Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47245 * 2 1 4 4 H 1.09002 * 109.58684 * 305.00152 * 3 2 1 5 5 C 1.53175 * 109.58980 * 184.71140 * 3 2 1 6 6 C 1.52957 * 109.57844 * 170.25192 * 5 3 2 7 7 C 1.52338 * 108.86812 * 51.74330 * 6 5 3 8 8 C 1.33309 * 121.76190 * 341.90360 * 7 6 5 9 9 S 1.76565 * 106.53922 * 180.02562 * 8 7 6 10 10 C 1.72217 * 94.66367 * 0.02562 * 9 8 7 11 11 O 1.21828 * 127.08318 * 180.02562 * 10 9 8 12 12 N 1.33891 * 105.83340 * 359.97438 * 10 9 8 13 13 C 1.46507 * 120.92593 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46570 * 269.97570 * 13 12 10 15 15 O 1.21280 * 120.00312 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99568 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99891 * 359.97438 * 16 14 13 18 18 C 1.46498 * 119.99745 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.47721 * 89.99650 * 18 16 14 20 20 H 1.07998 * 119.99565 * 359.97438 * 19 18 16 21 21 C 1.37870 * 120.00321 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99935 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00193 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47079 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47569 * 119.99865 * 23 21 19 26 26 H 1.48507 * 109.47207 * 239.99876 * 23 21 19 27 27 C 1.50681 * 126.53903 * 359.95747 * 8 7 6 28 28 H 1.08999 * 109.47443 * 59.99812 * 1 2 3 29 29 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46746 * 300.00011 * 1 2 3 31 31 H 1.08996 * 109.47111 * 240.00304 * 2 1 3 32 32 H 1.08999 * 109.47443 * 120.00188 * 2 1 3 33 33 H 1.09004 * 109.45278 * 290.28054 * 5 3 2 34 34 H 1.08998 * 109.45424 * 50.24017 * 5 3 2 35 35 H 1.09000 * 109.56917 * 171.55571 * 6 5 3 36 36 H 1.08996 * 109.57005 * 291.92452 * 6 5 3 37 37 H 1.08995 * 109.47211 * 29.97365 * 13 12 10 38 38 H 1.08997 * 109.46848 * 149.97644 * 13 12 10 39 39 H 1.09000 * 109.46908 * 90.00847 * 17 16 14 40 40 H 1.09002 * 109.47013 * 210.00315 * 17 16 14 41 41 H 1.08995 * 109.47784 * 330.00312 * 17 16 14 42 42 H 1.09009 * 109.47103 * 209.99922 * 18 16 14 43 43 H 1.09006 * 109.47084 * 329.99203 * 18 16 14 44 44 H 0.97003 * 120.00029 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.79699 * 224.93845 * 27 8 7 46 46 H 1.08998 * 109.61458 * 104.27731 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9834 -0.8412 5 6 3.5672 1.4472 -0.1185 6 6 4.0579 2.8753 -0.3623 7 6 3.4595 3.7897 0.6991 8 6 2.3963 3.4288 1.4178 9 16 2.0488 4.7717 2.5102 10 6 3.3484 5.7509 1.9463 11 8 3.6512 6.8650 2.3354 12 7 3.9581 5.0352 0.9931 13 6 5.1249 5.5658 0.2834 14 6 4.6689 6.3209 -0.9384 15 8 3.4860 6.4070 -1.1918 16 7 5.5758 6.8998 -1.7502 17 6 7.0047 6.7953 -1.4445 18 6 5.1325 7.6343 -2.9377 19 6 4.9047 9.0800 -2.5783 20 1 5.0729 9.4178 -1.5664 21 6 4.4817 9.9714 -3.5413 22 7 4.2774 9.5601 -4.7737 23 14 4.2001 11.7635 -3.0960 24 1 4.4990 11.9685 -1.6559 25 1 5.0923 12.6232 -3.9146 26 1 2.7843 12.1234 -3.3633 27 6 1.6419 2.1287 1.3130 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.0041 1.0659 0.8044 34 1 3.8686 0.8129 -0.9521 35 1 5.1456 2.9036 -0.2975 36 1 3.7404 3.2067 -1.3509 37 1 5.6756 6.2379 0.9414 38 1 5.7717 4.7423 -0.0188 39 1 7.4145 5.9057 -1.9228 40 1 7.5217 7.6793 -1.8178 41 1 7.1411 6.7233 -0.3655 42 1 5.8970 7.5685 -3.7121 43 1 4.2030 7.2009 -3.3071 44 1 3.9801 10.1874 -5.4513 45 1 0.5693 2.3232 1.3137 46 1 1.9008 1.4866 2.1548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065515176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = -53.933092 kcal Electronic energy + Delta-G solvation = -27802.442541 eV Core-core repulsion = 24011.372823 eV Total energy + Delta-G solvation = -3791.069718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14531 -38.91697 -38.48489 -36.57519 -34.92317 -33.17164 -32.68340 -31.59336 -29.69937 -28.38898 -27.50416 -25.86964 -24.36928 -24.15797 -22.61756 -22.01650 -20.86725 -19.42866 -18.74793 -18.24459 -17.13011 -16.65037 -16.51411 -15.74187 -15.31317 -15.14931 -15.05686 -14.81826 -14.46734 -14.33183 -14.05036 -13.86992 -13.65299 -13.15124 -12.90819 -12.83037 -12.71959 -12.63134 -12.26092 -12.16169 -11.97029 -11.82760 -11.72826 -11.26646 -11.24984 -11.12415 -10.90171 -10.88801 -10.74146 -10.63313 -10.39947 -10.18891 -9.91673 -9.68224 -9.60490 -8.90825 -8.46447 -7.78506 -7.74584 -6.07698 -4.12224 1.05991 1.45916 1.81702 2.27831 2.80047 3.17295 3.29561 3.37691 3.43734 3.82034 4.25089 4.41742 4.43784 4.48942 4.59470 4.77528 4.91726 4.93072 5.01745 5.09790 5.15922 5.19519 5.27421 5.28721 5.32004 5.37226 5.49628 5.53086 5.60812 5.66805 5.73376 5.74883 5.78284 5.82652 5.89126 6.01616 6.10504 6.16505 6.21019 6.81140 6.92493 7.33783 7.41736 7.46998 7.88654 8.18103 8.23907 8.79780 8.95927 9.53289 11.00483 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003182 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.359068 B = 8797.252657 C = 9301.583474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.081 0.919 5 C -0.109 4.109 6 C -0.059 4.059 7 C 0.117 3.883 8 C -0.215 4.215 9 S -0.001 6.001 10 C 0.492 3.508 11 O -0.471 6.471 12 N -0.514 5.514 13 C 0.078 3.922 14 C 0.490 3.510 15 O -0.526 6.526 16 N -0.597 5.597 17 C 0.079 3.921 18 C 0.247 3.753 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.020 4.020 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.263 0.737 45 H 0.081 0.919 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -22.492 10.886 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.099 0.901 5 C -0.147 4.147 6 C -0.098 4.098 7 C 0.007 3.993 8 C -0.335 4.335 9 S 0.244 5.756 10 C 0.174 3.826 11 O -0.350 6.350 12 N -0.233 5.233 13 C -0.051 4.051 14 C 0.274 3.726 15 O -0.402 6.402 16 N -0.330 5.330 17 C -0.065 4.065 18 C 0.128 3.872 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.059 4.059 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.627 -21.362 11.786 24.406 hybrid contribution 0.978 1.241 -0.872 1.804 sum 0.351 -20.122 10.914 22.894 Atomic orbital electron populations 1.21831 0.95764 1.01543 1.02254 1.21550 0.96061 0.95555 1.02184 1.21357 0.95446 0.96166 0.97905 0.90093 1.21581 0.95544 0.94748 1.02786 1.20771 1.00176 0.92785 0.96110 1.20009 0.95645 0.85275 0.98414 1.23508 1.02765 1.01747 1.05447 1.84759 1.35809 1.11552 1.43454 1.21247 0.88365 0.89570 0.83421 1.90972 1.66973 1.16311 1.60763 1.45676 1.29208 1.14743 1.33670 1.21855 0.87588 1.00538 0.95155 1.20348 0.87011 0.80865 0.84329 1.90719 1.16361 1.60461 1.72664 1.48152 1.05355 1.52133 1.27359 1.21714 0.82646 1.02274 0.99888 1.19331 0.96421 0.90783 0.80678 1.21463 1.45695 0.93324 0.96134 0.92388 1.24924 0.95068 0.99207 0.94838 1.69939 1.46449 1.35211 1.01793 0.86438 0.78002 0.84411 0.78611 1.19709 1.20875 1.20796 1.20058 0.98626 0.89304 0.97958 0.92526 0.92878 0.92436 0.91659 0.91806 0.91112 0.90422 0.89860 0.88793 0.86470 0.86882 0.93324 0.90251 0.92566 0.94719 0.93835 0.92736 0.90082 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.69 37.16 0.36 -0.60 16 2 C -0.12 -0.69 5.39 -26.73 -0.14 -0.83 16 3 C -0.09 -0.68 2.22 -90.32 -0.20 -0.88 16 4 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 5 C -0.11 -0.77 5.16 -26.66 -0.14 -0.91 16 6 C -0.06 -0.57 5.50 -27.09 -0.15 -0.72 16 7 C 0.12 1.53 6.59 -81.03 -0.53 1.00 16 8 C -0.21 -2.65 6.42 -36.04 -0.23 -2.88 16 9 S 0.00 -0.02 22.96 -107.50 -2.47 -2.49 16 10 C 0.49 9.02 8.26 53.66 0.44 9.46 16 11 O -0.47 -10.18 17.50 5.07 0.09 -10.09 16 12 N -0.51 -8.23 2.10 -117.55 -0.25 -8.48 16 13 C 0.08 1.18 4.32 -5.19 -0.02 1.16 16 14 C 0.49 10.18 7.74 -10.98 -0.09 10.10 16 15 O -0.53 -13.48 16.01 5.56 0.09 -13.39 16 16 N -0.60 -12.42 2.86 -182.95 -0.52 -12.94 16 17 C 0.08 1.17 10.24 59.85 0.61 1.78 16 18 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 19 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 20 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.90 22.51 29.54 -169.99 -5.02 17.48 16 24 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.02 -0.18 5.05 -27.68 -0.14 -0.32 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 6.88 -51.93 -0.36 -0.01 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.11 -51.93 -0.42 -0.09 16 33 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 35 H 0.08 0.66 6.91 -51.93 -0.36 0.30 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 1.72 7.02 -51.93 -0.36 1.35 16 38 H 0.11 1.21 6.48 -51.93 -0.34 0.87 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 42 H 0.03 0.90 8.07 -51.92 -0.42 0.48 16 43 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 0.69 7.23 -51.93 -0.38 0.32 16 46 H 0.08 0.57 8.08 -51.93 -0.42 0.16 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -36.74 384.01 -9.34 -46.08 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -7.11 Total: -4.81 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.67 Total: 8.86 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.03 Total: -47.45 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.74 -9.34 -46.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065515176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.851 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds