Wall clock time and date at job start Tue Mar 31 2020 07:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46894 * 271.07712 * 3 2 1 5 5 N 1.46508 * 109.46945 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99541 * 270.00446 * 5 4 3 7 7 C 1.50702 * 109.46685 * 269.99512 * 6 5 4 8 8 H 1.08001 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99971 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00292 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00087 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47493 * 89.99572 * 11 9 7 13 13 H 1.48503 * 109.46903 * 210.00075 * 11 9 7 14 14 H 1.48501 * 109.46789 * 329.99329 * 11 9 7 15 15 C 1.34772 * 120.00246 * 89.99700 * 5 4 3 16 16 O 1.21275 * 120.00143 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99798 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47071 * 179.97438 * 17 15 5 19 19 C 1.34547 * 126.07940 * 125.00197 * 18 17 15 20 20 O 1.34775 * 107.27027 * 180.23217 * 19 18 17 21 21 C 1.34428 * 107.69223 * 359.57168 * 20 19 18 22 22 C 1.47829 * 125.72382 * 180.16177 * 21 20 19 23 23 C 1.39565 * 120.14336 * 180.02562 * 22 21 20 24 24 C 1.37963 * 119.84908 * 179.75023 * 23 22 21 25 25 C 1.38353 * 120.14780 * 0.55089 * 24 23 22 26 26 C 1.38350 * 120.28994 * 359.70440 * 25 24 23 27 27 C 1.37960 * 120.14649 * 0.02562 * 26 25 24 28 28 N 1.31215 * 108.55144 * 0.43585 * 21 20 19 29 29 H 1.08996 * 109.46926 * 151.07759 * 3 2 1 30 30 H 1.09000 * 109.47314 * 31.08142 * 3 2 1 31 31 H 1.08996 * 109.47296 * 60.00273 * 4 3 2 32 32 H 1.09004 * 109.47384 * 299.99822 * 4 3 2 33 33 H 1.08995 * 109.47213 * 29.99383 * 6 5 4 34 34 H 1.08998 * 109.46656 * 150.00196 * 6 5 4 35 35 H 0.96997 * 120.00224 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46969 * 59.99775 * 17 15 5 37 37 H 1.09000 * 109.47462 * 299.99919 * 17 15 5 38 38 H 1.08002 * 126.36062 * 359.96113 * 19 18 17 39 39 H 1.07997 * 120.07336 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.92659 * 180.27744 * 24 23 22 41 41 H 1.08006 * 119.85527 * 179.71956 * 25 24 23 42 42 H 1.07999 * 119.92774 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.07227 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 -0.0262 1.4422 5 7 4.5830 -0.0250 1.4423 6 6 5.3165 -1.2929 1.4181 7 6 5.5681 -1.7546 2.8305 8 1 5.2164 -1.1629 3.6627 9 6 6.2472 -2.9322 3.0601 10 7 6.4673 -3.3349 4.2927 11 14 6.8562 -3.9553 1.6207 12 1 8.2291 -3.5249 1.2532 13 1 6.8732 -5.3896 2.0049 14 1 5.9502 -3.7646 0.4596 15 6 5.2559 1.1426 1.4643 16 8 6.4687 1.1436 1.4648 17 6 4.5013 2.4468 1.4895 18 6 5.4796 3.5929 1.5117 19 6 5.5195 4.6175 0.6406 20 8 6.5406 5.4164 1.0091 21 6 7.1060 4.8782 2.1035 22 6 8.2602 5.4343 2.8409 23 6 8.7553 4.7759 3.9675 24 6 9.8360 5.2976 4.6481 25 6 10.4217 6.4767 4.2228 26 6 9.9325 7.1371 3.1099 27 6 8.8558 6.6232 2.4170 28 7 6.4651 3.7733 2.4040 29 1 2.9709 0.9003 -0.4970 30 1 2.9717 -0.8793 -0.5305 31 1 2.7550 -0.9259 1.9392 32 1 2.7542 0.8538 1.9727 33 1 4.7280 -2.0431 0.8900 34 1 6.2688 -1.1520 0.9069 35 1 6.9454 -4.1632 4.4542 36 1 3.8749 2.4869 2.3807 37 1 3.8742 2.5211 0.6011 38 1 4.8591 4.7691 -0.2004 39 1 8.2962 3.8578 4.3032 40 1 10.2230 4.7867 5.5175 41 1 11.2648 6.8832 4.7618 42 1 10.3944 8.0568 2.7828 43 1 8.4751 7.1396 1.5481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058330854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:57 Heat of formation + Delta-G solvation = 49.085764 kcal Electronic energy + Delta-G solvation = -27761.107570 eV Core-core repulsion = 23773.635223 eV Total energy + Delta-G solvation = -3987.472347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24648 -39.35876 -39.11783 -36.93956 -35.44951 -34.87239 -32.98408 -32.63679 -31.17678 -31.02411 -30.58946 -28.47789 -27.02397 -24.07207 -23.95257 -23.10407 -22.46454 -21.20369 -20.77345 -18.61373 -17.85733 -17.68515 -16.85961 -16.78237 -16.56655 -16.31613 -15.68386 -15.67322 -15.11344 -14.87116 -14.66231 -14.26544 -14.00495 -13.80396 -13.60917 -13.37272 -13.24911 -13.04138 -12.85251 -12.57459 -12.50543 -12.40857 -12.08586 -11.72719 -11.62518 -11.55810 -11.27079 -11.11802 -11.06987 -10.81862 -10.55401 -10.34720 -10.19855 -9.76368 -9.56242 -9.15051 -9.08123 -8.59861 -8.24163 -7.88221 -6.09133 -4.08329 0.57526 1.21522 1.76915 2.64067 2.65857 2.74021 2.78776 3.25000 3.27625 3.32825 3.35791 3.56003 3.70657 3.85982 4.13492 4.38098 4.64090 4.69441 4.77991 4.81519 4.89480 4.93072 5.02923 5.13142 5.22117 5.23746 5.26182 5.35239 5.40365 5.47132 5.62308 5.71603 5.77945 5.84354 5.90905 6.01063 6.11595 6.27784 6.31289 6.38222 6.61379 6.71906 6.88895 7.22130 7.50363 7.58487 7.80776 8.09879 8.45040 8.88247 8.96340 9.50446 11.04247 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.003230 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.760820 B = 8667.893572 C =11167.639673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.216 3.784 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.513 3.487 16 O -0.511 6.511 17 C -0.065 4.065 18 C 0.018 3.982 19 C -0.075 4.075 20 O -0.200 6.200 21 C 0.223 3.777 22 C -0.012 4.012 23 C -0.067 4.067 24 C -0.120 4.120 25 C -0.105 4.105 26 C -0.125 4.125 27 C -0.094 4.094 28 N -0.432 5.432 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.217 0.783 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 19.892 -6.683 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.096 3.904 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.298 3.702 16 O -0.385 6.385 17 C -0.106 4.106 18 C -0.104 4.104 19 C -0.146 4.146 20 O -0.087 6.087 21 C 0.019 3.981 22 C -0.013 4.013 23 C -0.086 4.086 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.113 4.113 28 N -0.160 5.160 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.233 0.767 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.174 19.357 -6.088 20.293 hybrid contribution 0.451 -0.384 -1.313 1.441 sum 0.277 18.973 -7.402 20.368 Atomic orbital electron populations 1.81224 1.13036 1.09202 1.08537 1.29065 0.95061 0.92931 0.93190 1.19910 0.81445 1.06239 1.01663 1.21342 0.81870 1.04879 0.92918 1.47862 1.04821 1.07316 1.72740 1.19697 0.92434 0.79720 0.98524 1.21319 1.37040 1.07022 0.91415 0.90609 1.24854 0.95250 0.97317 0.95527 1.69894 1.41299 1.22948 1.19283 0.86886 0.80164 0.79712 0.83096 1.19967 1.21146 1.19010 1.20015 0.88174 0.84401 0.77579 1.90734 1.13572 1.86664 1.47547 1.20141 0.95858 0.89694 1.04890 1.21106 0.97615 0.97416 0.94245 1.24761 0.93597 0.92984 1.03252 1.84449 1.37784 1.47361 1.39059 1.23793 0.97328 0.90337 0.86612 1.17293 0.92352 0.95949 0.95684 1.21338 0.95104 0.99520 0.92660 1.21166 0.95974 0.96273 1.00422 1.21350 0.99453 0.95196 0.96393 1.21028 0.96756 1.00449 0.96070 1.21207 0.95898 0.94475 0.99725 1.70595 1.05920 1.13038 1.26402 0.87528 0.86654 0.88480 0.90251 0.95053 0.94389 0.92566 0.87279 0.87748 0.76667 0.83948 0.85002 0.85621 0.85442 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.10 18.54 42.15 0.78 -5.32 16 2 C 0.22 2.35 15.43 -20.76 -0.32 2.03 16 3 C -0.05 -0.46 6.03 -29.52 -0.18 -0.63 16 4 C 0.12 1.43 5.17 -4.04 -0.02 1.41 16 5 N -0.60 -10.43 2.46 -175.05 -0.43 -10.86 16 6 C 0.22 4.79 4.23 -5.19 -0.02 4.77 16 7 C -0.53 -14.49 9.94 -34.44 -0.34 -14.83 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 11 Si 0.87 20.83 27.47 -169.99 -4.67 16.17 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 15 C 0.51 9.32 7.66 -10.99 -0.08 9.24 16 16 O -0.51 -12.02 15.15 5.56 0.08 -11.93 16 17 C -0.07 -0.83 4.82 -29.03 -0.14 -0.97 16 18 C 0.02 0.27 5.87 -82.88 -0.49 -0.22 16 19 C -0.08 -0.87 12.06 29.43 0.35 -0.52 16 20 O -0.20 -2.68 10.52 4.06 0.04 -2.64 16 21 C 0.22 3.41 7.90 -13.89 -0.11 3.31 16 22 C -0.01 -0.16 5.87 -104.98 -0.62 -0.77 16 23 C -0.07 -0.88 9.69 -39.19 -0.38 -1.26 16 24 C -0.12 -1.24 10.03 -39.64 -0.40 -1.64 16 25 C -0.11 -0.92 10.04 -39.50 -0.40 -1.31 16 26 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 27 C -0.09 -0.99 9.72 -39.19 -0.38 -1.37 16 28 N -0.43 -7.58 10.29 -7.97 -0.08 -7.66 16 29 H 0.11 0.68 7.22 -51.93 -0.38 0.31 16 30 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.11 1.25 7.40 -51.93 -0.38 0.87 16 37 H 0.10 0.82 7.15 -51.93 -0.37 0.45 16 38 H 0.22 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 2.08 7.83 -52.49 -0.41 1.66 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 1.16 7.90 -52.48 -0.41 0.75 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -38.07 381.84 -6.90 -44.97 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.14 Total: 0.16 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -4.01 Total: -2.29 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 1.04 Total: -50.19 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.13 Total: -14.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.07 -6.90 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -38.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds