Wall clock time and date at job start Tue Mar 31 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47771 * 2 1 4 4 C 1.50704 * 109.47302 * 239.99613 * 2 1 3 5 5 H 1.07995 * 120.00032 * 240.00667 * 4 2 1 6 6 C 1.37878 * 119.99541 * 59.99982 * 4 2 1 7 7 N 1.31511 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99446 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47315 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47216 * 120.00409 * 8 6 4 11 11 H 1.48503 * 109.47044 * 240.00016 * 8 6 4 12 12 N 1.46503 * 109.47268 * 120.00107 * 2 1 3 13 13 C 1.34785 * 119.99706 * 274.99899 * 12 2 1 14 14 O 1.21277 * 119.99911 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00087 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47495 * 180.02562 * 16 15 13 18 18 N 1.46494 * 109.47577 * 180.02562 * 17 16 15 19 19 C 1.34009 * 124.22468 * 89.97296 * 18 17 16 20 20 O 1.21541 * 123.81505 * 359.94235 * 19 18 17 21 21 N 1.34980 * 112.36947 * 179.97438 * 19 18 17 22 22 C 1.45939 * 105.99523 * 0.02562 * 21 19 18 23 23 C 1.53571 * 112.01135 * 238.41429 * 22 21 19 24 24 C 1.54499 * 104.08611 * 275.02034 * 23 22 21 25 25 C 1.53977 * 106.66178 * 337.67240 * 24 23 22 26 26 C 1.53571 * 112.01079 * 121.58181 * 22 21 19 27 27 C 1.35208 * 124.22026 * 269.95733 * 18 17 16 28 28 O 1.21235 * 127.46858 * 0.03162 * 27 18 17 29 29 H 1.09000 * 109.47771 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47452 * 300.00499 * 1 2 3 31 31 H 1.09005 * 109.46912 * 59.99782 * 1 2 3 32 32 H 0.97003 * 119.99306 * 179.97438 * 7 6 4 33 33 H 0.96996 * 120.00183 * 94.99487 * 12 2 1 34 34 H 1.09000 * 109.46880 * 59.99699 * 15 13 12 35 35 H 1.09000 * 109.47077 * 300.00289 * 15 13 12 36 36 H 1.09008 * 109.47108 * 60.00328 * 16 15 13 37 37 H 1.09000 * 109.47341 * 300.00229 * 16 15 13 38 38 H 1.09000 * 109.46886 * 59.99718 * 17 16 15 39 39 H 1.09000 * 109.46943 * 300.00387 * 17 16 15 40 40 H 0.97002 * 127.00288 * 180.02562 * 21 19 18 41 41 H 1.08999 * 110.50635 * 156.36822 * 23 22 21 42 42 H 1.08999 * 110.50963 * 33.67130 * 23 22 21 43 43 H 1.08999 * 110.02012 * 218.37913 * 24 23 22 44 44 H 1.08993 * 110.02517 * 96.97182 * 24 23 22 45 45 H 1.08997 * 110.01708 * 119.30557 * 25 24 23 46 46 H 1.09001 * 110.01783 * 240.70100 * 25 24 23 47 47 H 1.09000 * 110.51149 * 326.32653 * 26 22 21 48 48 H 1.09003 * 110.50881 * 203.63378 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 3.1464 -2.2872 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1466 -0.1876 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6488 -0.7287 3.5878 16 6 2.7010 0.2546 4.7587 17 6 3.2111 -0.4665 6.0080 18 7 3.2605 0.4748 7.1294 19 6 2.2451 0.6920 7.9765 20 8 1.1705 0.1288 7.9028 21 7 2.5504 1.6073 8.9204 22 6 3.9212 2.0261 8.6461 23 6 4.8505 1.7736 9.8423 24 6 4.6671 3.0237 10.7314 25 6 4.1415 4.1440 9.8150 26 6 4.0223 3.5384 8.3987 27 6 4.3365 1.2328 7.4390 28 8 5.4048 1.2657 6.8667 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1616 -3.4845 33 1 2.2489 -1.6318 1.1526 34 1 3.6479 -1.1212 3.3986 35 1 1.9759 -1.5505 3.8326 36 1 1.7020 0.6476 4.9481 37 1 3.3742 1.0761 4.5136 38 1 4.2101 -0.8592 5.8184 39 1 2.5383 -1.2883 6.2533 40 1 1.9757 1.9225 9.6355 41 1 5.8854 1.6893 9.5107 42 1 4.5463 0.8752 10.3793 43 1 5.6228 3.3155 11.1668 44 1 3.9444 2.8175 11.5208 45 1 3.1641 4.4807 10.1603 46 1 4.8426 4.9786 9.8063 47 1 3.1246 3.9049 7.9009 48 1 4.9089 3.7703 7.8084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:16 Heat of formation + Delta-G solvation = -101.464670 kcal Electronic energy + Delta-G solvation = -29240.870008 eV Core-core repulsion = 25102.704957 eV Total energy + Delta-G solvation = -4138.165051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94963 -39.05019 -38.90304 -38.30252 -36.13493 -35.11025 -34.56736 -32.61744 -32.25800 -29.49944 -29.25538 -28.83221 -27.13147 -25.23092 -23.92262 -23.14237 -21.27789 -21.09702 -20.78893 -20.55892 -19.33148 -18.28434 -17.18495 -16.85636 -16.73223 -16.41100 -15.89320 -15.58071 -15.50972 -15.34601 -15.07815 -15.03245 -14.45299 -14.08351 -14.08055 -13.64257 -13.16995 -13.05936 -12.67940 -12.40388 -12.24679 -12.22517 -12.04087 -11.86373 -11.77305 -11.68052 -11.58085 -11.08605 -11.02543 -11.00554 -10.93755 -10.78501 -10.66459 -10.38505 -10.28122 -10.22041 -9.99639 -9.76617 -9.02260 -8.96231 -8.53197 -7.86633 -6.10473 -4.19569 1.29963 1.93296 2.73422 2.78690 3.24788 3.32397 3.35211 3.45687 3.52559 3.89026 3.92549 4.11637 4.39397 4.46586 4.57733 4.72247 4.78263 4.83571 4.97608 5.00460 5.02229 5.10013 5.20759 5.22015 5.25420 5.34808 5.39025 5.47228 5.52110 5.56917 5.58919 5.64921 5.73886 5.90214 6.12121 6.32896 6.45322 6.77815 6.85738 7.00328 7.09937 7.18686 7.50437 7.59764 7.72368 7.85209 7.94680 8.17795 8.71163 8.81079 9.18201 9.48217 10.95562 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.001978 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.572659 B =14153.427361 C =14318.930743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.500 3.500 14 O -0.557 6.557 15 C -0.138 4.138 16 C -0.118 4.118 17 C 0.117 3.883 18 N -0.576 5.576 19 C 0.702 3.298 20 O -0.536 6.536 21 N -0.714 5.714 22 C 0.111 3.889 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.119 4.119 27 C 0.536 3.464 28 O -0.458 6.458 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.389 0.611 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.439 0.561 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 1.375 28.641 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.436 6.436 15 C -0.179 4.179 16 C -0.157 4.157 17 C -0.004 4.004 18 N -0.322 5.322 19 C 0.403 3.597 20 O -0.409 6.409 21 N -0.378 5.378 22 C 0.019 3.981 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.158 4.158 27 C 0.322 3.678 28 O -0.326 6.326 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.221 0.779 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.284 0.716 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.543 1.977 28.050 29.114 hybrid contribution 0.068 -0.789 -0.671 1.038 sum 7.611 1.188 27.380 28.443 Atomic orbital electron populations 1.22071 0.98516 0.99072 1.00865 1.18734 0.91013 0.93988 0.80155 0.93466 1.21265 1.32292 1.13155 0.90344 0.92023 1.24909 0.94859 0.94988 0.99108 1.69920 1.35981 1.22484 1.23724 0.86387 0.78576 0.79512 0.82567 1.19741 1.20896 1.20901 1.46529 1.65135 1.13537 1.10621 1.20371 0.78712 0.87560 0.84830 1.90653 1.51443 1.16266 1.85262 1.21559 1.03142 0.99379 0.93843 1.21629 1.03411 0.98624 0.92001 1.21833 1.03948 0.90875 0.83735 1.46599 1.14882 1.41011 1.29688 1.16056 0.83547 0.80403 0.79697 1.91034 1.22428 1.53059 1.74352 1.45294 1.15039 1.44291 1.33195 1.21395 0.84318 0.97203 0.95169 1.22487 0.99517 0.99666 0.93875 1.22212 1.02049 0.93894 0.97894 1.22214 1.01951 0.98383 0.93531 1.22509 1.04453 0.89936 0.98873 1.20400 0.83548 0.79293 0.84530 1.90816 1.22304 1.63906 1.55618 0.95495 0.96685 0.89201 0.92659 0.77913 0.89105 0.89085 0.90398 0.90647 0.88589 0.88398 0.71614 0.88934 0.89992 0.90731 0.91226 0.91174 0.90675 0.89714 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.71 -14.98 5.07 -54.93 -0.28 -15.26 16 13 C 0.50 10.05 7.79 -10.98 -0.09 9.96 16 14 O -0.56 -13.60 15.64 5.56 0.09 -13.52 16 15 C -0.14 -1.91 5.70 -27.89 -0.16 -2.06 16 16 C -0.12 -1.63 4.83 -26.73 -0.13 -1.76 16 17 C 0.12 1.27 5.72 -4.05 -0.02 1.25 16 18 N -0.58 -6.43 2.62 -120.93 -0.32 -6.75 16 19 C 0.70 8.02 8.64 -87.42 -0.76 7.27 16 20 O -0.54 -7.97 17.49 5.33 0.09 -7.87 16 21 N -0.71 -5.39 6.03 -53.62 -0.32 -5.72 16 22 C 0.11 0.81 1.04 -132.88 -0.14 0.67 16 23 C -0.12 -0.61 6.02 -25.65 -0.15 -0.76 16 24 C -0.12 -0.44 6.82 -25.44 -0.17 -0.61 16 25 C -0.12 -0.50 6.82 -25.44 -0.17 -0.68 16 26 C -0.12 -0.76 6.03 -25.65 -0.15 -0.91 16 27 C 0.54 5.69 7.02 -10.99 -0.08 5.61 16 28 O -0.46 -5.93 17.80 5.60 0.10 -5.83 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.24 8.10 -51.92 -0.42 0.82 16 37 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 39 H 0.10 0.98 7.87 -51.93 -0.41 0.57 16 40 H 0.44 2.29 8.96 -40.82 -0.37 1.93 16 41 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -35.03 395.96 -9.01 -44.05 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.70 Total: 5.44 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.25 Total: 8.30 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.29 Total: -52.38 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.28 Total: -27.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.03 -9.01 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.419 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds