Wall clock time and date at job start Tue Mar 31 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47267 * 295.47386 * 3 2 1 5 5 C 1.37100 * 119.99816 * 96.17407 * 4 3 2 6 6 H 1.08003 * 119.99776 * 162.27707 * 5 4 3 7 7 C 1.38944 * 120.00278 * 342.26916 * 5 4 3 8 8 N 1.31413 * 120.00194 * 339.22753 * 7 5 4 9 9 Si 1.86803 * 120.00066 * 159.49521 * 7 5 4 10 10 H 1.48496 * 109.47154 * 179.72647 * 9 7 5 11 11 H 1.48503 * 109.47106 * 299.73120 * 9 7 5 12 12 H 1.48504 * 109.46836 * 59.72747 * 9 7 5 13 13 C 1.34777 * 119.99514 * 276.16734 * 4 3 2 14 14 O 1.21294 * 119.99655 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00301 * 0.02562 * 13 4 3 16 16 H 1.09004 * 115.54579 * 325.65983 * 15 13 4 17 17 C 1.52995 * 117.50028 * 111.37679 * 15 13 4 18 18 C 1.52998 * 60.00262 * 107.48746 * 17 15 13 19 19 H 1.08993 * 117.52117 * 107.47850 * 18 17 15 20 20 C 1.50701 * 117.49484 * 252.50815 * 18 17 15 21 21 C 1.38266 * 119.97937 * 188.61761 * 20 18 17 22 22 C 1.38200 * 120.03960 * 180.02562 * 21 20 18 23 23 C 1.38352 * 120.00113 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 120.01902 * 179.97438 * 23 22 21 25 25 C 1.38444 * 119.95588 * 359.97438 * 23 22 21 26 26 Cl 1.73604 * 120.01461 * 180.02562 * 25 23 22 27 27 C 1.38204 * 119.98367 * 8.35077 * 20 18 17 28 28 H 1.08997 * 109.47074 * 175.47266 * 3 2 1 29 29 H 1.09004 * 109.47234 * 55.47489 * 3 2 1 30 30 H 0.97003 * 120.00302 * 179.97438 * 8 7 5 31 31 H 1.09001 * 117.49930 * 214.97800 * 17 15 13 32 32 H 1.09004 * 117.50251 * 359.97438 * 17 15 13 33 33 H 1.08006 * 119.97813 * 0.02777 * 21 20 18 34 34 H 1.08007 * 120.00136 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.00021 * 359.97438 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.5932 1.2469 5 6 3.4461 -1.9184 1.2842 6 1 4.0627 -2.2918 2.0885 7 6 3.0071 -2.7810 0.2874 8 7 1.9610 -2.4640 -0.4421 9 14 3.8992 -4.3949 -0.0108 10 1 3.2347 -5.1309 -1.1162 11 1 5.3115 -4.1193 -0.3782 12 1 3.8608 -5.2174 1.2250 13 6 3.2027 0.1633 2.3573 14 8 3.6068 -0.3284 3.3898 15 6 2.8181 1.6199 2.3163 16 1 3.0246 2.1343 1.3778 17 6 1.5715 2.0435 3.0955 18 6 2.9611 2.4249 3.6096 19 1 3.2615 3.4689 3.5218 20 6 3.4756 1.7006 4.8268 21 6 4.6401 2.1227 5.4412 22 6 5.1133 1.4590 6.5572 23 6 4.4219 0.3712 7.0602 24 17 5.0162 -0.4631 8.4616 25 6 3.2559 -0.0513 6.4450 26 17 2.3868 -1.4157 7.0751 27 6 2.7801 0.6182 5.3318 28 1 2.9709 1.0252 -0.0811 29 1 2.9716 -0.5816 -0.8467 30 1 1.6547 -3.0661 -1.1383 31 1 0.9572 2.8369 2.6695 32 1 1.0291 1.2687 3.6374 33 1 5.1803 2.9716 5.0486 34 1 6.0233 1.7890 7.0364 35 1 1.8681 0.2919 4.8542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068767557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:54 Heat of formation + Delta-G solvation = 53.911169 kcal Electronic energy + Delta-G solvation = -24336.941443 eV Core-core repulsion = 20581.714378 eV Total energy + Delta-G solvation = -3755.227065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.033 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.11812 -38.58819 -36.82489 -36.19412 -35.88652 -35.37614 -34.27732 -31.91605 -30.57669 -30.15940 -27.56970 -25.64799 -23.86307 -23.05383 -22.43052 -20.53595 -18.89063 -17.94234 -17.45052 -16.57074 -16.36175 -15.56828 -15.26791 -14.82121 -14.47809 -14.16217 -13.77982 -13.71276 -13.57733 -13.31965 -13.03095 -12.52198 -12.11608 -11.98374 -11.77356 -11.64593 -11.54471 -11.46777 -11.34449 -11.25304 -11.14958 -10.71378 -10.63810 -10.55705 -10.46594 -10.43662 -10.17388 -10.12174 -9.30268 -8.97264 -8.36150 -8.07185 -7.81083 -6.55950 -4.04739 1.26227 1.51039 2.14523 2.54487 3.04908 3.19247 3.21096 3.31017 3.59835 3.83691 3.96033 4.07243 4.26444 4.56672 4.76015 4.87110 4.90494 5.04506 5.13241 5.22997 5.33323 5.37713 5.51846 5.54476 5.67519 5.85059 5.97493 6.04671 6.08570 6.18658 6.32404 6.37106 6.47277 6.73565 6.92383 7.41921 7.84397 8.22481 8.70945 8.94892 9.14039 9.68634 10.49540 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.004328 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.759133 B = 6468.616557 C = 7633.086393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.248 3.752 3 C 0.220 3.780 4 N -0.434 5.434 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.876 5.876 9 Si 0.926 3.074 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.272 1.272 13 C 0.474 3.526 14 O -0.554 6.554 15 C -0.164 4.164 16 H 0.120 0.880 17 C -0.151 4.151 18 C -0.096 4.096 19 H 0.120 0.880 20 C -0.016 4.016 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.033 4.033 24 Cl -0.070 7.070 25 C -0.032 4.032 26 Cl -0.063 7.063 27 C -0.018 4.018 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.274 0.726 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 10.723 7.227 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.071 4.071 3 C 0.093 3.907 4 N -0.153 5.153 5 C -0.438 4.438 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.515 5.515 9 Si 0.752 3.248 10 H -0.210 1.210 11 H -0.197 1.197 12 H -0.198 1.198 13 C 0.263 3.737 14 O -0.437 6.437 15 C -0.185 4.185 16 H 0.138 0.862 17 C -0.188 4.188 18 C -0.114 4.114 19 H 0.138 0.862 20 C -0.017 4.017 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.061 4.061 24 Cl -0.041 7.041 25 C -0.060 4.060 26 Cl -0.035 7.035 27 C -0.037 4.037 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.345 10.136 7.747 13.189 hybrid contribution 0.691 -1.305 -0.437 1.540 sum 4.036 8.832 7.310 12.154 Atomic orbital electron populations 1.80894 1.13577 1.12045 1.08725 1.29255 0.95303 0.90087 0.92435 1.18751 0.81712 0.98263 0.91988 1.43602 1.55729 1.09713 1.06227 1.19678 1.29910 0.82711 1.11489 0.87340 1.25266 0.94982 0.99691 0.97101 1.69852 1.20223 1.38930 1.22481 0.85986 0.79490 0.81042 0.78259 1.20972 1.19674 1.19756 1.19199 0.84360 0.86375 0.83790 1.90603 1.50186 1.73739 1.29169 1.22443 1.03802 0.96087 0.96174 0.86248 1.23068 0.90046 1.03252 1.02477 1.20998 1.00198 0.98376 0.91841 0.86211 1.18818 0.94254 0.94657 0.93970 1.20777 0.95687 1.00324 0.95201 1.20732 1.00063 0.94910 0.97483 1.20606 0.95716 0.97241 0.92490 1.98345 1.87814 1.77962 1.39994 1.20508 0.94551 0.93075 0.97820 1.98357 1.75667 1.43185 1.86242 1.20633 0.99903 0.92456 0.90720 0.89946 0.85510 0.91528 0.87791 0.88203 0.85242 0.84897 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.71 18.54 42.15 0.78 -9.92 16 2 C 0.25 5.17 13.48 -20.76 -0.28 4.89 16 3 C 0.22 4.10 4.91 -6.83 -0.03 4.07 16 4 N -0.43 -9.45 2.60 -117.93 -0.31 -9.76 16 5 C -0.31 -7.66 9.33 -14.93 -0.14 -7.80 16 6 H 0.11 2.86 7.38 -52.48 -0.39 2.47 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.72 16 8 N -0.88 -21.43 9.46 55.50 0.53 -20.90 16 9 Si 0.93 19.38 29.60 -169.99 -5.03 14.35 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 C 0.47 9.69 7.21 -10.99 -0.08 9.61 16 14 O -0.55 -12.72 11.38 5.55 0.06 -12.66 16 15 C -0.16 -2.49 5.16 -91.77 -0.47 -2.97 16 16 H 0.12 1.49 6.53 -51.93 -0.34 1.15 16 17 C -0.15 -2.09 9.57 -26.73 -0.26 -2.34 16 18 C -0.10 -1.25 6.04 -91.77 -0.55 -1.81 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.02 -0.25 4.35 -104.62 -0.46 -0.70 16 21 C -0.10 -1.35 9.73 -39.58 -0.39 -1.74 16 22 C -0.11 -1.53 9.83 -39.55 -0.39 -1.92 16 23 C -0.03 -0.52 6.32 -39.46 -0.25 -0.77 16 24 Cl -0.07 -1.00 27.96 -51.86 -1.45 -2.45 16 25 C -0.03 -0.55 6.32 -39.47 -0.25 -0.80 16 26 Cl -0.06 -1.08 27.96 -51.86 -1.45 -2.53 16 27 C -0.02 -0.31 5.97 -39.56 -0.24 -0.55 16 28 H 0.08 1.15 6.28 -51.93 -0.33 0.82 16 29 H 0.13 2.46 6.41 -51.93 -0.33 2.12 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.57 6.17 -51.93 -0.32 1.25 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.13 2.43 5.79 -52.49 -0.30 2.13 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -28.96 331.23 -8.58 -37.54 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.84 Total: 3.44 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.87 Total: -2.10 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.00 Total: -40.59 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.06 Total: -12.66 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -2.90 Total: -4.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.96 -8.58 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068767557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.448 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds