Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36027 * 117.00080 * 2 1 4 4 C 1.38496 * 120.06861 * 359.72461 * 3 2 1 5 5 C 1.38285 * 120.02707 * 180.25280 * 4 3 2 6 6 C 1.38352 * 120.16988 * 0.04369 * 5 4 3 7 7 Cl 1.73599 * 119.93311 * 179.97438 * 6 5 4 8 8 C 1.38321 * 120.13623 * 359.95521 * 6 5 4 9 9 C 1.38718 * 119.96493 * 0.02562 * 8 6 5 10 10 N 1.39965 * 120.08376 * 179.97438 * 9 8 6 11 11 C 1.46504 * 119.99772 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.47260 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47518 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99569 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00430 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00069 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99796 * 224.49138 * 16 15 13 18 18 C 1.38948 * 120.00478 * 44.48406 * 16 15 13 19 19 N 1.31415 * 119.99753 * 17.98879 * 18 16 15 20 20 Si 1.86804 * 120.00488 * 197.99042 * 18 16 15 21 21 H 1.48497 * 109.46912 * 59.99887 * 20 18 16 22 22 H 1.48490 * 109.47305 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46484 * 300.00125 * 20 18 16 24 24 C 1.46502 * 119.99629 * 359.97438 * 15 13 12 25 25 C 1.52997 * 117.49650 * 183.27359 * 24 15 13 26 26 C 1.52998 * 117.49550 * 114.61227 * 24 15 13 27 27 H 1.09004 * 109.46855 * 300.00338 * 1 2 3 28 28 H 1.09001 * 109.46969 * 59.99670 * 1 2 3 29 29 H 1.08994 * 109.47643 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.98321 * 0.25615 * 4 3 2 31 31 H 1.08003 * 119.91214 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.01873 * 180.02562 * 8 6 5 33 33 H 0.97001 * 120.00372 * 180.02562 * 10 9 8 34 34 H 1.09003 * 109.47293 * 300.00828 * 11 10 9 35 35 H 1.09006 * 109.46981 * 60.00641 * 11 10 9 36 36 H 1.09010 * 109.46973 * 299.99989 * 12 11 10 37 37 H 1.08999 * 109.47607 * 59.99801 * 12 11 10 38 38 H 0.96998 * 120.00322 * 174.95311 * 19 18 16 39 39 H 1.09002 * 115.55023 * 328.94348 * 24 15 13 40 40 H 1.09006 * 117.49864 * 359.97438 * 25 24 15 41 41 H 1.08991 * 117.50017 * 145.02424 * 25 24 15 42 42 H 1.08995 * 117.50155 * 214.97612 * 26 24 15 43 43 H 1.09005 * 117.50284 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2937 2.3744 -0.0058 5 6 1.9224 3.6061 -0.0110 6 6 3.3039 3.6816 -0.0115 7 17 4.0868 5.2310 -0.0188 8 6 4.0625 2.5250 -0.0057 9 6 3.4377 1.2865 0.0000 10 7 4.2030 0.1146 0.0053 11 6 5.6658 0.1950 0.0053 12 6 6.2542 -1.2172 0.0110 13 6 7.7589 -1.1346 0.0117 14 8 8.3068 -0.0524 0.0076 15 7 8.4959 -2.2630 0.0169 16 6 9.8647 -2.1877 0.0181 17 1 10.4412 -2.8269 -0.6343 18 6 10.5105 -1.2891 0.8584 19 7 9.8715 -0.7735 1.8845 20 14 12.2869 -0.8138 0.5297 21 1 12.3915 -0.1881 -0.8129 22 1 12.7403 0.1515 1.5629 23 1 13.1410 -2.0277 0.5781 24 6 7.8341 -3.5700 0.0224 25 6 8.7238 -4.8119 0.1057 26 6 8.0197 -4.4609 -1.2075 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2152 2.3189 -0.0061 31 1 1.3335 4.5114 -0.0151 32 1 5.1408 2.5861 -0.0057 33 1 3.7648 -0.7508 0.0089 34 1 6.0007 0.7243 -0.8868 35 1 6.0001 0.7318 0.8932 36 1 5.9194 -1.7468 0.9030 37 1 5.9199 -1.7538 -0.8770 38 1 10.3424 -0.2039 2.5127 39 1 6.8699 -3.6066 0.5296 40 1 9.8015 -4.6565 0.1559 41 1 8.3448 -5.6658 0.6672 42 1 7.1779 -5.0841 -1.5092 43 1 8.6338 -4.0745 -2.0209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058391014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = -10.388378 kcal Electronic energy + Delta-G solvation = -26528.671943 eV Core-core repulsion = 22601.613665 eV Total energy + Delta-G solvation = -3927.058278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33527 -38.70031 -37.76620 -36.62431 -36.12966 -35.27114 -32.88598 -31.45743 -30.70756 -30.07534 -28.36504 -27.22299 -25.29887 -23.43404 -22.17648 -21.75049 -21.40232 -21.05192 -19.20854 -18.30393 -17.20250 -16.65012 -16.14026 -16.00392 -15.91119 -15.09319 -15.05033 -14.73377 -14.47302 -14.30868 -14.06420 -13.78555 -13.57771 -13.40474 -12.82124 -12.62798 -12.51051 -12.08481 -12.01136 -11.85485 -11.39736 -11.32490 -11.13262 -11.04195 -10.88432 -10.84773 -10.82256 -10.72277 -10.50948 -10.20885 -9.99533 -9.86604 -9.76152 -8.71809 -8.50773 -8.06873 -7.16411 -7.04883 -6.12375 -3.88606 1.20647 1.42890 2.20516 3.10305 3.29808 3.37598 3.40622 3.54452 3.66848 4.08225 4.27244 4.66103 4.74349 4.81719 4.85202 4.95526 5.03799 5.19930 5.25569 5.27038 5.39603 5.41974 5.54622 5.59078 5.63432 5.71288 5.75332 5.80112 5.95050 6.11770 6.13961 6.19893 6.28718 6.37001 6.42357 6.46093 6.53908 6.72387 6.90951 7.03606 7.46300 7.60531 7.87031 8.25766 9.04468 9.12577 9.64258 10.25737 10.96774 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.003025 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.498018 B = 9254.849318 C =11347.200313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.050 3.950 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.014 4.014 7 Cl -0.076 7.076 8 C -0.163 4.163 9 C 0.219 3.781 10 N -0.736 5.736 11 C 0.141 3.859 12 C -0.143 4.143 13 C 0.488 3.512 14 O -0.533 6.533 15 N -0.427 5.427 16 C -0.351 4.351 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.834 5.834 20 Si 0.913 3.087 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.278 1.278 24 C 0.075 3.925 25 C -0.174 4.174 26 C -0.208 4.208 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.265 0.735 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 1.422 -3.017 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C 0.002 3.998 4 C -0.172 4.172 5 C -0.163 4.163 6 C -0.041 4.041 7 Cl -0.047 7.047 8 C -0.187 4.187 9 C 0.113 3.887 10 N -0.365 5.365 11 C 0.017 3.983 12 C -0.184 4.184 13 C 0.274 3.726 14 O -0.411 6.411 15 N -0.148 5.148 16 C -0.478 4.478 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.467 5.467 20 Si 0.740 3.260 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.204 1.204 24 C -0.032 4.032 25 C -0.211 4.211 26 C -0.247 4.247 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.095 2.146 -2.874 18.447 hybrid contribution 0.450 0.004 0.045 0.452 sum -17.645 2.150 -2.829 17.999 Atomic orbital electron populations 1.22985 0.78568 1.03693 1.01093 1.85992 1.21108 1.26389 1.89798 1.18470 0.90304 0.84964 1.06084 1.20834 0.99572 0.91116 1.05664 1.20480 0.92107 0.97682 1.06014 1.20465 0.92411 0.86098 1.05140 1.98358 1.81175 1.28158 1.97002 1.20440 1.00846 0.88747 1.08700 1.16988 0.86912 0.87713 0.97051 1.44775 1.05602 1.05142 1.80941 1.21120 0.77149 0.97423 1.02581 1.21714 0.96967 0.96917 1.02811 1.19500 0.86601 0.84983 0.81479 1.90545 1.72721 1.27199 1.50594 1.42735 1.05207 1.00783 1.66044 1.18796 0.80057 1.25354 1.23547 0.90586 1.25235 0.98596 0.96119 0.93638 1.69804 1.36853 1.29552 1.10454 0.86268 0.82962 0.78282 0.78461 1.19912 1.21157 1.20410 1.21703 0.97084 0.84628 0.99740 1.23070 1.00732 0.97823 0.99504 1.23323 1.03241 1.05033 0.93078 0.92862 0.92868 0.88447 0.84955 0.85363 0.83846 0.76087 0.91491 0.91138 0.90233 0.90224 0.92504 0.88072 0.87482 0.89823 0.89832 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.62 9.74 -19.83 -0.19 -3.81 16 3 C 0.05 0.63 6.70 -39.09 -0.26 0.37 16 4 C -0.15 -1.64 9.04 -39.47 -0.36 -1.99 16 5 C -0.14 -1.61 9.82 -39.52 -0.39 -2.00 16 6 C -0.01 -0.18 6.32 -39.51 -0.25 -0.43 16 7 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 8 C -0.16 -2.40 9.09 -39.37 -0.36 -2.75 16 9 C 0.22 3.15 6.67 -83.57 -0.56 2.59 16 10 N -0.74 -10.68 5.73 -58.49 -0.34 -11.01 16 11 C 0.14 2.43 4.21 -4.04 -0.02 2.41 16 12 C -0.14 -2.58 4.43 -27.89 -0.12 -2.70 16 13 C 0.49 11.89 6.96 -10.99 -0.08 11.81 16 14 O -0.53 -15.14 13.76 5.55 0.08 -15.06 16 15 N -0.43 -10.40 2.83 -107.73 -0.31 -10.71 16 16 C -0.35 -9.44 7.91 -14.94 -0.12 -9.55 16 17 H 0.08 1.99 7.27 -52.49 -0.38 1.60 16 18 C 0.07 2.08 4.39 -17.47 -0.08 2.01 16 19 N -0.83 -24.39 11.74 55.50 0.65 -23.74 16 20 Si 0.91 21.83 29.59 -169.99 -5.03 16.80 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.07 1.45 5.87 -67.93 -0.40 1.05 16 25 C -0.17 -3.06 9.80 -26.69 -0.26 -3.32 16 26 C -0.21 -3.44 10.36 -26.69 -0.28 -3.72 16 27 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.14 2.25 6.74 -52.48 -0.35 1.89 16 33 H 0.40 5.33 7.84 -40.82 -0.32 5.01 16 34 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 35 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 36 H 0.08 1.35 7.56 -51.92 -0.39 0.95 16 37 H 0.08 1.27 8.11 -51.93 -0.42 0.84 16 38 H 0.26 7.48 8.32 -40.82 -0.34 7.14 16 39 H 0.10 1.73 6.96 -51.93 -0.36 1.37 16 40 H 0.11 2.11 6.73 -51.93 -0.35 1.76 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -32.20 372.64 -9.33 -41.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.78 Total: 7.90 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.53 Total: -5.03 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.01 Total: -45.46 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.12 Total: -18.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.20 -9.33 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058391014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.138 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds