Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 H 1.09003 * 109.70270 * 55.36640 * 3 2 1 5 5 C 1.53174 * 109.58617 * 175.72244 * 3 2 1 6 6 C 1.52951 * 109.57567 * 189.60473 * 5 3 2 7 7 C 1.52347 * 108.80383 * 308.04700 * 6 5 3 8 8 C 1.33301 * 121.76207 * 18.56974 * 7 6 5 9 9 S 1.76560 * 106.54033 * 179.69733 * 8 7 6 10 10 C 1.72208 * 94.66617 * 359.75866 * 9 8 7 11 11 O 1.21828 * 127.08610 * 180.02562 * 10 9 8 12 12 N 1.33898 * 105.83470 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.92839 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46723 * 90.02710 * 13 12 10 15 15 O 1.21279 * 120.00049 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99541 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00212 * 359.97438 * 16 14 13 18 18 C 1.46502 * 119.99726 * 179.97438 * 16 14 13 19 19 C 1.50691 * 109.47318 * 269.99867 * 18 16 14 20 20 H 1.08001 * 119.99896 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00413 * 179.97438 * 19 18 16 22 22 N 1.31516 * 119.99924 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47134 * 90.00496 * 23 21 19 25 25 H 1.48501 * 109.47070 * 210.00146 * 23 21 19 26 26 H 1.48493 * 109.47176 * 330.00076 * 23 21 19 27 27 C 1.50356 * 126.48475 * 359.45382 * 8 7 6 28 28 H 1.08997 * 109.47112 * 59.99650 * 1 2 3 29 29 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47040 * 299.99480 * 1 2 3 31 31 H 1.09009 * 109.46811 * 240.00558 * 2 1 3 32 32 H 1.08997 * 109.47112 * 120.00350 * 2 1 3 33 33 H 1.08995 * 109.45542 * 309.63938 * 5 3 2 34 34 H 1.09000 * 109.45091 * 69.59761 * 5 3 2 35 35 H 1.09002 * 109.57543 * 68.06074 * 6 5 3 36 36 H 1.08995 * 109.57451 * 188.31154 * 6 5 3 37 37 H 1.08996 * 109.47027 * 330.03092 * 13 12 10 38 38 H 1.08996 * 109.46881 * 210.02272 * 13 12 10 39 39 H 1.09002 * 109.47391 * 270.00122 * 17 16 14 40 40 H 1.09001 * 109.46813 * 150.00179 * 17 16 14 41 41 H 1.09004 * 109.47041 * 30.00306 * 17 16 14 42 42 H 1.09002 * 109.47278 * 30.00038 * 18 16 14 43 43 H 1.09006 * 109.46998 * 149.99560 * 18 16 14 44 44 H 0.96995 * 120.00442 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.62084 * 135.42507 * 27 8 7 46 46 H 1.08998 * 109.62138 * 255.97688 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6126 1.9834 0.8444 5 6 3.5679 1.4470 0.1076 6 6 4.0606 2.8749 0.3479 7 6 3.4581 3.7873 -0.7130 8 6 2.3866 3.4289 -1.4204 9 16 2.0323 4.7713 -2.5111 10 6 3.3368 5.7497 -1.9574 11 8 3.6372 6.8636 -2.3488 12 7 3.9522 5.0346 -1.0073 13 6 5.1243 5.5648 -0.3064 14 6 4.6775 6.3221 0.9176 15 8 3.4965 6.4098 1.1789 16 7 5.5906 6.9018 1.7218 17 6 7.0173 6.7953 1.4065 18 6 5.1563 7.6384 2.9114 19 6 4.9267 9.0836 2.5513 20 1 5.0877 9.4197 1.5376 21 6 4.5100 9.9766 3.5156 22 7 4.3134 9.5672 4.7499 23 14 4.2247 11.7678 3.0690 24 1 2.8144 11.9530 2.6423 25 1 4.5003 12.6227 4.2516 26 1 5.1325 12.1517 1.9584 27 6 1.6355 2.1311 -1.3098 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8752 0.8123 0.9388 34 1 3.9982 1.0659 -0.8185 35 1 3.7501 3.2066 1.3387 36 1 5.1479 2.9028 0.2777 37 1 5.6713 6.2354 -0.9690 38 1 5.7722 4.7409 -0.0074 39 1 7.4295 5.9063 1.8837 40 1 7.5376 7.6796 1.7744 41 1 7.1461 6.7209 0.3266 42 1 4.2293 7.2062 3.2881 43 1 5.9263 7.5734 3.6802 44 1 4.0207 10.1955 5.4284 45 1 0.5634 2.3280 -1.3039 46 1 1.8878 1.4891 -2.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065515178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -53.981625 kcal Electronic energy + Delta-G solvation = -27802.682830 eV Core-core repulsion = 24011.611007 eV Total energy + Delta-G solvation = -3791.071823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14783 -38.92315 -38.48751 -36.57541 -34.92233 -33.17384 -32.68298 -31.60513 -29.70434 -28.38842 -27.50491 -25.86871 -24.37308 -24.15534 -22.61443 -22.01598 -20.87056 -19.42554 -18.74731 -18.25288 -17.13085 -16.64912 -16.51277 -15.74303 -15.31575 -15.15131 -15.05545 -14.81667 -14.47083 -14.32954 -14.05400 -13.86419 -13.65959 -13.15542 -12.90994 -12.82955 -12.71923 -12.63366 -12.25490 -12.16209 -11.96958 -11.82570 -11.72886 -11.26668 -11.24824 -11.12355 -10.90511 -10.89679 -10.74353 -10.61958 -10.39710 -10.18730 -9.91772 -9.69622 -9.60995 -8.90720 -8.45842 -7.78551 -7.74704 -6.07467 -4.12094 1.05813 1.45573 1.81397 2.27753 2.80026 3.17322 3.31525 3.37786 3.41566 3.82024 4.25252 4.41861 4.43794 4.48811 4.59506 4.77682 4.91751 4.93326 5.01679 5.09809 5.16307 5.19413 5.27568 5.28600 5.31961 5.37360 5.49778 5.53166 5.60785 5.66840 5.73439 5.74891 5.78341 5.82587 5.89149 6.01606 6.10626 6.16526 6.21034 6.81061 6.92601 7.33856 7.41683 7.46925 7.88691 8.18295 8.24011 8.79810 8.95806 9.53339 11.00704 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.003181 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.558443 B = 8801.104772 C = 9303.027623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.081 0.919 5 C -0.109 4.109 6 C -0.059 4.059 7 C 0.116 3.884 8 C -0.214 4.214 9 S -0.001 6.001 10 C 0.492 3.508 11 O -0.471 6.471 12 N -0.514 5.514 13 C 0.078 3.922 14 C 0.490 3.510 15 O -0.526 6.526 16 N -0.597 5.597 17 C 0.079 3.921 18 C 0.247 3.753 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.021 4.021 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.081 0.919 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -22.507 -10.862 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.099 0.901 5 C -0.147 4.147 6 C -0.098 4.098 7 C 0.006 3.994 8 C -0.334 4.334 9 S 0.245 5.755 10 C 0.174 3.826 11 O -0.350 6.350 12 N -0.233 5.233 13 C -0.051 4.051 14 C 0.274 3.726 15 O -0.402 6.402 16 N -0.330 5.330 17 C -0.065 4.065 18 C 0.128 3.872 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.060 4.060 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.720 -21.373 -11.745 24.398 hybrid contribution 0.983 1.236 0.842 1.789 sum 0.263 -20.137 -10.903 22.900 Atomic orbital electron populations 1.21830 0.95764 1.01542 1.02257 1.21550 0.96063 0.95538 1.02183 1.21356 0.95416 0.96149 0.97918 0.90079 1.21582 0.95544 0.94756 1.02801 1.20767 1.00145 0.92815 0.96107 1.20020 0.95606 0.85262 0.98493 1.23434 1.02416 1.01802 1.05761 1.84757 1.35354 1.11633 1.43791 1.21247 0.88412 0.89580 0.83371 1.90972 1.67220 1.16325 1.60503 1.45672 1.28969 1.14640 1.34014 1.21854 0.87464 1.00532 0.95284 1.20346 0.86963 0.80879 0.84363 1.90719 1.16549 1.60494 1.72432 1.48154 1.05348 1.52035 1.27467 1.21716 0.82718 1.02272 0.99815 1.19322 0.96496 0.90719 0.80628 1.21423 1.46006 0.93347 0.95930 0.92445 1.24921 0.95052 0.99193 0.94826 1.69924 1.46512 1.35320 1.01644 0.86491 0.78870 0.84214 0.77858 1.20480 1.21061 1.19849 1.19997 0.98662 0.89362 0.97992 0.92432 0.92880 0.92528 0.91803 0.91656 0.90426 0.91115 0.88780 0.89883 0.86481 0.86885 0.93326 0.90249 0.92568 0.93846 0.94723 0.92676 0.90101 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.69 37.16 0.36 -0.60 16 2 C -0.12 -0.69 5.39 -26.73 -0.14 -0.83 16 3 C -0.09 -0.68 2.24 -90.32 -0.20 -0.88 16 4 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 5 C -0.11 -0.77 5.15 -26.67 -0.14 -0.91 16 6 C -0.06 -0.57 5.50 -27.09 -0.15 -0.72 16 7 C 0.12 1.53 6.59 -81.02 -0.53 0.99 16 8 C -0.21 -2.64 6.41 -36.20 -0.23 -2.87 16 9 S 0.00 -0.01 22.96 -107.50 -2.47 -2.48 16 10 C 0.49 9.01 8.26 53.66 0.44 9.46 16 11 O -0.47 -10.17 17.50 5.07 0.09 -10.08 16 12 N -0.51 -8.23 2.10 -117.55 -0.25 -8.47 16 13 C 0.08 1.18 4.32 -5.19 -0.02 1.16 16 14 C 0.49 10.18 7.74 -10.98 -0.09 10.10 16 15 O -0.53 -13.49 16.01 5.56 0.09 -13.40 16 16 N -0.60 -12.42 2.86 -182.95 -0.52 -12.95 16 17 C 0.08 1.17 10.24 59.85 0.61 1.78 16 18 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 19 C -0.53 -15.30 9.38 -34.45 -0.32 -15.62 16 20 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 23 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.02 -0.18 5.01 -27.84 -0.14 -0.32 16 28 H 0.06 0.35 6.87 -51.93 -0.36 -0.01 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.11 -51.92 -0.42 -0.09 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.66 6.91 -51.93 -0.36 0.30 16 37 H 0.12 1.72 7.02 -51.93 -0.36 1.35 16 38 H 0.11 1.21 6.48 -51.93 -0.34 0.87 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 42 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 43 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 0.69 7.23 -51.93 -0.38 0.32 16 46 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -36.71 383.98 -9.35 -46.06 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -7.11 Total: -4.78 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.68 Total: 8.86 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.03 Total: -47.47 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.47 Total: -2.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.71 -9.35 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065515178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.921 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds