Wall clock time and date at job start Tue Mar 31 2020 07:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47262 * 2 1 4 4 C 1.35978 * 117.00283 * 180.02562 * 3 2 1 5 5 C 1.38722 * 119.97868 * 359.71549 * 4 3 2 6 6 C 1.38093 * 120.01551 * 179.77294 * 5 4 3 7 7 C 1.38870 * 119.98117 * 0.50655 * 6 5 4 8 8 N 1.40016 * 120.01566 * 179.72466 * 7 6 5 9 9 C 1.38179 * 119.99688 * 212.92637 * 8 7 6 10 10 N 1.32879 * 120.81185 * 5.27782 * 9 8 7 11 11 C 1.32120 * 121.18793 * 179.71005 * 10 9 8 12 12 N 1.31518 * 122.64668 * 0.57819 * 11 10 9 13 13 C 1.33196 * 120.68793 * 359.71324 * 12 11 10 14 14 C 1.40823 * 120.80880 * 185.54635 * 9 8 7 15 15 C 1.41149 * 134.70818 * 0.02562 * 14 9 8 16 16 N 1.30262 * 108.47531 * 179.97438 * 15 14 9 17 17 N 1.36314 * 134.61349 * 179.97438 * 13 12 11 18 18 C 1.46497 * 125.87768 * 0.02562 * 17 13 12 19 19 C 1.50697 * 109.46955 * 89.99755 * 18 17 13 20 20 H 1.08002 * 120.00554 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00117 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99634 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00470 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47025 * 59.99938 * 23 21 19 25 25 H 1.48498 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46824 * 299.99935 * 23 21 19 27 27 C 1.38862 * 119.96352 * 359.74910 * 7 6 5 28 28 C 1.38087 * 119.98381 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47344 * 60.00674 * 1 2 3 30 30 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47192 * 300.00107 * 1 2 3 32 32 H 1.08998 * 109.46801 * 239.99227 * 2 1 3 33 33 H 1.09005 * 109.46803 * 119.99719 * 2 1 3 34 34 H 1.07995 * 119.99245 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.01117 * 180.26277 * 6 5 4 36 36 H 0.96993 * 119.99888 * 32.93005 * 8 7 6 37 37 H 1.07999 * 118.67300 * 180.28943 * 11 10 9 38 38 H 1.08005 * 125.76337 * 359.97438 * 15 14 9 39 39 H 1.08991 * 109.47337 * 209.99860 * 18 17 13 40 40 H 1.08998 * 109.46980 * 330.00237 * 18 17 13 41 41 H 0.97002 * 119.99962 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.00689 * 180.02562 * 27 7 6 43 43 H 1.08001 * 119.99320 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.1991 0.4250 0.0049 6 6 5.5682 0.6051 -0.0004 7 6 6.0994 1.8881 -0.0005 8 7 7.4875 2.0715 0.0000 9 6 8.0406 3.1580 0.6504 10 7 7.2821 3.9806 1.3672 11 6 7.8040 5.0184 1.9967 12 7 9.0861 5.3072 1.9468 13 6 9.9278 4.5459 1.2496 14 6 9.4209 3.4238 0.5651 15 6 10.5129 2.8059 -0.0814 16 7 11.5899 3.4889 0.1839 17 7 11.2688 4.5759 1.0068 18 6 12.2118 5.5734 1.5184 19 6 12.7613 5.1118 2.8435 20 1 12.4405 4.1695 3.2626 21 6 13.6737 5.8925 3.5212 22 7 14.0640 7.0403 3.0112 23 14 14.3554 5.3202 5.1634 24 1 15.0565 4.0235 4.9835 25 1 15.3113 6.3313 5.6821 26 1 13.2409 5.1503 6.1299 27 6 5.2531 2.9891 -0.0006 28 6 3.8843 2.8074 0.0000 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7858 -0.5728 0.0092 35 1 6.2257 -0.2517 -0.0004 36 1 8.0608 1.4360 -0.4563 37 1 7.1506 5.6578 2.5718 38 1 10.4639 1.9170 -0.6929 39 1 13.0300 5.6973 0.8091 40 1 11.6977 6.5255 1.6501 41 1 14.7061 7.5894 3.4877 42 1 5.6655 3.9873 -0.0011 43 1 3.2260 3.6635 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:49 Heat of formation + Delta-G solvation = 93.280866 kcal Electronic energy + Delta-G solvation = -27492.318094 eV Core-core repulsion = 23539.054941 eV Total energy + Delta-G solvation = -3953.263153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.93848 -41.16195 -40.06255 -38.91770 -36.72278 -35.70231 -33.87503 -33.07557 -32.59472 -31.77532 -31.27704 -29.37493 -28.70812 -25.62676 -25.53373 -24.73833 -24.09850 -23.15181 -22.50883 -21.37896 -19.55695 -19.25503 -18.94713 -18.81724 -17.84228 -17.57729 -16.95112 -16.77914 -16.56964 -16.54925 -15.59981 -15.55122 -15.22125 -15.00987 -14.85678 -14.53612 -14.34326 -14.24375 -13.99901 -13.73428 -13.67870 -13.40673 -13.13303 -13.05428 -12.75257 -12.62545 -12.56922 -12.39267 -12.30323 -11.92492 -11.70765 -11.58374 -11.55170 -10.85920 -10.76038 -10.15026 -9.98247 -9.84906 -9.54499 -8.42765 -8.34994 -6.53040 -0.23210 0.29944 0.44784 0.70960 1.31075 1.36646 1.37220 1.47484 1.59524 1.86554 2.31240 2.37560 2.80545 2.93789 3.00589 3.19659 3.34383 3.56205 3.68832 3.89955 4.01355 4.02866 4.13077 4.21042 4.33300 4.38745 4.45268 4.50503 4.70518 4.76500 4.84808 4.85187 5.00083 5.04810 5.11227 5.22561 5.26395 5.38218 5.42023 5.46092 5.51321 5.70569 5.76508 5.77623 6.02261 6.09452 6.50257 6.52713 6.58173 6.73758 7.16312 7.37225 8.71434 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.002064 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.396833 B =13562.263743 C =13796.985035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.103 3.897 5 C -0.188 4.188 6 C -0.101 4.101 7 C 0.107 3.893 8 N -0.622 5.622 9 C 0.511 3.489 10 N -0.603 5.603 11 C 0.374 3.626 12 N -0.596 5.596 13 C 0.338 3.662 14 C -0.337 4.337 15 C 0.101 3.899 16 N -0.285 5.285 17 N -0.365 5.365 18 C 0.284 3.716 19 C -0.553 4.553 20 H 0.046 0.954 21 C 0.020 3.980 22 N -0.918 5.918 23 Si 0.974 3.026 24 H -0.268 1.268 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.081 4.081 28 C -0.144 4.144 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.434 0.566 37 H 0.232 0.768 38 H 0.244 0.756 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.274 0.726 42 H 0.133 0.867 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.326 -17.317 -8.541 31.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.057 3.943 5 C -0.207 4.207 6 C -0.122 4.122 7 C 0.012 3.988 8 N -0.248 5.248 9 C 0.258 3.742 10 N -0.332 5.332 11 C 0.081 3.919 12 N -0.323 5.323 13 C 0.090 3.910 14 C -0.354 4.354 15 C -0.094 4.094 16 N -0.100 5.100 17 N -0.151 5.151 18 C 0.166 3.834 19 C -0.592 4.592 20 H 0.065 0.935 21 C -0.181 4.181 22 N -0.557 5.557 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.102 4.102 28 C -0.164 4.164 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.275 0.725 37 H 0.248 0.752 38 H 0.260 0.740 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.490 -16.166 -8.132 30.451 hybrid contribution 0.817 -0.480 0.444 1.047 sum -23.673 -16.645 -7.688 29.943 Atomic orbital electron populations 1.21809 0.91916 1.04042 1.03032 1.23039 0.96633 0.80930 1.02336 1.86070 1.18876 1.31157 1.88882 1.19113 0.82741 0.94344 0.98070 1.21242 0.93193 0.98839 1.07414 1.20898 0.95311 0.95349 1.00624 1.17736 0.81955 0.94313 1.04754 1.41706 1.05442 1.24326 1.53355 1.17954 0.85034 0.86342 0.84842 1.68280 1.37860 1.09600 1.17474 1.25246 0.87009 0.89940 0.89669 1.67541 1.05004 1.34508 1.25226 1.19350 0.86928 0.92023 0.92650 1.19678 0.95851 1.04563 1.15315 1.24345 0.86628 1.00148 0.98276 1.76916 1.24988 0.98078 1.09998 1.49119 1.03886 1.22899 1.39242 1.19136 0.86350 0.84112 0.93851 1.21358 1.26615 1.06185 1.05015 0.93535 1.25792 0.95723 0.94550 1.02026 1.70006 1.32520 1.12470 1.40654 0.85366 0.78256 0.78434 0.78174 1.19335 1.19375 1.19673 1.20983 0.91973 0.99157 0.98100 1.20392 0.94537 0.95551 1.05883 0.91945 0.88297 0.92142 0.90835 0.91190 0.82843 0.82841 0.72461 0.75232 0.74022 0.94963 0.94876 0.91689 0.84962 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 71.98 0.74 -0.39 16 2 C 0.05 0.46 5.46 71.98 0.39 0.85 16 3 O -0.34 -5.96 10.14 -93.30 -0.95 -6.90 16 4 C 0.10 1.92 6.69 22.50 0.15 2.08 16 5 C -0.19 -2.77 9.03 22.35 0.20 -2.57 16 6 C -0.10 -1.52 9.96 22.39 0.22 -1.30 16 7 C 0.11 2.11 6.31 38.13 0.24 2.35 16 8 N -0.62 -12.39 5.47 -184.39 -1.01 -13.40 16 9 C 0.51 14.63 7.28 133.62 0.97 15.61 16 10 N -0.60 -18.08 7.23 -196.93 -1.42 -19.51 16 11 C 0.37 12.14 12.24 180.87 2.21 14.35 16 12 N -0.60 -25.41 10.47 -198.09 -2.07 -27.49 16 13 C 0.34 15.05 8.04 134.15 1.08 16.13 16 14 C -0.34 -11.60 6.14 -21.29 -0.13 -11.73 16 15 C 0.10 3.14 11.88 85.64 1.02 4.15 16 16 N -0.29 -12.13 12.45 -56.46 -0.70 -12.84 16 17 N -0.37 -18.05 3.63 -348.95 -1.27 -19.32 16 18 C 0.28 16.08 6.19 85.63 0.53 16.61 16 19 C -0.55 -32.86 9.39 25.60 0.24 -32.61 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 21 C 0.02 1.15 5.46 84.65 0.46 1.61 16 22 N -0.92 -54.46 13.29 21.45 0.28 -54.17 16 23 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 C -0.08 -1.80 8.60 22.38 0.19 -1.61 16 28 C -0.14 -2.97 9.98 22.35 0.22 -2.74 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 33 H 0.07 0.58 7.65 -2.38 -0.02 0.56 16 34 H 0.15 1.41 6.29 -2.91 -0.02 1.39 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.43 5.67 8.69 -92.71 -0.81 4.86 16 37 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 38 H 0.24 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.13 3.28 6.24 -2.91 -0.02 3.26 16 43 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -77.34 372.06 3.90 -73.44 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.26 Total: 12.45 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 8.75 Total: 20.78 kcal Atomic # 7 Polarization: -140.53 SS G_CDS: -6.19 Total: -146.72 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.95 Total: -6.90 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.34 3.90 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.725 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds