Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48500 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47250 * 299.99606 * 3 2 1 6 6 H 1.48496 * 109.47544 * 59.99788 * 3 2 1 7 7 C 1.39038 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99733 * 189.60273 * 7 2 1 9 9 N 1.36875 * 120.00309 * 9.60202 * 7 2 1 10 10 C 1.34778 * 119.99479 * 44.30375 * 9 7 2 11 11 O 1.21594 * 120.00307 * 4.57522 * 10 9 7 12 12 C 1.47743 * 119.99663 * 184.56854 * 10 9 7 13 13 C 1.39673 * 120.12088 * 138.79212 * 12 10 9 14 14 C 1.37940 * 119.96081 * 180.02562 * 13 12 10 15 15 C 1.38310 * 120.20804 * 359.72899 * 14 13 12 16 16 C 1.38828 * 120.25212 * 0.54717 * 15 14 13 17 17 O 1.35910 * 119.97910 * 179.72622 * 16 15 14 18 18 C 1.42894 * 117.00185 * 359.72807 * 17 16 15 19 19 C 1.50704 * 109.47240 * 180.02562 * 18 17 16 20 20 C 1.38670 * 120.41785 * 270.25564 * 19 18 17 21 21 C 1.38632 * 118.42073 * 180.23932 * 20 19 18 22 22 C 1.38228 * 119.16063 * 359.74896 * 21 20 19 23 23 N 1.31863 * 120.76376 * 0.02562 * 22 21 20 24 24 C 1.31880 * 121.72221 * 359.97438 * 23 22 21 25 25 C 1.38465 * 120.03666 * 359.45176 * 16 15 14 26 26 C 1.46496 * 120.00068 * 224.30850 * 9 7 2 27 27 C 1.52998 * 117.50265 * 5.60398 * 26 9 7 28 28 C 1.52999 * 60.00368 * 252.51468 * 27 26 9 29 29 H 0.96998 * 120.00204 * 4.99393 * 1 2 3 30 30 H 1.08000 * 120.02295 * 0.02562 * 13 12 10 31 31 H 1.07993 * 119.90050 * 180.02562 * 14 13 12 32 32 H 1.08000 * 119.87295 * 180.27378 * 15 14 13 33 33 H 1.09002 * 109.47468 * 60.00237 * 18 17 16 34 34 H 1.08999 * 109.47106 * 299.99863 * 18 17 16 35 35 H 1.08002 * 120.79233 * 359.96363 * 20 19 18 36 36 H 1.07994 * 120.42109 * 179.72130 * 21 20 19 37 37 H 1.08000 * 119.61990 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.61532 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.10778 * 180.24738 * 25 16 15 40 40 H 1.09002 * 115.54813 * 151.31653 * 26 9 7 41 41 H 1.09005 * 117.49619 * 0.02562 * 27 26 9 42 42 H 1.08994 * 117.49995 * 145.02006 * 27 26 9 43 43 H 1.09002 * 117.49844 * 252.51686 * 28 27 26 44 44 H 1.08993 * 117.52140 * 107.47783 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 0.0006 5 1 1.8889 2.3965 -1.2126 6 1 1.8888 2.3966 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0776 -1.2105 0.1566 9 7 1.3390 -2.3813 -0.1967 10 6 0.4086 -2.4727 -1.1675 11 8 0.2229 -1.5371 -1.9217 12 6 -0.3856 -3.7097 -1.3154 13 6 -1.7528 -3.6360 -1.5914 14 6 -2.4912 -4.7931 -1.7283 15 6 -1.8810 -6.0275 -1.5988 16 6 -0.5238 -6.1108 -1.3189 17 8 0.0691 -7.3267 -1.1873 18 6 -0.7657 -8.4759 -1.3437 19 6 0.0593 -9.7243 -1.1644 20 6 0.6843 -10.3150 -2.2522 21 6 1.4288 -11.4652 -2.0408 22 6 1.5271 -11.9783 -0.7610 23 7 0.9226 -11.3871 0.2509 24 6 0.2063 -10.2920 0.0868 25 6 0.2274 -4.9560 -1.1794 26 6 1.6333 -3.5418 0.6476 27 6 2.6018 -3.3392 1.8145 28 6 3.0462 -4.1250 0.5793 29 1 -0.4850 0.8368 -0.0731 30 1 -2.2316 -2.6738 -1.6974 31 1 -3.5482 -4.7350 -1.9420 32 1 -2.4634 -6.9300 -1.7114 33 1 -1.2069 -8.4716 -2.3404 34 1 -1.5581 -8.4539 -0.5955 35 1 0.5896 -9.8917 -3.2413 36 1 1.9255 -11.9544 -2.8656 37 1 2.1055 -12.8737 -0.5879 38 1 -0.2746 -9.8361 0.9397 39 1 1.2841 -5.0196 -0.9657 40 1 0.8077 -4.2385 0.7934 41 1 3.0197 -2.3422 1.9544 42 1 2.4134 -3.9025 2.7285 43 1 3.1501 -5.2053 0.6805 44 1 3.7566 -3.6454 -0.0940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = 43.815579 kcal Electronic energy + Delta-G solvation = -28319.420864 eV Core-core repulsion = 24397.145895 eV Total energy + Delta-G solvation = -3922.274969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64374 -39.88691 -38.65652 -36.88206 -35.90284 -33.36435 -32.82985 -32.14136 -31.37588 -30.29948 -29.47533 -27.02439 -25.26037 -23.91508 -23.36257 -22.29722 -22.01380 -21.59799 -20.88232 -19.70469 -17.92662 -17.47481 -16.90750 -16.34464 -16.19602 -15.99053 -15.59253 -15.28790 -15.00546 -14.67992 -14.34831 -14.12904 -13.87611 -13.69793 -13.49542 -13.40167 -13.05570 -12.78174 -12.64442 -12.31409 -12.00703 -11.74969 -11.35770 -11.11788 -10.99399 -10.94684 -10.87595 -10.78818 -10.55568 -10.18413 -10.17335 -9.90658 -9.78769 -9.72270 -9.43256 -8.78967 -8.52090 -8.08370 -7.90642 -7.06611 -6.09742 -3.93514 0.65851 0.93151 1.48769 1.78532 3.10191 3.28828 3.36178 3.38712 3.66030 3.87803 4.11110 4.20662 4.39871 4.42218 4.43721 4.61280 4.63384 4.78727 4.89451 4.92189 4.99758 5.10230 5.16286 5.26978 5.33321 5.41934 5.57911 5.62771 5.71297 5.74025 5.77223 5.81073 5.88190 5.92488 6.07761 6.25318 6.28365 6.32173 6.46665 6.52406 6.72332 6.79385 6.94212 7.00963 7.02535 7.56568 7.58731 7.62301 8.23461 9.01689 9.12275 9.59191 10.24857 10.95175 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002799 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.312746 B =10000.027127 C =11066.675475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.062 3.938 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.418 5.418 10 C 0.517 3.483 11 O -0.521 6.521 12 C -0.052 4.052 13 C -0.108 4.108 14 C -0.092 4.092 15 C -0.210 4.210 16 C 0.113 3.887 17 O -0.310 6.310 18 C 0.106 3.894 19 C -0.144 4.144 20 C -0.051 4.051 21 C -0.176 4.176 22 C 0.104 3.896 23 N -0.487 5.487 24 C 0.124 3.876 25 C -0.133 4.133 26 C 0.069 3.931 27 C -0.176 4.176 28 C -0.208 4.208 29 H 0.265 0.735 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -21.190 -1.957 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.137 5.137 10 C 0.305 3.695 11 O -0.398 6.398 12 C -0.056 4.056 13 C -0.127 4.127 14 C -0.110 4.110 15 C -0.229 4.229 16 C 0.069 3.931 17 O -0.225 6.225 18 C 0.030 3.970 19 C -0.146 4.146 20 C -0.077 4.077 21 C -0.196 4.196 22 C -0.053 4.053 23 N -0.195 5.195 24 C -0.033 4.033 25 C -0.153 4.153 26 C -0.037 4.037 27 C -0.213 4.213 28 C -0.247 4.247 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.028 -20.955 -1.408 21.100 hybrid contribution 0.018 1.028 -0.860 1.340 sum -2.009 -19.927 -2.268 20.156 Atomic orbital electron populations 1.69830 1.06352 1.27601 1.42586 1.25313 0.95038 0.99423 0.95097 0.86105 0.79684 0.82538 0.77571 1.19512 1.20651 1.21027 1.18986 0.91537 0.82603 1.53086 0.90109 1.42651 1.35914 1.08783 1.26396 1.17644 0.83394 0.85890 0.82592 1.90622 1.67414 1.38349 1.43465 1.20433 0.94529 0.93856 0.96787 1.21212 0.93050 0.98818 0.99632 1.20820 0.99507 0.91615 0.99038 1.21163 0.93755 0.98738 1.09232 1.18795 0.91523 0.84420 0.98383 1.86130 1.37363 1.11694 1.87282 1.21394 0.91847 0.81676 1.02055 1.20573 1.01527 0.97289 0.95181 1.21580 0.92872 0.93998 0.99285 1.22174 1.00889 0.97486 0.99076 1.22873 0.95324 0.98615 0.88484 1.67770 1.07846 1.09249 1.34662 1.22764 0.93659 0.91041 0.95843 1.20925 1.01107 0.88976 1.04247 1.21982 0.91850 0.92904 0.96919 1.23116 1.04401 1.02063 0.91760 1.23346 1.00415 0.98550 1.02370 0.92471 0.85148 0.85914 0.86051 0.91025 0.90816 0.84494 0.84468 0.82578 0.82450 0.84125 0.87144 0.87502 0.89752 0.89590 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.48 11.25 55.50 0.62 -23.86 16 2 C 0.06 1.72 4.66 -17.45 -0.08 1.64 16 3 Si 0.91 21.65 29.57 -169.99 -5.03 16.63 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.33 -9.14 7.85 -15.00 -0.12 -9.26 16 8 H 0.08 2.13 7.32 -52.48 -0.38 1.74 16 9 N -0.42 -10.66 2.85 -108.83 -0.31 -10.97 16 10 C 0.52 13.59 6.45 -12.38 -0.08 13.51 16 11 O -0.52 -15.71 14.64 5.28 0.08 -15.64 16 12 C -0.05 -1.12 5.28 -104.99 -0.55 -1.67 16 13 C -0.11 -2.07 9.65 -39.16 -0.38 -2.45 16 14 C -0.09 -1.37 10.03 -39.66 -0.40 -1.77 16 15 C -0.21 -2.88 9.04 -39.34 -0.36 -3.24 16 16 C 0.11 1.75 6.68 -39.28 -0.26 1.49 16 17 O -0.31 -4.26 10.12 -19.46 -0.20 -4.45 16 18 C 0.11 1.03 4.89 36.01 0.18 1.21 16 19 C -0.14 -1.38 5.53 -104.48 -0.58 -1.95 16 20 C -0.05 -0.43 9.86 -39.28 -0.39 -0.82 16 21 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 22 C 0.10 0.87 11.18 -17.54 -0.20 0.67 16 23 N -0.49 -5.19 10.36 -13.25 -0.14 -5.33 16 24 C 0.12 1.24 10.86 -17.55 -0.19 1.05 16 25 C -0.13 -2.45 7.42 -39.01 -0.29 -2.74 16 26 C 0.07 1.44 4.39 -67.93 -0.30 1.14 16 27 C -0.18 -3.25 9.80 -26.73 -0.26 -3.51 16 28 C -0.21 -3.68 9.54 -26.73 -0.26 -3.94 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.25 6.28 -52.49 -0.33 0.93 16 33 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 34 H 0.07 0.61 7.62 -51.93 -0.40 0.21 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.14 2.60 5.54 -52.49 -0.29 2.31 16 40 H 0.11 2.18 5.87 -51.93 -0.30 1.88 16 41 H 0.11 2.15 6.79 -51.93 -0.35 1.79 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -34.41 371.42 -9.67 -44.08 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.39 Total: 6.29 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -4.91 Total: -12.35 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.18 Total: -40.15 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.12 Total: -20.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.41 -9.67 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.897 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds