Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38231 * 120.00353 * 2 1 4 4 C 1.38226 * 120.00068 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00290 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.00305 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40280 * 336.45857 * 6 5 4 8 8 O 1.42102 * 106.40262 * 203.53449 * 6 5 4 9 9 N 1.65600 * 107.21770 * 89.99892 * 6 5 4 10 10 C 1.46502 * 120.00393 * 64.99796 * 9 6 5 11 11 C 1.53000 * 109.47158 * 164.99609 * 10 9 6 12 12 H 1.09004 * 109.49607 * 55.00768 * 11 10 9 13 13 C 1.53040 * 109.49335 * 175.06497 * 11 10 9 14 14 C 1.53045 * 109.53552 * 181.35176 * 13 11 10 15 15 C 1.53187 * 109.31386 * 298.63585 * 14 13 11 16 16 N 1.46927 * 108.77552 * 54.63859 * 15 14 13 17 17 C 1.36935 * 120.63389 * 126.41302 * 16 15 14 18 18 H 1.08005 * 119.99603 * 207.67754 * 17 16 15 19 19 C 1.38806 * 120.00126 * 27.67336 * 17 16 15 20 20 N 1.31614 * 120.00086 * 17.35643 * 19 17 16 21 21 Si 1.86802 * 120.00189 * 197.35767 * 19 17 16 22 22 H 1.48501 * 109.47024 * 59.99917 * 21 19 17 23 23 H 1.48502 * 109.47281 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47155 * 300.00048 * 21 19 17 25 25 C 1.46935 * 118.73713 * 306.39090 * 16 15 14 26 26 C 1.38234 * 119.99883 * 0.24664 * 5 4 3 27 27 C 1.38235 * 119.99436 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47012 * 89.99725 * 1 2 3 29 29 H 1.08998 * 109.47228 * 209.99815 * 1 2 3 30 30 H 1.09005 * 109.46982 * 330.00004 * 1 2 3 31 31 H 1.08001 * 119.99784 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.00258 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99742 * 245.00041 * 9 6 5 34 34 H 1.08999 * 109.46591 * 45.00281 * 10 9 6 35 35 H 1.08997 * 109.47303 * 285.00413 * 10 9 6 36 36 H 1.08992 * 109.46349 * 301.37317 * 13 11 10 37 37 H 1.08998 * 109.46178 * 61.33657 * 13 11 10 38 38 H 1.09007 * 109.49603 * 58.59370 * 14 13 11 39 39 H 1.09000 * 109.49622 * 178.68379 * 14 13 11 40 40 H 1.09004 * 109.58977 * 174.41771 * 15 14 13 41 41 H 1.08991 * 109.59133 * 294.84837 * 15 14 13 42 42 H 0.97002 * 120.00256 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58085 * 293.82404 * 25 16 15 44 44 H 1.08991 * 109.58558 * 173.39953 * 25 16 15 45 45 H 1.07999 * 120.00459 * 179.73220 * 26 5 4 46 46 H 1.08000 * 120.00201 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 16 6.0337 -0.0002 -0.0030 7 8 6.4346 1.2497 -0.5472 8 8 6.4345 -1.2498 -0.5482 9 7 6.5251 -0.0009 1.5784 10 6 6.2304 -1.1511 2.4367 11 6 7.0903 -1.0783 3.7001 12 1 6.9339 -0.1182 4.1918 13 6 6.6960 -2.2099 4.6520 14 6 7.5322 -2.1178 5.9305 15 6 9.0147 -2.2764 5.5788 16 7 9.3666 -1.2832 4.5548 17 6 10.4194 -0.4284 4.7446 18 1 10.4210 0.5406 4.2675 19 6 11.4844 -0.8070 5.5503 20 7 11.6626 -2.0756 5.8523 21 14 12.6648 0.4838 6.2059 22 1 11.9171 1.4622 7.0360 23 1 13.7069 -0.1737 7.0348 24 1 13.3084 1.1893 5.0686 25 6 8.5677 -1.2250 3.3230 26 6 3.5805 -1.1973 -0.0073 27 6 2.1981 -1.1972 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 0.0004 32 1 4.1207 2.1323 -0.0010 33 1 7.0081 0.7603 1.9365 34 1 6.4529 -2.0724 1.8984 35 1 5.1762 -1.1374 2.7133 36 1 5.6389 -2.1220 4.9025 37 1 6.8759 -3.1702 4.1689 38 1 7.3716 -1.1479 6.4012 39 1 7.2346 -2.9099 6.6177 40 1 9.6212 -2.1132 6.4697 41 1 9.1932 -3.2794 5.1915 42 1 12.4071 -2.3403 6.4150 43 1 8.7097 -2.1425 2.7518 44 1 8.8793 -0.3683 2.7256 45 1 4.1205 -2.1326 -0.0125 46 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -41.468598 kcal Electronic energy + Delta-G solvation = -27343.035645 eV Core-core repulsion = 23552.506428 eV Total energy + Delta-G solvation = -3790.529217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 10.05 seconds Orbital eigenvalues (eV) -39.64371 -38.12567 -37.21909 -35.85280 -35.14177 -33.38183 -32.87397 -31.38303 -30.41308 -29.97687 -27.66182 -25.34343 -24.98173 -23.19915 -22.25575 -22.00912 -21.06425 -19.69997 -19.05414 -18.09832 -17.33006 -16.66340 -16.28529 -15.76143 -15.52731 -14.96479 -14.74488 -14.56587 -14.43440 -14.25928 -13.89165 -13.84401 -13.48588 -12.84437 -12.76442 -12.74171 -12.67631 -12.50958 -12.40003 -12.19431 -12.09563 -12.02931 -11.91607 -11.49958 -11.25416 -10.97898 -10.95017 -10.69298 -10.47925 -10.22648 -10.15967 -9.89631 -9.58545 -9.55050 -9.42687 -9.37652 -9.28973 -8.43818 -6.64924 -5.76574 -3.18666 0.28551 0.56992 0.97763 2.90577 3.24353 3.40272 3.45744 3.46905 3.74144 4.19095 4.36529 4.46422 4.50641 4.57582 4.89823 4.96365 4.99539 5.09651 5.22861 5.24981 5.26531 5.35609 5.42840 5.51246 5.54106 5.61628 5.68049 5.76735 5.78748 5.82179 5.94034 6.07744 6.08472 6.22546 6.36559 6.39025 6.51233 6.62480 6.69928 6.81708 6.87078 6.98459 7.03855 7.41478 7.69020 7.81349 8.47192 9.23675 9.87306 10.43886 11.31857 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002735 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.524426 B =10236.326193 C =10909.494056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.145 4.145 4 C -0.015 4.015 5 C -0.681 4.681 6 S 2.695 3.305 7 O -0.962 6.962 8 O -0.955 6.955 9 N -1.110 6.110 10 C 0.123 3.877 11 C -0.110 4.110 12 H 0.075 0.925 13 C -0.102 4.102 14 C -0.141 4.141 15 C 0.168 3.832 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.152 3.848 26 C -0.016 4.016 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.422 0.578 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.142 0.858 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.268 2.760 -9.354 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.164 4.164 4 C -0.034 4.034 5 C -0.767 4.767 6 S 2.784 3.216 7 O -0.953 6.953 8 O -0.945 6.945 9 N -0.871 5.871 10 C -0.003 4.003 11 C -0.132 4.132 12 H 0.093 0.907 13 C -0.140 4.140 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.025 3.975 26 C -0.035 4.035 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.160 0.840 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.676 2.520 -10.063 24.936 hybrid contribution 0.076 0.932 0.860 1.271 sum -22.599 3.452 -9.202 24.644 Atomic orbital electron populations 1.20939 0.90641 1.03460 1.02937 1.20280 0.96458 0.93376 0.93319 1.21175 0.94199 0.97976 1.03003 1.20938 0.94679 0.96701 0.91056 1.31061 1.27609 0.99461 1.18551 1.01840 0.73517 0.73648 0.72611 1.93584 1.81371 1.43842 1.76464 1.93593 1.80347 1.44197 1.76372 1.55404 1.71982 1.28799 1.30955 1.21433 0.98782 0.87461 0.92632 1.21892 0.97912 0.99932 0.93485 0.90695 1.21387 0.98125 0.97875 0.96647 1.22169 0.99680 1.00428 0.95794 1.20801 0.89771 0.91055 0.94120 1.44048 1.32888 1.40394 1.14088 1.19139 0.96031 0.94980 1.28136 0.91727 1.25027 0.96835 0.95607 1.02191 1.70029 1.30984 1.13901 1.39761 0.86375 0.80450 0.81065 0.78903 1.21097 1.21671 1.20869 1.20919 0.88230 0.98868 0.89494 1.20989 0.94729 0.96756 0.91034 1.21191 0.94203 0.97986 1.02865 0.90401 0.90913 0.90965 0.85128 0.84181 0.74256 0.90329 0.92346 0.93529 0.92389 0.92785 0.93248 0.89557 0.96441 0.93608 0.96138 0.92806 0.84050 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.03 -0.27 5.88 -104.62 -0.62 -0.88 16 3 C -0.14 -1.22 9.70 -39.59 -0.38 -1.60 16 4 C -0.01 -0.15 9.52 -39.59 -0.38 -0.52 16 5 C -0.68 -7.52 5.95 -39.58 -0.24 -7.76 16 6 S 2.69 35.06 5.74 -107.50 -0.62 34.44 16 7 O -0.96 -14.69 17.28 -57.17 -0.99 -15.68 16 8 O -0.96 -15.03 16.75 -57.17 -0.96 -15.99 16 9 N -1.11 -13.74 5.61 -10.61 -0.06 -13.80 16 10 C 0.12 1.57 5.62 -4.04 -0.02 1.55 16 11 C -0.11 -1.75 2.36 -90.50 -0.21 -1.97 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 14 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 15 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 16 N -0.59 -14.66 3.00 -172.33 -0.52 -15.18 16 17 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.06 4.91 -17.44 -0.09 -0.03 16 20 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 21 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.15 3.10 5.62 -3.71 -0.02 3.08 16 26 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 27 C -0.14 -1.21 9.70 -39.58 -0.38 -1.60 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.14 1.25 7.62 -52.48 -0.40 0.85 16 33 H 0.42 4.96 8.41 -34.47 -0.29 4.67 16 34 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 2.29 6.04 -51.93 -0.31 1.97 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 1.08 7.51 -51.93 -0.39 0.69 16 45 H 0.14 1.29 7.61 -52.49 -0.40 0.89 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -34.15 382.10 -11.84 -45.99 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.23 Total: 1.48 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.82 Total: -18.14 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.05 Total: -54.59 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.95 Total: -31.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 16 Polarization: 35.06 SS G_CDS: -0.62 Total: 34.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.15 -11.84 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.525 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.06 seconds