Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99762 * 2 1 4 4 C 1.38804 * 111.00127 * 236.04291 * 2 1 3 5 5 C 1.39524 * 119.89956 * 59.99877 * 4 2 1 6 6 C 1.36440 * 120.11522 * 179.97438 * 5 4 2 7 7 C 1.40438 * 119.91022 * 0.02562 * 6 5 4 8 8 C 1.46560 * 120.10402 * 179.97438 * 7 6 5 9 9 N 1.30819 * 120.00294 * 180.02562 * 8 7 6 10 10 N 1.40101 * 120.00060 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00093 * 179.97438 * 10 9 8 12 12 O 1.22010 * 119.99717 * 0.02562 * 11 10 9 13 13 C 1.40441 * 120.00038 * 180.02562 * 11 10 9 14 14 H 1.07996 * 120.00278 * 353.71248 * 13 11 10 15 15 C 1.40186 * 119.99945 * 173.71485 * 13 11 10 16 16 N 1.30615 * 120.00010 * 6.28094 * 15 13 11 17 17 Si 1.86799 * 119.99869 * 186.28710 * 15 13 11 18 18 H 1.48499 * 109.47275 * 94.98310 * 17 15 13 19 19 H 1.48500 * 109.46883 * 214.98070 * 17 15 13 20 20 H 1.48499 * 109.47051 * 334.97862 * 17 15 13 21 21 C 1.40379 * 119.79815 * 0.02562 * 7 6 5 22 22 C 1.36531 * 119.88198 * 359.73957 * 21 7 6 23 23 Br 1.89106 * 119.95004 * 180.25295 * 22 21 7 24 24 H 1.09007 * 109.47368 * 183.95459 * 1 2 3 25 25 H 1.09001 * 109.47079 * 63.95920 * 1 2 3 26 26 H 1.09000 * 109.47406 * 303.95427 * 1 2 3 27 27 H 1.08993 * 109.47592 * 60.00178 * 3 2 1 28 28 H 1.08998 * 109.46996 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47135 * 299.99704 * 3 2 1 30 30 H 1.07997 * 119.94145 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.04772 * 180.02562 * 6 5 4 32 32 H 1.08006 * 119.99856 * 359.97438 * 8 7 6 33 33 H 0.97002 * 120.00195 * 0.02562 * 10 9 8 34 34 H 0.96999 * 120.00502 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.05878 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9664 -0.7238 -1.0748 5 6 1.6511 -0.3387 -2.3783 6 6 2.1381 -1.0467 -3.4381 7 6 2.9577 -2.1652 -3.2157 8 6 3.4827 -2.9292 -4.3510 9 7 4.2456 -3.9710 -4.1416 10 7 4.7470 -4.7016 -5.2269 11 6 5.5334 -5.7747 -5.0112 12 8 5.8083 -6.1101 -3.8707 13 6 6.0365 -6.5066 -6.0991 14 1 5.7130 -6.2734 -7.1027 15 6 6.9585 -7.5401 -5.8822 16 7 7.2568 -7.9042 -4.6638 17 14 7.7606 -8.3964 -7.3358 18 1 9.0734 -7.7635 -7.6204 19 1 7.9625 -9.8321 -7.0146 20 1 6.8833 -8.2745 -8.5277 21 6 3.2718 -2.5500 -1.9028 22 6 2.7838 -1.8327 -0.8485 23 35 3.2115 -2.3451 0.9208 24 1 -0.3634 -1.0253 0.0709 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3634 0.5740 0.8524 27 1 1.6459 1.8948 0.8899 28 1 3.0849 1.3424 -0.0005 29 1 1.6458 1.8948 -0.8901 30 1 1.0211 0.5217 -2.5486 31 1 1.8936 -0.7474 -4.4465 32 1 3.2390 -2.6324 -5.3605 33 1 4.5288 -4.4346 -6.1335 34 1 7.8945 -8.6195 -4.5137 35 1 3.9021 -3.4092 -1.7270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059465365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = 46.266344 kcal Electronic energy + Delta-G solvation = -19989.484589 eV Core-core repulsion = 16649.196352 eV Total energy + Delta-G solvation = -3340.288237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.03673 -37.77976 -36.93013 -35.00752 -32.72514 -32.36742 -31.40547 -29.36104 -28.87191 -27.81334 -26.68542 -25.03589 -22.34415 -22.17346 -20.46180 -19.72275 -17.75149 -16.98001 -16.56661 -15.66572 -15.32499 -15.27291 -15.09789 -14.25485 -13.97227 -13.90070 -13.46823 -13.35023 -12.92721 -12.71659 -12.53147 -12.49347 -11.92429 -11.71317 -11.48612 -11.45834 -11.25829 -11.06260 -10.69678 -10.55085 -10.40134 -9.91984 -9.61492 -9.13286 -8.88073 -8.71658 -8.64457 -7.81707 -7.34202 -6.45213 -4.99956 0.78576 1.28817 1.86608 2.64479 3.02581 3.08448 3.12856 3.62020 3.65716 3.80788 4.04025 4.40205 4.73148 4.88412 4.98450 5.06809 5.07918 5.22051 5.27677 5.38678 5.53223 5.64766 5.65403 5.70009 5.73080 5.85671 6.18234 6.20176 6.33972 6.63715 6.66044 6.72823 7.16639 7.16922 7.77553 7.93503 8.56466 8.71744 9.22263 10.34113 10.58275 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.002677 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.951949 B =10458.868270 C =11526.212447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.505 5.505 3 C 0.031 3.969 4 C 0.100 3.900 5 C -0.143 4.143 6 C -0.088 4.088 7 C -0.009 4.009 8 C 0.006 3.994 9 N -0.178 5.178 10 N -0.584 5.584 11 C 0.555 3.445 12 O -0.551 6.551 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.741 5.741 17 Si 0.918 3.082 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.064 4.064 22 C -0.063 4.063 23 Br -0.040 7.040 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.370 0.630 34 H 0.275 0.725 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 17.318 6.194 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.225 5.225 3 C -0.116 4.116 4 C 0.003 3.997 5 C -0.164 4.164 6 C -0.110 4.110 7 C -0.012 4.012 8 C -0.202 4.202 9 N 0.012 4.988 10 N -0.330 5.330 11 C 0.364 3.636 12 O -0.431 6.431 13 C -0.572 4.572 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.368 5.368 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.087 4.087 22 C -0.143 4.143 23 Br 0.046 6.954 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.157 15.790 8.826 21.253 hybrid contribution -0.458 0.714 -3.132 3.245 sum -11.615 16.504 5.694 20.970 Atomic orbital electron populations 1.22444 0.85648 1.02872 1.00709 1.59273 1.08517 1.14120 1.40631 1.22432 1.01149 0.87162 1.00837 1.18562 0.97458 0.94505 0.89196 1.21152 1.02024 1.00923 0.92331 1.20941 0.96585 0.94234 0.99218 1.18579 0.96703 0.94436 0.91491 1.23832 1.02794 0.97100 0.96463 1.74862 1.03019 1.02105 1.18851 1.48189 1.51695 1.30047 1.03041 1.16780 0.77849 0.77813 0.91114 1.90747 1.60011 1.68222 1.24084 1.19688 1.26825 1.16983 0.93730 0.91003 1.25773 0.95423 0.95797 0.96636 1.70017 1.24136 1.21483 1.21208 0.86189 0.79808 0.78611 0.81256 1.19450 1.20071 1.18604 1.21307 0.97838 0.99183 0.90354 1.21499 1.02621 0.98283 0.91924 1.96666 1.92757 1.90881 1.15102 0.91015 0.95090 0.90872 0.90830 0.91043 0.95152 0.85666 0.85208 0.87218 0.79419 0.91373 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.33 60.06 0.56 0.81 16 2 N -0.50 -5.31 4.22 -186.72 -0.79 -6.10 16 3 C 0.03 0.26 9.32 60.06 0.56 0.82 16 4 C 0.10 1.23 4.71 -83.72 -0.39 0.84 16 5 C -0.14 -1.54 8.53 -39.75 -0.34 -1.88 16 6 C -0.09 -1.01 9.75 -39.40 -0.38 -1.39 16 7 C -0.01 -0.13 5.88 -104.91 -0.62 -0.75 16 8 C 0.01 0.10 10.75 -14.63 -0.16 -0.05 16 9 N -0.18 -3.90 10.19 32.11 0.33 -3.58 16 10 N -0.58 -13.68 6.26 28.87 0.18 -13.50 16 11 C 0.56 15.96 7.64 -15.43 -0.12 15.84 16 12 O -0.55 -18.26 15.22 4.91 0.07 -18.19 16 13 C -0.54 -14.62 9.24 -38.02 -0.35 -14.97 16 14 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 15 C 0.09 2.35 5.49 -17.34 -0.10 2.26 16 16 N -0.74 -21.53 11.73 55.56 0.65 -20.88 16 17 Si 0.92 19.12 29.56 -169.99 -5.03 14.10 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 21 C -0.06 -1.05 9.26 -39.39 -0.36 -1.41 16 22 C -0.06 -0.91 6.21 -39.69 -0.25 -1.16 16 23 Br -0.04 -0.57 33.06 -68.01 -2.25 -2.81 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.23 7.09 -51.93 -0.37 -0.14 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.03 0.22 7.44 -51.92 -0.39 -0.16 16 30 H 0.13 1.04 7.01 -52.49 -0.37 0.67 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.11 1.48 8.03 -52.48 -0.42 1.06 16 33 H 0.37 7.21 8.62 -182.60 -1.57 5.63 16 34 H 0.28 7.14 8.29 -40.82 -0.34 6.80 16 35 H 0.15 2.82 7.54 -52.49 -0.40 2.42 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -34.24 330.14 -8.97 -43.21 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.17 Total: 3.81 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.95 Total: -1.04 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.37 Total: -44.05 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.07 Total: -18.19 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.25 Total: -2.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.24 -8.97 -43.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.475 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds