Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 120.00018 * 2 1 4 4 C 1.38238 * 119.99958 * 180.02562 * 3 2 1 5 5 C 1.38229 * 119.99975 * 359.97438 * 4 3 2 6 6 S 1.76202 * 119.99954 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40072 * 336.45673 * 6 5 4 8 8 O 1.42106 * 106.40333 * 203.54084 * 6 5 4 9 9 N 1.65600 * 107.22342 * 90.00004 * 6 5 4 10 10 C 1.46497 * 120.00073 * 64.99747 * 9 6 5 11 11 C 1.52997 * 109.47245 * 165.00311 * 10 9 6 12 12 H 1.08997 * 109.52451 * 304.92169 * 11 10 9 13 13 C 1.53349 * 109.68668 * 184.75190 * 11 10 9 14 14 C 1.53032 * 109.61009 * 178.74803 * 13 11 10 15 15 C 1.53196 * 109.31410 * 61.37300 * 14 13 11 16 16 N 1.46929 * 108.77500 * 305.36690 * 15 14 13 17 17 C 1.36930 * 120.63078 * 233.58504 * 16 15 14 18 18 H 1.07996 * 120.00049 * 151.85197 * 17 16 15 19 19 C 1.38816 * 120.00324 * 331.84993 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.06571 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.06593 * 19 17 16 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47085 * 239.99957 * 21 19 17 25 25 C 1.46924 * 118.73622 * 53.60730 * 16 15 14 26 26 C 1.38237 * 120.00227 * 0.25479 * 5 4 3 27 27 C 1.38232 * 119.99508 * 359.49237 * 26 5 4 28 28 H 1.09004 * 109.47221 * 90.00309 * 1 2 3 29 29 H 1.09008 * 109.47461 * 209.99645 * 1 2 3 30 30 H 1.08995 * 109.47469 * 329.99869 * 1 2 3 31 31 H 1.07998 * 120.00021 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99900 * 179.97438 * 4 3 2 33 33 H 0.96995 * 119.99510 * 245.00711 * 9 6 5 34 34 H 1.09001 * 109.47168 * 45.00231 * 10 9 6 35 35 H 1.09008 * 109.47156 * 285.00657 * 10 9 6 36 36 H 1.09005 * 109.41370 * 58.70823 * 13 11 10 37 37 H 1.09000 * 109.42245 * 298.78896 * 13 11 10 38 38 H 1.09003 * 109.49726 * 301.42568 * 14 13 11 39 39 H 1.08996 * 109.50231 * 181.32584 * 14 13 11 40 40 H 1.09002 * 109.58565 * 185.57962 * 15 14 13 41 41 H 1.09002 * 109.58482 * 65.15198 * 15 14 13 42 42 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.59145 * 66.17901 * 25 16 15 44 44 H 1.09001 * 109.58665 * 186.46252 * 25 16 15 45 45 H 1.08001 * 120.00061 * 179.72994 * 26 5 4 46 46 H 1.08009 * 119.99950 * 180.22979 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 16 6.0336 0.0000 -0.0019 7 8 6.4344 1.2494 -0.5473 8 8 6.4345 -1.2500 -0.5461 9 7 6.5252 0.0007 1.5795 10 6 6.2306 -1.1487 2.4386 11 6 7.0904 -1.0748 3.7020 12 1 8.1416 -1.0006 3.4234 13 6 6.8737 -2.3348 4.5488 14 6 7.7578 -2.2735 5.7964 15 6 7.3648 -1.0541 6.6364 16 7 7.4318 0.1449 5.7898 17 6 8.1707 1.2311 6.1758 18 1 8.5947 1.8882 5.4309 19 6 8.3749 1.4879 7.5247 20 7 7.6092 0.9123 8.4273 21 14 9.7362 2.6503 8.0587 22 1 10.4486 3.1618 6.8603 23 1 9.1488 3.7888 8.8094 24 1 10.6937 1.9237 8.9307 25 6 6.6905 0.1562 4.5214 26 6 3.5805 -1.1972 -0.0053 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6581 2.1324 0.0004 32 1 4.1205 2.1324 -0.0010 33 1 7.0081 0.7622 1.9368 34 1 6.4530 -2.0706 1.9012 35 1 5.1763 -1.1348 2.7153 36 1 7.1346 -3.2153 3.9616 37 1 5.8272 -2.3949 4.8479 38 1 8.8027 -2.1882 5.4980 39 1 7.6199 -3.1804 6.3850 40 1 8.0550 -0.9493 7.4736 41 1 6.3491 -1.1805 7.0112 42 1 7.7516 1.0920 9.3698 43 1 5.6198 0.1285 4.7235 44 1 6.9338 1.0609 3.9640 45 1 4.1205 -2.1325 -0.0097 46 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -42.409909 kcal Electronic energy + Delta-G solvation = -27446.226568 eV Core-core repulsion = 23655.656533 eV Total energy + Delta-G solvation = -3790.570035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -39.58644 -38.13640 -37.24337 -35.88301 -35.14968 -33.32720 -32.88887 -31.32676 -30.44440 -29.98556 -27.60714 -25.39148 -25.00335 -23.14690 -22.21138 -22.06226 -21.05283 -19.61412 -19.05656 -18.13868 -17.38244 -16.70223 -16.27493 -15.71532 -15.52845 -14.87294 -14.81495 -14.57255 -14.43103 -14.21056 -13.83243 -13.75704 -13.50016 -12.97755 -12.78357 -12.68889 -12.63425 -12.52321 -12.36787 -12.21464 -12.12909 -12.06497 -11.92126 -11.44658 -11.22003 -11.00399 -10.93157 -10.68348 -10.54097 -10.22625 -10.18181 -9.92185 -9.66475 -9.46900 -9.39119 -9.33356 -9.29729 -8.48030 -6.68263 -5.80329 -3.23130 0.30540 0.60717 1.03885 2.91715 3.26849 3.36291 3.44604 3.46774 3.73085 4.21166 4.42831 4.47199 4.50442 4.62884 4.94303 5.00293 5.01991 5.15960 5.22779 5.27949 5.32796 5.36395 5.39996 5.50788 5.60519 5.65721 5.68161 5.75635 5.83075 5.88069 5.92723 6.08360 6.14386 6.21875 6.33782 6.36909 6.57010 6.58685 6.68357 6.76895 6.84584 6.94893 7.04021 7.39054 7.66163 7.78694 8.43637 9.19969 9.83356 10.39904 11.27965 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.002925 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.754193 B = 9570.386807 C = 9718.405043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.033 4.033 3 C -0.144 4.144 4 C -0.013 4.013 5 C -0.681 4.681 6 S 2.696 3.304 7 O -0.963 6.963 8 O -0.960 6.960 9 N -1.111 6.111 10 C 0.124 3.876 11 C -0.113 4.113 12 H 0.077 0.923 13 C -0.102 4.102 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.153 3.847 26 C -0.016 4.016 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.422 0.578 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.018 0.982 44 H 0.051 0.949 45 H 0.140 0.860 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 -5.220 -16.281 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 C -0.162 4.162 4 C -0.032 4.032 5 C -0.767 4.767 6 S 2.786 3.214 7 O -0.953 6.953 8 O -0.950 6.950 9 N -0.873 5.873 10 C -0.003 4.003 11 C -0.134 4.134 12 H 0.096 0.904 13 C -0.140 4.140 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.026 3.974 26 C -0.036 4.036 27 C -0.163 4.163 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.158 0.842 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.933 -5.336 -16.896 21.363 hybrid contribution 0.068 0.921 0.906 1.294 sum -11.865 -4.415 -15.990 20.395 Atomic orbital electron populations 1.20941 0.90633 1.03554 1.02876 1.20280 0.96480 0.93372 0.93175 1.21189 0.94210 0.98024 1.02818 1.20943 0.94713 0.96705 0.90818 1.30982 1.27398 0.99514 1.18822 1.01754 0.73594 0.73539 0.72562 1.93586 1.81439 1.43776 1.76490 1.93575 1.80585 1.44322 1.76558 1.55431 1.72082 1.29013 1.30759 1.21414 0.99720 0.86998 0.92131 1.21955 0.99764 0.98651 0.93073 0.90427 1.21435 1.00098 0.95714 0.96757 1.22171 0.99210 0.99993 0.96769 1.20796 0.99179 0.82809 0.92866 1.44035 1.54938 1.13341 1.19070 1.19220 1.24237 1.04087 0.90716 0.91649 1.25044 0.99002 0.98996 0.96585 1.70049 1.37634 1.46525 1.00419 0.86238 0.81919 0.80286 0.78420 1.20216 1.21754 1.21579 1.20898 0.94277 0.94151 0.88067 1.20949 0.94737 0.96632 0.91242 1.21175 0.94191 0.97977 1.02926 0.90437 0.90900 0.90888 0.85061 0.84126 0.74102 0.90683 0.91952 0.93322 0.92543 0.92686 0.93203 0.89593 0.96498 0.93713 0.96391 0.93020 0.84179 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.03 -0.29 5.88 -104.63 -0.62 -0.90 16 3 C -0.14 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.01 -0.14 9.52 -39.58 -0.38 -0.51 16 5 C -0.68 -7.83 5.95 -39.59 -0.24 -8.06 16 6 S 2.70 34.58 5.74 -107.50 -0.62 33.96 16 7 O -0.96 -14.59 17.28 -57.17 -0.99 -15.58 16 8 O -0.96 -14.34 16.75 -57.17 -0.96 -15.29 16 9 N -1.11 -13.89 5.88 -10.61 -0.06 -13.95 16 10 C 0.12 1.59 5.63 -4.04 -0.02 1.56 16 11 C -0.11 -1.79 2.46 -90.34 -0.22 -2.02 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.10 -1.59 5.19 -26.53 -0.14 -1.73 16 14 C -0.14 -2.61 6.08 -26.61 -0.16 -2.78 16 15 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 16 N -0.59 -14.37 2.99 -172.32 -0.52 -14.88 16 17 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 18 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 21 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.15 3.00 5.59 -3.71 -0.02 2.98 16 26 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 27 C -0.14 -1.30 9.70 -39.58 -0.38 -1.68 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.38 7.62 -52.49 -0.40 0.98 16 33 H 0.42 5.20 7.48 -34.46 -0.26 4.95 16 34 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.98 6.84 -51.93 -0.36 0.62 16 45 H 0.14 1.28 7.61 -52.49 -0.40 0.88 16 46 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -33.53 380.92 -11.80 -45.34 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.17 Total: 2.25 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.83 Total: -18.83 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.04 Total: -54.06 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.95 Total: -30.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 34.58 SS G_CDS: -0.62 Total: 33.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.53 -11.80 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.928 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds