Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86793 * 120.00084 * 2 1 4 4 H 1.48504 * 109.47020 * 274.98015 * 3 2 1 5 5 H 1.48503 * 109.47546 * 34.97759 * 3 2 1 6 6 H 1.48499 * 109.47263 * 154.98105 * 3 2 1 7 7 C 1.38541 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99655 * 185.94332 * 7 2 1 9 9 N 1.36932 * 120.00044 * 5.94270 * 7 2 1 10 10 N 1.40182 * 126.21643 * 354.08650 * 9 7 2 11 11 C 1.31994 * 107.73723 * 179.97438 * 10 9 7 12 12 C 1.41200 * 131.95004 * 180.02562 * 11 10 9 13 13 C 1.35991 * 119.35655 * 179.97438 * 12 11 10 14 14 C 1.40654 * 119.76073 * 359.97438 * 13 12 11 15 15 S 1.76197 * 119.75719 * 180.02562 * 14 13 12 16 16 O 1.42099 * 106.40275 * 203.54270 * 15 14 13 17 17 O 1.42101 * 106.40273 * 336.46528 * 15 14 13 18 18 N 1.65599 * 107.21651 * 90.00601 * 15 14 13 19 19 C 1.47025 * 125.64742 * 269.69188 * 18 15 14 20 20 C 1.54310 * 107.27804 * 180.96816 * 19 18 15 21 21 C 1.55156 * 102.86504 * 22.52470 * 20 19 18 22 22 C 1.47426 * 125.65200 * 89.99604 * 18 15 14 23 23 C 1.34789 * 120.48925 * 0.02822 * 14 13 12 24 24 N 1.37203 * 120.67928 * 359.95019 * 23 14 13 25 25 C 1.34801 * 126.21693 * 174.09299 * 9 7 2 26 26 O 1.21707 * 125.98604 * 359.73099 * 25 9 7 27 27 H 0.97006 * 120.00106 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.32055 * 359.97438 * 12 11 10 29 29 H 1.08000 * 120.12448 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.88268 * 300.51425 * 19 18 15 31 31 H 1.09000 * 109.88273 * 61.67510 * 19 18 15 32 32 H 1.09000 * 110.92945 * 264.11001 * 20 19 18 33 33 H 1.09007 * 110.59429 * 140.78408 * 20 19 18 34 34 H 1.08997 * 111.00862 * 206.22769 * 21 20 19 35 35 H 1.08999 * 111.03474 * 82.39093 * 21 20 19 36 36 H 1.08996 * 110.36831 * 274.67631 * 22 18 15 37 37 H 1.09002 * 110.36241 * 36.89422 * 22 18 15 38 38 H 1.07994 * 119.66181 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5963 1.4120 0.5921 7 6 2.0087 -1.1998 0.0005 8 1 3.0843 -1.2022 0.0974 9 7 1.3296 -2.3825 -0.1217 10 7 -0.0633 -2.5399 -0.1382 11 6 -0.3209 -3.8276 -0.2718 12 6 -1.5351 -4.5444 -0.3468 13 6 -1.5033 -5.8967 -0.4874 14 6 -0.2663 -6.5625 -0.5568 15 16 -0.2253 -8.3145 -0.7396 16 8 1.0333 -8.7411 -0.2365 17 8 -1.4655 -8.7990 -0.2431 18 7 -0.2135 -8.6377 -2.3637 19 6 -1.4017 -8.8388 -3.2060 20 6 -0.9046 -9.1351 -4.6365 21 6 0.5394 -9.6514 -4.4004 22 6 0.9902 -8.7775 -3.2033 23 6 0.8880 -5.8703 -0.4843 24 7 0.8782 -4.5057 -0.3428 25 6 1.8789 -3.6071 -0.2479 26 8 3.0696 -3.8570 -0.2780 27 1 -0.4850 0.8401 -0.0004 28 1 -2.4798 -4.0239 -0.2930 29 1 -2.4245 -6.4573 -0.5465 30 1 -1.9831 -9.6813 -2.8316 31 1 -2.0123 -7.9359 -3.2074 32 1 -0.8959 -8.2284 -5.2413 33 1 -1.5180 -9.9057 -5.1036 34 1 1.1664 -9.4712 -5.2736 35 1 0.5384 -10.7083 -4.1341 36 1 1.3254 -7.8006 -3.5517 37 1 1.7851 -9.2744 -2.6470 38 1 1.8302 -6.3952 -0.5385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065198663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = 19.402196 kcal Electronic energy + Delta-G solvation = -27217.533281 eV Core-core repulsion = 23190.270182 eV Total energy + Delta-G solvation = -4027.263099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -42.09541 -38.51225 -37.71838 -37.24624 -36.02164 -35.84139 -33.92929 -32.55793 -31.17258 -31.06291 -29.21096 -28.46124 -26.39015 -23.72290 -22.85719 -22.50664 -21.50564 -21.30272 -19.23600 -18.49450 -18.23532 -17.48964 -16.79518 -16.65255 -16.08879 -16.07342 -15.38676 -15.23230 -14.62944 -14.38677 -14.10701 -14.02673 -13.88451 -13.53300 -13.23932 -12.90881 -12.76546 -12.14058 -12.10087 -12.01665 -11.78820 -11.76828 -11.70843 -11.55883 -11.40472 -11.29436 -11.20918 -11.00654 -10.96933 -10.66969 -10.49556 -10.29340 -9.81291 -9.23175 -9.18304 -8.73729 -7.16176 -6.77794 -4.38630 0.32963 0.93547 1.71480 2.58745 2.92660 2.97194 3.03146 3.09577 3.55257 3.69016 3.78968 3.89651 4.06504 4.20919 4.31990 4.55560 4.67300 4.72838 4.81538 5.03207 5.06350 5.22372 5.31629 5.40274 5.49975 5.59493 5.59949 5.61923 5.65750 5.70724 5.87417 5.99645 6.09468 6.24341 6.34167 6.64959 6.76759 6.93589 7.15037 7.66775 8.05464 8.51882 8.86585 9.28098 10.21151 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.003161 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.179087 B = 8857.078624 C = 9018.243655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.040 3.960 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.292 4.292 8 H 0.130 0.870 9 N -0.215 5.215 10 N -0.193 5.193 11 C 0.167 3.833 12 C -0.075 4.075 13 C -0.066 4.066 14 C -0.742 4.742 15 S 2.728 3.272 16 O -0.958 6.958 17 O -0.951 6.951 18 N -1.013 6.013 19 C 0.119 3.881 20 C -0.129 4.129 21 C -0.129 4.129 22 C 0.111 3.889 23 C 0.262 3.738 24 N -0.459 5.459 25 C 0.541 3.459 26 O -0.584 6.584 27 H 0.278 0.722 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -14.411 -8.737 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.422 4.422 8 H 0.147 0.853 9 N -0.017 5.017 10 N -0.022 5.022 11 C -0.090 4.090 12 C -0.098 4.098 13 C -0.092 4.092 14 C -0.835 4.835 15 S 2.819 3.181 16 O -0.948 6.948 17 O -0.941 6.941 18 N -0.852 5.852 19 C -0.006 4.006 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.014 4.014 23 C 0.133 3.867 24 N -0.171 5.171 25 C 0.247 3.753 26 O -0.466 6.466 27 H 0.089 0.911 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.677 -13.756 -7.848 16.513 hybrid contribution 0.506 0.971 -0.241 1.122 sum -4.171 -12.784 -8.090 15.693 Atomic orbital electron populations 1.70257 1.05943 1.28565 1.36886 1.25641 0.96015 1.00361 0.95447 0.85612 0.79490 0.78974 0.79026 1.19449 1.19921 1.18495 1.19881 0.92671 0.78746 1.50857 0.85269 1.44815 1.02076 1.05144 1.49625 1.78925 0.93553 1.08401 1.21356 1.21676 0.87261 0.89576 1.10533 1.19988 0.94377 0.92897 1.02525 1.20085 0.95109 0.93721 1.00293 1.30294 0.98679 1.26600 1.27962 1.00878 0.73332 0.73077 0.70843 1.93577 1.43523 1.80670 1.77051 1.93555 1.44747 1.78662 1.77136 1.58696 1.13461 1.86371 1.26651 1.21740 0.86892 1.01576 0.90412 1.22640 0.96538 1.01904 0.95756 1.22754 0.96414 0.99861 0.97741 1.22120 0.87140 1.00283 0.91886 1.21316 0.98945 0.81571 0.84883 1.43555 1.10262 1.06522 1.56808 1.16379 0.84589 0.81918 0.92382 1.90894 1.10824 1.80629 1.64213 0.91134 0.83387 0.83855 0.90873 0.91242 0.90454 0.90135 0.89912 0.90519 0.91270 0.89616 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 11.84 55.47 0.66 -19.89 16 2 C 0.04 1.00 5.49 -17.54 -0.10 0.90 16 3 Si 0.95 18.77 29.55 -169.99 -5.02 13.75 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.29 -7.88 10.07 -15.16 -0.15 -8.04 16 8 H 0.13 3.39 7.81 -52.49 -0.41 2.98 16 9 N -0.22 -5.93 3.68 -15.44 -0.06 -5.99 16 10 N -0.19 -5.05 10.50 31.28 0.33 -4.72 16 11 C 0.17 3.75 7.86 -155.61 -1.22 2.52 16 12 C -0.08 -1.31 10.11 -39.26 -0.40 -1.71 16 13 C -0.07 -1.01 9.53 -39.48 -0.38 -1.38 16 14 C -0.74 -11.60 5.94 -39.89 -0.24 -11.84 16 15 S 2.73 37.14 5.93 -107.50 -0.64 36.50 16 16 O -0.96 -15.15 16.51 -57.17 -0.94 -16.09 16 17 O -0.95 -14.38 16.88 -57.17 -0.97 -15.34 16 18 N -1.01 -10.77 3.70 -111.42 -0.41 -11.18 16 19 C 0.12 1.01 6.98 -3.07 -0.02 0.98 16 20 C -0.13 -0.82 6.95 -24.90 -0.17 -0.99 16 21 C -0.13 -0.84 7.08 -24.58 -0.17 -1.02 16 22 C 0.11 1.00 7.11 -2.53 -0.02 0.99 16 23 C 0.26 4.82 10.36 -16.37 -0.17 4.65 16 24 N -0.46 -10.42 2.91 -66.60 -0.19 -10.61 16 25 C 0.54 14.36 8.61 -86.85 -0.75 13.61 16 26 O -0.58 -16.42 17.82 5.18 0.09 -16.33 16 27 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.14 1.74 7.65 -52.49 -0.40 1.33 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.77 7.78 -51.93 -0.40 0.37 16 38 H 0.17 2.84 7.50 -52.49 -0.39 2.45 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -34.87 340.86 -9.93 -44.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.13 Total: 1.29 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.79 Total: -1.33 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.32 Total: -52.39 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.82 Total: -47.76 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: 37.14 SS G_CDS: -0.64 Total: 36.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.87 -9.93 -44.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065198663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.200 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds