Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50703 * 109.46877 * 90.00092 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46855 * 90.00279 * 8 6 4 10 10 H 1.48499 * 109.47326 * 210.00609 * 8 6 4 11 11 H 1.48497 * 109.46885 * 330.00481 * 8 6 4 12 12 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 13 13 O 1.21281 * 120.00220 * 179.72597 * 12 2 1 14 14 C 1.50706 * 120.00080 * 359.72107 * 12 2 1 15 15 N 1.46889 * 109.47109 * 180.02562 * 14 12 2 16 16 C 1.46959 * 111.00102 * 293.79785 * 15 14 12 17 17 C 1.53049 * 109.36362 * 176.81680 * 16 15 14 18 18 N 1.46955 * 109.36833 * 58.40206 * 17 16 15 19 19 C 1.46902 * 111.00055 * 176.80816 * 18 17 16 20 20 C 1.50695 * 109.47350 * 293.80339 * 19 18 17 21 21 C 1.33640 * 122.75325 * 94.73001 * 20 19 18 22 22 S 1.76204 * 107.92383 * 179.97438 * 21 20 19 23 23 C 1.70979 * 90.28178 * 0.27514 * 22 21 20 24 24 N 1.29027 * 110.16913 * 359.83940 * 23 22 21 25 25 C 1.46955 * 110.87907 * 300.67589 * 18 17 16 26 26 C 1.46965 * 110.99870 * 170.00198 * 15 14 12 27 27 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 28 28 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 29 29 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 30 30 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 31 31 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 32 32 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46762 * 300.00389 * 14 12 2 34 34 H 1.08998 * 109.46924 * 59.99727 * 14 12 2 35 35 H 1.09007 * 109.48694 * 296.78149 * 16 15 14 36 36 H 1.09001 * 109.48949 * 56.84570 * 16 15 14 37 37 H 1.09002 * 109.48821 * 298.42916 * 17 16 15 38 38 H 1.09010 * 109.48725 * 178.36933 * 17 16 15 39 39 H 1.09007 * 109.46571 * 53.80019 * 19 18 17 40 40 H 1.08994 * 109.47024 * 173.79559 * 19 18 17 41 41 H 1.07995 * 126.03489 * 0.04473 * 21 20 19 42 42 H 1.07996 * 124.91363 * 179.83680 * 23 22 21 43 43 H 1.08990 * 109.49170 * 299.35491 * 25 18 17 44 44 H 1.08999 * 109.48583 * 179.28614 * 25 18 17 45 45 H 1.08995 * 109.48409 * 303.15092 * 26 15 14 46 46 H 1.08996 * 109.48948 * 63.19607 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5542 3.6176 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.7321 2.8594 3.9014 10 1 3.4860 4.8999 3.4962 11 1 2.3416 2.9206 4.3044 12 6 2.1389 -1.1671 -0.0057 13 8 3.3517 -1.1672 -0.0107 14 6 1.3854 -2.4723 -0.0057 15 7 2.3399 -3.5888 -0.0119 16 6 3.0981 -3.6265 -1.2702 17 6 4.1338 -4.7514 -1.2051 18 7 3.4500 -6.0302 -0.9671 19 6 4.4046 -7.1468 -0.9733 20 6 4.9834 -7.3052 -2.3557 21 6 6.1402 -6.7463 -2.7236 22 16 6.4420 -7.1807 -4.4044 23 6 4.9786 -8.0640 -4.4476 24 7 4.3870 -8.0011 -3.3027 25 6 2.6919 -5.9926 0.2912 26 6 1.6561 -4.8677 0.2261 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 3.1499 1.1384 -0.5138 31 1 1.6084 2.0285 -0.5138 32 1 4.0310 4.4435 0.8505 33 1 0.7624 -2.5322 0.8867 34 1 0.7550 -2.5278 -0.8932 35 1 2.4158 -3.8081 -2.1007 36 1 3.6055 -2.6731 -1.4178 37 1 4.8326 -4.5557 -0.3917 38 1 4.6779 -4.8000 -2.1485 39 1 5.2073 -6.9425 -0.2646 40 1 3.8918 -8.0648 -0.6867 41 1 6.7779 -6.1370 -2.1005 42 1 4.6038 -8.5974 -5.3086 43 1 3.3742 -5.8110 1.1216 44 1 2.1846 -6.9459 0.4387 45 1 1.1122 -4.8191 1.1694 46 1 0.9571 -5.0631 -0.5871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065953034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = 43.184119 kcal Electronic energy + Delta-G solvation = -27051.657744 eV Core-core repulsion = 23297.092095 eV Total energy + Delta-G solvation = -3754.565649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34413 -39.48429 -38.28266 -35.43912 -34.62050 -32.60152 -31.49925 -30.78541 -29.27901 -27.84327 -26.55471 -25.62772 -24.83773 -23.61751 -23.40119 -22.18989 -19.85059 -19.76212 -18.43053 -18.22114 -16.64335 -16.47619 -16.13388 -16.10257 -15.44636 -15.24682 -15.05305 -14.66431 -14.57462 -14.27917 -14.21118 -13.75404 -13.63510 -13.53883 -13.16694 -12.74325 -12.55089 -12.23008 -12.15020 -12.02245 -11.78271 -11.68581 -11.35667 -11.22856 -11.20397 -10.86192 -10.79924 -10.76573 -10.54807 -10.13306 -9.90992 -9.70701 -9.59300 -9.17811 -8.86749 -8.46813 -8.41769 -8.10511 -7.59328 -6.02602 -4.07046 0.44399 1.12655 1.46149 2.48630 3.32491 3.38062 3.39539 3.48232 3.69296 3.84793 3.95510 4.25375 4.47470 4.69827 4.81757 4.90994 5.01937 5.03902 5.14694 5.21250 5.27826 5.32037 5.37329 5.41057 5.47610 5.52598 5.54963 5.62163 5.73107 5.76388 5.82975 5.87313 5.93803 6.07985 6.19039 6.23126 6.78631 6.87796 6.99863 7.17603 7.22130 7.46322 7.48975 7.57760 7.94350 8.25706 8.45677 8.93235 9.15837 9.58092 11.05491 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002290 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.304967 B =12226.562768 C =12836.415190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.506 3.494 13 O -0.525 6.525 14 C 0.039 3.961 15 N -0.521 5.521 16 C 0.056 3.944 17 C 0.059 3.941 18 N -0.534 5.534 19 C 0.129 3.871 20 C 0.077 3.923 21 C -0.249 4.249 22 S 0.114 5.886 23 C 0.019 3.981 24 N -0.454 5.454 25 C 0.062 3.938 26 C 0.058 3.942 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.177 0.823 42 H 0.198 0.802 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -23.952 -8.241 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.401 6.401 14 C -0.092 4.092 15 N -0.246 5.246 16 C -0.072 4.072 17 C -0.069 4.069 18 N -0.259 5.259 19 C -0.001 4.001 20 C -0.056 4.056 21 C -0.389 4.389 22 S 0.366 5.634 23 C -0.280 4.280 24 N -0.167 5.167 25 C -0.066 4.066 26 C -0.070 4.070 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.195 0.805 42 H 0.215 0.785 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.133 -23.843 -8.965 25.473 hybrid contribution -0.308 0.560 1.697 1.813 sum -0.175 -23.283 -7.268 24.392 Atomic orbital electron populations 1.21623 0.81598 1.02520 1.00281 1.48169 1.06088 1.07815 1.71807 1.19267 0.92500 0.78038 0.97467 1.21436 1.36328 1.06162 0.92331 0.92485 1.24939 0.95409 0.96413 0.97411 1.69936 1.38486 1.14402 1.30706 0.86498 0.78777 0.77485 0.84654 1.20555 1.21176 1.19949 1.20145 0.88244 0.84686 0.77798 1.90625 1.13669 1.86768 1.49076 1.22016 0.94229 0.90755 1.02211 1.61790 1.25493 1.01725 1.35563 1.22309 0.95809 0.99926 0.89142 1.22199 0.95886 0.87723 1.01089 1.62115 1.26081 1.03029 1.34702 1.20522 0.94593 0.95743 0.89274 1.20147 0.91810 0.96703 0.96909 1.26970 1.03383 1.09609 0.98925 1.84095 1.24167 1.46060 1.09039 1.28419 0.96154 1.03660 0.99729 1.66104 1.32421 1.18323 0.99837 1.22124 0.96017 0.98432 0.90065 1.22160 0.95261 0.88558 1.01034 0.93877 0.92624 0.90733 0.93894 0.95091 0.92756 0.88467 0.92683 0.94978 0.87883 0.93492 0.90665 0.92873 0.89056 0.80550 0.78498 0.93608 0.90212 0.90186 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.61 -12.92 2.86 -182.95 -0.52 -13.45 16 3 C 0.25 6.50 5.17 -5.19 -0.03 6.48 16 4 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.51 10.57 7.37 -10.98 -0.08 10.49 16 13 O -0.53 -13.15 13.91 5.56 0.08 -13.08 16 14 C 0.04 0.60 4.00 -4.98 -0.02 0.58 16 15 N -0.52 -7.95 4.45 -235.90 -1.05 -9.00 16 16 C 0.06 0.86 5.26 -3.77 -0.02 0.84 16 17 C 0.06 0.78 5.35 -3.77 -0.02 0.76 16 18 N -0.53 -6.32 4.70 -235.91 -1.11 -7.43 16 19 C 0.13 1.31 5.41 -4.98 -0.03 1.28 16 20 C 0.08 0.82 5.59 -84.23 -0.47 0.35 16 21 C -0.25 -2.29 9.79 29.12 0.28 -2.01 16 22 S 0.11 0.87 23.22 -107.50 -2.50 -1.63 16 23 C 0.02 0.16 12.23 51.58 0.63 0.79 16 24 N -0.45 -5.06 10.53 -11.90 -0.13 -5.18 16 25 C 0.06 0.67 5.61 -3.77 -0.02 0.65 16 26 C 0.06 0.69 5.61 -3.76 -0.02 0.67 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.71 6.45 -51.93 -0.33 0.38 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 30 H 0.04 1.27 7.41 -51.93 -0.38 0.89 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.10 1.32 7.29 -51.93 -0.38 0.95 16 34 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.10 1.90 5.85 -51.93 -0.30 1.59 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.97 6.28 -51.92 -0.33 0.64 16 39 H 0.05 0.49 8.08 -51.92 -0.42 0.07 16 40 H 0.09 0.86 8.03 -51.93 -0.42 0.45 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 45 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -34.89 382.97 -10.50 -45.39 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.17 Total: -1.48 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 0.40 Total: 9.13 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -2.07 Total: -61.17 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.89 -10.50 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065953034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.572 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds