Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39048 * 110.99946 * 176.80976 * 14 13 12 16 16 C 1.39127 * 119.69752 * 303.53241 * 15 14 13 17 17 C 1.38301 * 119.10678 * 179.72915 * 16 15 14 18 18 C 1.38946 * 118.49640 * 0.53028 * 17 16 15 19 19 Br 1.89106 * 120.34484 * 179.74884 * 18 17 16 20 20 C 1.38107 * 119.31295 * 359.73181 * 18 17 16 21 21 N 1.31975 * 120.84032 * 359.97438 * 20 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08002 * 120.44589 * 0.02562 * 16 15 14 34 34 H 1.07996 * 120.75020 * 180.24004 * 17 16 15 35 35 H 1.07994 * 119.58216 * 180.02562 * 20 18 17 36 36 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 37 37 H 1.09002 * 109.48626 * 179.28754 * 22 14 13 38 38 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 39 39 H 1.09000 * 109.48854 * 63.21719 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1663 -8.7488 0.9101 16 6 -0.5966 -9.1096 2.0162 17 6 -1.2877 -10.3074 1.9950 18 6 -1.1835 -11.1130 0.8678 19 35 -2.1006 -12.7648 0.7859 20 6 -0.4034 -10.6949 -0.1923 21 7 0.2402 -9.5436 -0.1460 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.6522 -8.4609 2.8779 34 1 -1.8910 -10.6118 2.8375 35 1 -0.3196 -11.3174 -1.0708 36 1 0.9039 -7.2992 -1.1706 37 1 2.2783 -8.2030 -0.4895 38 1 2.9469 -5.9105 -1.2002 39 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058506747.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = 55.638606 kcal Electronic energy + Delta-G solvation = -20817.969394 eV Core-core repulsion = 17613.920664 eV Total energy + Delta-G solvation = -3204.048730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98742 -38.79296 -35.82349 -33.29488 -32.99430 -31.98601 -30.84101 -30.24583 -28.74415 -26.25946 -24.64548 -23.79475 -22.89777 -22.27480 -20.40242 -19.65116 -17.92234 -16.95191 -16.39584 -15.94724 -15.40471 -14.94384 -14.79452 -14.56275 -14.43331 -14.06570 -14.00290 -13.67318 -13.36865 -12.68140 -12.47804 -12.19648 -11.92339 -11.55153 -11.34634 -11.17322 -11.03054 -10.94706 -10.80501 -10.70303 -10.55348 -10.14797 -9.95393 -9.82240 -9.72828 -9.37813 -9.16302 -8.35494 -8.27266 -7.81362 -6.01888 -4.04336 0.61528 0.88692 1.26596 3.15672 3.32152 3.36706 3.38938 3.51874 4.11351 4.29788 4.45473 4.49664 4.62517 4.67693 4.94978 5.15720 5.23511 5.32414 5.34217 5.42256 5.46138 5.51997 5.54554 5.66151 5.87823 5.96844 6.05428 6.13404 6.15147 6.30160 6.42434 6.58857 6.91431 6.92203 7.41677 7.48273 7.62499 7.74317 7.85203 8.04340 8.40493 9.02463 9.59404 11.09407 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.042904 B = 0.001917 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.463309 B =14600.684974 C =14905.479582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.056 3.944 13 C 0.063 3.937 14 N -0.477 5.477 15 C 0.336 3.664 16 C -0.184 4.184 17 C -0.024 4.024 18 C -0.184 4.184 19 Br -0.044 7.044 20 C 0.164 3.836 21 N -0.512 5.512 22 C 0.071 3.929 23 C 0.051 3.949 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 -27.308 3.593 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.073 4.073 13 C -0.062 4.062 14 N -0.194 5.194 15 C 0.104 3.896 16 C -0.207 4.207 17 C -0.051 4.051 18 C -0.267 4.267 19 Br 0.040 6.960 20 C 0.004 3.996 21 N -0.227 5.227 22 C -0.056 4.056 23 C -0.078 4.078 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.142 -27.412 2.851 27.870 hybrid contribution 0.325 0.977 0.887 1.359 sum -3.817 -26.435 3.737 26.969 Atomic orbital electron populations 1.69958 1.06020 1.26723 1.50534 1.24991 0.94843 0.99189 0.95269 0.86651 0.79572 0.83111 0.78606 1.20227 1.21283 1.20286 1.21149 0.92959 0.91037 1.51045 0.92829 1.19090 0.93958 0.90112 0.97726 1.22337 0.96754 0.88008 0.99181 1.62296 1.27863 1.02776 1.33653 1.22202 0.97770 0.96030 0.91270 1.22451 0.93625 0.88222 1.01896 1.59292 1.24202 1.00357 1.35537 1.20125 0.88432 0.92034 0.89040 1.21631 1.00680 0.98502 0.99909 1.21389 0.95389 0.92031 0.96305 1.22690 1.07010 0.96655 1.00318 1.96711 1.75714 1.24729 1.98876 1.22593 0.89296 0.91410 0.96325 1.67835 1.23579 1.05817 1.25449 1.22116 0.97207 0.97744 0.88513 1.22230 0.94252 0.90021 1.01252 0.92925 0.96543 0.95725 0.91915 0.95991 0.94257 0.88303 0.92322 0.89653 0.83633 0.83805 0.81980 0.92055 0.89647 0.89969 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.72 4.91 -27.88 -0.14 0.59 16 10 C 0.06 1.31 4.90 -3.83 -0.02 1.29 16 11 N -0.54 -9.55 4.71 -234.47 -1.10 -10.66 16 12 C 0.06 0.89 5.41 -3.77 -0.02 0.87 16 13 C 0.06 0.84 5.37 -3.76 -0.02 0.82 16 14 N -0.48 -6.27 4.73 -173.03 -0.82 -7.09 16 15 C 0.34 4.11 6.40 -154.99 -0.99 3.12 16 16 C -0.18 -1.83 9.22 -39.23 -0.36 -2.19 16 17 C -0.02 -0.21 9.93 -39.30 -0.39 -0.60 16 18 C -0.18 -1.71 6.25 -39.37 -0.25 -1.95 16 19 Br -0.04 -0.36 33.73 -68.01 -2.29 -2.65 16 20 C 0.16 1.66 10.93 -17.54 -0.19 1.47 16 21 N -0.51 -6.30 8.71 -12.41 -0.11 -6.41 16 22 C 0.07 0.96 4.79 -3.77 -0.02 0.94 16 23 C 0.05 0.76 5.61 -3.77 -0.02 0.73 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.43 6.49 -51.93 -0.34 0.10 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.73 6.34 -51.93 -0.33 1.40 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.92 6.80 -51.93 -0.35 0.57 16 33 H 0.15 1.22 7.19 -52.49 -0.38 0.84 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.09 1.10 7.82 -51.93 -0.41 0.69 16 38 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -30.05 335.94 -11.93 -41.98 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.56 Total: -2.61 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.83 Total: -8.26 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.30 Total: -49.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.05 -11.93 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058506747.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.616 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds