Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21562 * 119.99827 * 0.02562 * 13 12 2 15 15 C 1.47841 * 120.00511 * 180.02562 * 13 12 2 16 16 C 1.39573 * 120.14405 * 359.72449 * 15 13 12 17 17 C 1.37962 * 119.85360 * 179.74337 * 16 15 13 18 18 C 1.38355 * 120.14162 * 0.53481 * 17 16 15 19 19 S 1.76208 * 119.85179 * 179.71773 * 18 17 16 20 20 O 1.42099 * 106.39979 * 23.56417 * 19 18 17 21 21 O 1.42101 * 106.40204 * 156.48432 * 19 18 17 22 22 N 1.65602 * 107.21732 * 270.02473 * 19 18 17 23 23 C 1.46498 * 120.00154 * 65.00152 * 22 19 18 24 24 C 1.52996 * 117.49669 * 213.62163 * 23 22 19 25 25 C 1.52996 * 117.50055 * 144.99720 * 23 22 19 26 26 C 1.38358 * 120.29630 * 359.74443 * 18 17 16 27 27 C 1.37958 * 120.14200 * 359.97438 * 26 18 17 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 32 32 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 33 33 H 1.08003 * 120.07246 * 0.02562 * 16 15 13 34 34 H 1.07994 * 119.92901 * 180.27549 * 17 16 15 35 35 H 0.97003 * 119.99524 * 244.99849 * 22 19 18 36 36 H 1.08996 * 115.54826 * 359.32516 * 23 22 19 37 37 H 1.09001 * 117.50447 * 359.97438 * 24 23 22 38 38 H 1.09000 * 117.49800 * 145.02048 * 24 23 22 39 39 H 1.08997 * 117.50177 * 214.97844 * 25 23 22 40 40 H 1.09006 * 117.49926 * 359.97438 * 25 23 22 41 41 H 1.07999 * 119.92780 * 180.02562 * 26 18 17 42 42 H 1.08005 * 120.07246 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8583 1.1614 -2.4116 15 6 2.6393 -0.7151 -3.5645 16 6 2.9771 -2.0680 -3.5040 17 6 3.4309 -2.7137 -4.6356 18 6 3.5618 -2.0205 -5.8258 19 16 4.1491 -2.8510 -7.2646 20 8 3.8737 -4.2316 -7.0714 21 8 3.6693 -2.1112 -8.3789 22 7 5.7982 -2.7006 -7.2785 23 6 6.6001 -3.3299 -6.2263 24 6 7.8757 -2.6099 -5.7843 25 6 7.9691 -3.8882 -6.6199 26 6 3.2341 -0.6778 -5.8911 27 6 2.7738 -0.0217 -4.7683 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7006 1.1552 3.4844 32 1 2.2490 -1.6317 -1.1528 33 1 2.8792 -2.6092 -2.5746 34 1 3.6884 -3.7616 -4.5913 35 1 6.2332 -2.1959 -7.9835 36 1 6.0366 -3.8692 -5.4649 37 1 8.1185 -1.6682 -6.2766 38 1 8.1516 -2.6754 -4.7318 39 1 8.3065 -4.7945 -6.1172 40 1 8.2731 -3.7877 -7.6619 41 1 3.3382 -0.1426 -6.8233 42 1 2.5179 1.0264 -4.8207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -58.572778 kcal Electronic energy + Delta-G solvation = -26366.862519 eV Core-core repulsion = 22439.758514 eV Total energy + Delta-G solvation = -3927.104004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.98123 -38.24579 -38.10713 -37.47182 -36.15848 -34.98565 -32.75230 -32.56071 -31.57812 -31.22190 -28.83006 -25.36418 -24.49219 -23.03883 -22.77948 -22.45521 -21.31712 -20.14100 -19.63454 -18.60574 -18.06961 -17.44682 -16.85247 -16.09026 -15.90466 -15.36987 -15.09021 -15.05709 -14.65608 -14.46201 -14.30562 -13.82509 -13.67951 -13.34334 -13.02107 -12.84543 -12.60475 -12.51590 -12.46562 -12.36112 -12.29952 -11.94915 -11.80450 -11.42663 -11.17846 -11.16841 -11.04995 -10.86023 -10.84747 -10.39397 -10.32346 -9.58859 -9.46503 -9.36500 -9.26272 -9.13863 -8.65037 -8.08855 -6.20719 -4.30825 -0.00820 0.36430 1.11110 2.51229 2.91766 3.18437 3.26336 3.28584 3.33330 3.50003 3.79455 3.87951 3.99734 4.28533 4.34695 4.43397 4.50631 4.51734 4.63799 4.66988 5.00732 5.11113 5.12352 5.24757 5.24945 5.41422 5.48887 5.67567 5.68428 5.73867 5.82797 5.92289 6.17397 6.46314 6.56483 6.72959 6.85935 7.03765 7.27757 7.42678 7.58806 7.79924 8.04556 8.46479 8.64704 8.89603 9.36746 10.85321 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002583 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.902994 B =10839.476177 C =11806.375124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.533 3.467 14 O -0.542 6.542 15 C -0.059 4.059 16 C -0.111 4.111 17 C -0.029 4.029 18 C -0.668 4.668 19 S 2.701 3.299 20 O -0.952 6.952 21 O -0.956 6.956 22 N -1.088 6.088 23 C 0.081 3.919 24 C -0.188 4.188 25 C -0.185 4.185 26 C -0.026 4.026 27 C -0.088 4.088 28 H 0.015 0.985 29 H 0.028 0.972 30 H 0.093 0.907 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.419 0.581 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.116 -8.856 -18.386 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.318 3.682 14 O -0.421 6.421 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.756 4.756 19 S 2.791 3.209 20 O -0.942 6.942 21 O -0.947 6.947 22 N -0.844 5.844 23 C -0.027 4.027 24 C -0.227 4.227 25 C -0.225 4.225 26 C -0.046 4.046 27 C -0.108 4.108 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.254 0.746 36 H 0.155 0.845 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.178 -8.419 -18.697 23.354 hybrid contribution 0.629 -0.210 1.328 1.484 sum 11.807 -8.628 -17.369 22.706 Atomic orbital electron populations 1.22094 0.98149 0.99322 1.01128 1.18852 0.91235 0.94090 0.79656 0.93068 1.21219 1.32631 1.13435 0.90206 0.91939 1.24889 0.94704 0.94939 0.99125 1.69903 1.35640 1.22435 1.23945 0.86366 0.78621 0.79518 0.82429 1.19698 1.20810 1.20806 1.46564 1.63774 1.13646 1.10345 1.18236 0.79597 0.86975 0.83428 1.90756 1.51058 1.15392 1.84915 1.20772 0.96136 0.94161 0.95210 1.21541 0.98437 0.93884 0.99186 1.20829 0.93827 0.99474 0.90721 1.30907 1.18743 1.06952 1.18954 1.01722 0.71806 0.73919 0.73467 1.93604 1.83171 1.31144 1.86292 1.93607 1.78308 1.73453 1.49284 1.55142 1.25275 1.67518 1.36446 1.21350 0.87781 1.00858 0.92694 1.23435 1.01001 0.96874 1.01429 1.23384 0.99447 0.98253 1.01390 1.20861 0.92944 0.91867 0.98904 1.21448 0.97017 1.01219 0.91068 0.96543 0.95316 0.88889 0.92498 0.77670 0.84238 0.83882 0.74626 0.84454 0.88171 0.87637 0.87710 0.88263 0.83846 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.51 2.56 -69.08 -0.18 6.33 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.29 11.31 55.43 0.63 -23.67 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.70 -14.02 5.02 -55.88 -0.28 -14.30 16 13 C 0.53 10.49 7.74 -12.33 -0.10 10.39 16 14 O -0.54 -12.64 16.01 5.31 0.09 -12.56 16 15 C -0.06 -0.90 5.87 -104.97 -0.62 -1.52 16 16 C -0.11 -1.37 9.54 -39.18 -0.37 -1.74 16 17 C -0.03 -0.31 9.50 -39.64 -0.38 -0.69 16 18 C -0.67 -7.12 5.95 -39.49 -0.24 -7.36 16 19 S 2.70 26.11 5.71 -107.50 -0.61 25.50 16 20 O -0.95 -11.55 17.03 -57.17 -0.97 -12.52 16 21 O -0.96 -11.56 17.27 -57.17 -0.99 -12.55 16 22 N -1.09 -7.32 6.04 -4.90 -0.03 -7.35 16 23 C 0.08 0.52 6.47 -67.94 -0.44 0.08 16 24 C -0.19 -1.03 10.46 -26.73 -0.28 -1.31 16 25 C -0.19 -0.97 10.46 -26.73 -0.28 -1.25 16 26 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 27 C -0.09 -1.20 9.60 -39.19 -0.38 -1.57 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 6.63 6.57 -40.82 -0.27 6.36 16 33 H 0.14 1.48 6.41 -52.48 -0.34 1.14 16 34 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 35 H 0.42 2.00 8.96 -34.47 -0.31 1.69 16 36 H 0.14 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.14 1.31 7.60 -52.49 -0.40 0.91 16 42 H 0.15 1.97 7.65 -52.48 -0.40 1.57 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -34.28 371.63 -10.59 -44.87 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.32 Total: 6.91 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -3.68 Total: -15.00 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.32 Total: -45.32 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.88 Total: -37.62 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 26.11 SS G_CDS: -0.61 Total: 25.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.28 -10.59 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.706 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds