.47395 * 59.99986 * 9 7 2 27 27 H 1.08999 * 109.47311 * 304.92815 * 10 9 7 28 28 H 1.09000 * 109.47394 * 64.93452 * 10 9 7 29 29 H 1.08003 * 120.05726 * 359.97438 * 18 17 16 30 30 H 1.07997 * 119.92765 * 179.97438 * 19 18 17 31 31 H 1.07997 * 119.86826 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.07898 * 180.29436 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 7 1.5169 -4.9276 -0.1169 12 6 1.1290 -5.7595 0.8794 13 8 1.3159 -5.6075 2.0714 14 8 0.4938 -6.7836 0.2879 15 7 0.4782 -6.6453 -0.9141 16 6 1.0732 -5.5485 -1.2760 17 6 1.2456 -5.0551 -2.6616 18 6 0.8933 -5.8642 -3.7417 19 6 1.0565 -5.3997 -5.0306 20 6 1.5680 -4.1337 -5.2533 21 6 1.9195 -3.3259 -4.1859 22 35 2.6172 -1.5967 -4.5006 23 6 1.7558 -3.7781 -2.8913 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 0.8903 26 1 0.6248 -2.5572 -0.8896 27 1 2.9294 -3.5562 -0.8402 28 1 2.8117 -3.6549 0.9331 29 1 0.4942 -6.8529 -3.5695 30 1 0.7843 -6.0257 -5.8675 31 1 1.6935 -3.7745 -6.2640 32 1 2.0259 -3.1454 -2.0587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058329645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:10 Heat of formation + Delta-G solvation = 49.847137 kcal Electronic energy + Delta-G solvation = -21002.175362 eV Core-core repulsion = 17591.635216 eV Total energy + Delta-G solvation = -3410.540145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.00656 -39.51313 -38.23095 -36.66523 -33.80474 -32.76434 -31.83324 -31.16544 -29.93636 -29.09948 -26.19105 -24.60983 -23.29366 -22.67580 -21.27658 -21.09743 -18.18411 -17.89350 -17.13466 -16.57645 -16.22203 -15.87324 -15.09394 -14.96749 -14.67770 -14.10467 -13.77502 -13.66610 -13.59122 -13.01834 -12.77237 -12.58702 -12.15097 -11.64401 -11.39497 -11.22524 -11.08797 -10.91983 -10.65272 -10.54191 -10.18140 -10.11142 -10.03097 -9.47841 -9.19359 -8.80791 -8.55306 -8.41366 -6.19955 -4.26544 0.51501 1.04185 1.67193 2.06174 2.08487 2.46681 3.22236 3.29690 3.31691 3.42748 3.51643 4.05679 4.30647 4.57844 4.72676 4.90058 4.96630 5.02820 5.17538 5.22711 5.43179 5.66806 5.79510 5.99286 6.02465 6.09339 6.15308 6.22172 6.28606 6.54943 7.27355 7.37355 7.67639 7.75720 8.04479 8.32185 8.77585 9.40194 10.90983 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.008794 B = 0.007173 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.227865 B = 3902.436791 C = 6699.870937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.005 3.995 10 C 0.120 3.880 11 N -0.538 5.538 12 C 0.558 3.442 13 O -0.481 6.481 14 O -0.008 6.008 15 N -0.343 5.343 16 C 0.279 3.721 17 C -0.027 4.027 18 C -0.062 4.062 19 C -0.120 4.120 20 C -0.073 4.073 21 C -0.088 4.088 22 Br -0.032 7.032 23 C -0.068 4.068 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -8.119 -13.921 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.033 4.033 10 C 0.003 3.997 11 N -0.274 5.274 12 C 0.310 3.690 13 O -0.361 6.361 14 O -0.051 6.051 15 N -0.078 5.078 16 C 0.012 3.988 17 C -0.030 4.030 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.094 4.094 21 C -0.168 4.168 22 Br 0.054 6.946 23 C -0.089 4.089 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.063 -8.144 -13.590 16.356 hybrid contribution 0.484 1.247 0.479 1.421 sum 4.547 -6.897 -13.111 15.497 Atomic orbital electron populations 1.69952 1.06132 1.27167 1.48908 1.24918 0.94772 0.99274 0.94424 0.86576 0.79956 0.83147 0.78382 1.20297 1.21061 1.19592 1.20852 0.93056 0.89678 1.53254 0.91946 1.19619 0.94238 0.90460 0.98997 1.22646 0.95508 0.77681 1.03818 1.47437 1.51250 1.23080 1.05637 1.20571 0.80926 0.80483 0.87049 1.91146 1.60083 1.74954 1.09937 1.85505 1.64243 1.41721 1.13662 1.74116 1.22429 1.17639 0.93646 1.22543 0.96360 0.90073 0.89838 1.17298 1.04412 0.94833 0.86465 1.21283 0.95986 0.99685 0.91265 1.21057 1.00346 0.95731 0.96755 1.21348 0.96001 0.93539 0.98478 1.21717 1.05727 0.93970 0.95369 1.96814 1.84202 1.17343 1.96253 1.22187 0.94216 0.94561 0.97965 0.92586 0.95220 0.95314 0.89086 0.88440 0.84134 0.84302 0.84547 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 13.29 55.43 0.74 -24.19 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.38 9.11 -34.44 -0.31 -13.70 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.00 0.11 4.47 -27.88 -0.12 -0.02 16 10 C 0.12 2.29 5.26 -4.04 -0.02 2.27 16 11 N -0.54 -9.91 2.86 -119.32 -0.34 -10.25 16 12 C 0.56 10.90 9.34 54.33 0.51 11.40 16 13 O -0.48 -10.60 17.99 -18.89 -0.34 -10.94 16 14 O -0.01 -0.15 11.25 -7.55 -0.08 -0.23 16 15 N -0.34 -5.66 11.74 32.10 0.38 -5.28 16 16 C 0.28 4.62 7.79 -153.60 -1.20 3.43 16 17 C -0.03 -0.40 5.87 -104.95 -0.62 -1.01 16 18 C -0.06 -0.70 9.70 -39.22 -0.38 -1.08 16 19 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 20 C -0.07 -0.78 9.78 -39.48 -0.39 -1.16 16 21 C -0.09 -1.21 6.22 -39.57 -0.25 -1.46 16 22 Br -0.03 -0.46 33.69 -68.01 -2.29 -2.75 16 23 C -0.07 -1.06 8.26 -39.19 -0.32 -1.39 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.71 6.88 -51.93 -0.36 0.35 16 27 H 0.09 1.54 5.91 -51.93 -0.31 1.23 16 28 H 0.10 1.84 8.13 -51.93 -0.42 1.42 16 29 H 0.14 1.39 7.89 -52.48 -0.41 0.97 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.17 3.07 3.05 -52.49 -0.16 2.91 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -29.17 305.13 -8.43 -37.61 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.47 Total: -1.40 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.60 Total: -2.51 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.77 Total: -39.72 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.42 Total: -11.17 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.17 -8.43 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058329645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.454 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds