Wall clock time and date at job start Tue Mar 31 2020 07:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 299.99778 * 3 2 1 6 6 H 1.48498 * 109.47105 * 59.99849 * 3 2 1 7 7 C 1.38808 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 157.08366 * 7 2 1 9 9 N 1.36945 * 119.99551 * 337.08699 * 7 2 1 10 10 C 1.46491 * 120.00024 * 325.20682 * 9 7 2 11 11 C 1.50700 * 109.47112 * 274.99940 * 10 9 7 12 12 C 1.38235 * 120.00196 * 269.72690 * 11 10 9 13 13 C 1.38234 * 120.00075 * 179.81010 * 12 11 10 14 14 C 1.38232 * 120.00042 * 0.41905 * 13 12 11 15 15 C 1.38237 * 119.99959 * 359.81092 * 14 13 12 16 16 C 1.38237 * 120.00117 * 0.02562 * 15 14 13 17 17 S 1.65596 * 119.99785 * 145.20548 * 9 7 2 18 18 O 1.42098 * 104.27783 * 157.19806 * 17 9 7 19 19 O 1.42105 * 104.27823 * 29.34232 * 17 9 7 20 20 C 1.81395 * 104.45309 * 273.26985 * 17 9 7 21 21 C 1.53001 * 109.47610 * 180.02562 * 20 17 9 22 22 H 1.08999 * 109.49071 * 60.02461 * 21 20 17 23 23 C 1.53086 * 109.48332 * 180.02562 * 21 20 17 24 24 C 1.53180 * 109.16280 * 177.58949 * 23 21 20 25 25 C 1.53174 * 109.03761 * 303.01901 * 24 23 21 26 26 C 1.53093 * 109.16028 * 56.98042 * 25 24 23 27 27 O 1.42898 * 109.41586 * 302.38689 * 26 25 24 28 28 H 0.97005 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47645 * 35.00071 * 10 9 7 30 30 H 1.09004 * 109.47288 * 155.00009 * 10 9 7 31 31 H 1.08005 * 119.99743 * 359.97438 * 12 11 10 32 32 H 1.08000 * 120.00194 * 180.20978 * 13 12 11 33 33 H 1.08004 * 120.00394 * 179.79311 * 14 13 12 34 34 H 1.08005 * 119.99885 * 179.97438 * 15 14 13 35 35 H 1.07995 * 119.99900 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47316 * 59.99754 * 20 17 9 37 37 H 1.09007 * 109.47260 * 300.00234 * 20 17 9 38 38 H 1.09005 * 109.52688 * 297.49712 * 23 21 20 39 39 H 1.09006 * 109.52385 * 57.68357 * 23 21 20 40 40 H 1.09008 * 109.54115 * 183.15049 * 24 23 21 41 41 H 1.09000 * 109.54125 * 62.89068 * 24 23 21 42 42 H 1.09006 * 109.52011 * 297.07583 * 25 24 23 43 43 H 1.08993 * 109.57647 * 176.91992 * 25 24 23 44 44 H 1.09005 * 109.47749 * 182.40989 * 26 25 24 45 45 H 1.08996 * 109.48056 * 62.37547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0264 -1.2391 -0.3636 9 7 1.4066 -2.3410 0.4628 10 6 0.4611 -2.2674 1.5793 11 6 1.2176 -2.3127 2.8819 12 6 1.4754 -3.5273 3.4897 13 6 2.1727 -3.5691 4.6825 14 6 2.6046 -2.3958 5.2721 15 6 2.3427 -1.1809 4.6668 16 6 1.6483 -1.1393 3.4722 17 16 1.7455 -3.8015 -0.2404 18 8 1.4221 -4.7561 0.7612 19 8 3.0772 -3.6610 -0.7159 20 6 0.5829 -3.9164 -1.6281 21 6 0.7986 -5.2391 -2.3661 22 1 0.6289 -6.0697 -1.6810 23 6 -0.1820 -5.3360 -3.5377 24 6 0.0804 -6.6343 -4.3071 25 6 1.5410 -6.6552 -4.7682 26 6 2.4550 -6.5074 -3.5491 27 8 2.1378 -5.2954 -2.8617 28 1 -0.4851 0.8401 -0.0004 29 1 -0.1016 -1.3359 1.5182 30 1 -0.2268 -3.1115 1.5291 31 1 1.1343 -4.4437 3.0311 32 1 2.3770 -4.5182 5.1556 33 1 3.1465 -2.4281 6.2058 34 1 2.6798 -0.2641 5.1277 35 1 1.4434 -0.1901 2.9996 36 1 0.7519 -3.0857 -2.3135 37 1 -0.4388 -3.8737 -1.2507 38 1 -1.2039 -5.3376 -3.1583 39 1 -0.0407 -4.4837 -4.2024 40 1 -0.5769 -6.6828 -5.1753 41 1 -0.1089 -7.4882 -3.6566 42 1 1.7171 -5.8296 -5.4578 43 1 1.7521 -7.5997 -5.2695 44 1 3.4946 -6.4787 -3.8756 45 1 2.3075 -7.3546 -2.8793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068897114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:38 Heat of formation + Delta-G solvation = -96.113927 kcal Electronic energy + Delta-G solvation = -28658.022859 eV Core-core repulsion = 24767.405381 eV Total energy + Delta-G solvation = -3890.617478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.21254 -38.59623 -35.70112 -35.61248 -34.39849 -33.52966 -32.53080 -31.99470 -30.32517 -30.17991 -27.65324 -25.97522 -24.17348 -23.76548 -22.16467 -21.83410 -20.60367 -20.18619 -18.36963 -17.04428 -16.63537 -16.24008 -15.97992 -15.71857 -15.30194 -14.84712 -14.53204 -14.46298 -14.40163 -14.27452 -14.12000 -13.43503 -13.17632 -12.74204 -12.72601 -12.57461 -12.30127 -12.08824 -11.89006 -11.70952 -11.52443 -11.24038 -11.18961 -11.02980 -11.01292 -10.73758 -10.68464 -10.62343 -10.53717 -10.40245 -10.27108 -10.19847 -9.95149 -9.64234 -9.28246 -9.09193 -8.23318 -8.05908 -7.86660 -6.60355 -4.13712 1.60283 2.08619 2.10013 3.07270 3.16566 3.25225 3.92410 3.94699 4.25314 4.57008 4.70521 4.79759 4.83578 4.89380 5.05849 5.21982 5.25721 5.41054 5.50021 5.51212 5.56255 5.57370 5.66177 5.67162 5.78564 5.85586 5.92279 5.93820 6.03419 6.07355 6.11880 6.18371 6.29347 6.31989 6.34345 6.58028 6.67961 6.74516 7.00479 7.12078 7.15231 7.17370 7.35712 7.42495 7.59176 7.74043 8.30423 8.68747 9.17078 10.35901 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004469 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.256728 B = 6263.200483 C = 7652.166422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.037 3.963 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.109 0.891 9 N -0.805 5.805 10 C 0.156 3.844 11 C -0.078 4.078 12 C -0.106 4.106 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.135 4.135 16 C -0.092 4.092 17 S 2.497 3.503 18 O -1.004 7.004 19 O -0.964 6.964 20 C -0.649 4.649 21 C 0.104 3.896 22 H 0.060 0.940 23 C -0.143 4.143 24 C -0.124 4.124 25 C -0.156 4.156 26 C 0.057 3.943 27 O -0.369 6.369 28 H 0.274 0.726 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -5.842 -1.292 6.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.175 4.175 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.389 4.389 8 H 0.126 0.874 9 N -0.628 5.628 10 C 0.029 3.971 11 C -0.080 4.080 12 C -0.125 4.125 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.111 4.111 17 S 2.598 3.402 18 O -0.994 6.994 19 O -0.954 6.954 20 C -0.768 4.768 21 C 0.046 3.954 22 H 0.078 0.922 23 C -0.181 4.181 24 C -0.162 4.162 25 C -0.194 4.194 26 C -0.020 4.020 27 O -0.288 6.288 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.553 -6.478 -1.109 6.753 hybrid contribution -0.469 0.777 -0.678 1.133 sum -2.022 -5.701 -1.787 6.307 Atomic orbital electron populations 1.69951 1.06385 1.28447 1.42278 1.25683 0.95222 1.00639 0.95946 0.86051 0.80860 0.80963 0.78280 1.18428 1.20386 1.20033 1.19798 0.96505 0.84399 1.38219 0.87383 1.53521 1.53476 1.22542 1.33290 1.20307 0.90482 1.04803 0.81495 1.20497 0.98448 0.92691 0.96341 1.21491 0.97636 0.98663 0.94662 1.21060 0.99947 0.97609 0.96637 1.20980 1.01289 0.92968 0.99887 1.21044 1.00444 0.97323 0.96534 1.21093 0.97033 0.98494 0.94471 1.12218 0.77726 0.75385 0.74869 1.93311 1.86158 1.63865 1.56066 1.93388 1.34334 1.85526 1.82181 1.30986 1.20289 1.01982 1.23521 1.21641 0.83164 0.96178 0.94443 0.92201 1.22185 0.99740 0.98238 0.97974 1.21634 0.96461 0.97980 1.00131 1.22204 0.95779 1.02498 0.98934 1.22588 0.99343 0.87431 0.92613 1.88139 1.28475 1.38252 1.73925 0.91532 0.86671 0.91962 0.84677 0.86977 0.87177 0.86976 0.86186 0.85660 0.86060 0.90880 0.90778 0.91577 0.91902 0.90943 0.91099 0.88642 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.29 11.31 55.49 0.63 -18.66 16 2 C 0.04 0.86 4.99 -17.43 -0.09 0.77 16 3 Si 0.91 18.42 29.61 -169.99 -5.03 13.39 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.24 -5.99 9.09 -15.06 -0.14 -6.13 16 8 H 0.11 2.78 7.37 -52.49 -0.39 2.40 16 9 N -0.81 -19.02 2.75 -61.09 -0.17 -19.19 16 10 C 0.16 3.40 5.03 -5.20 -0.03 3.38 16 11 C -0.08 -1.62 5.43 -104.62 -0.57 -2.19 16 12 C -0.11 -2.12 9.20 -39.58 -0.36 -2.49 16 13 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 14 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 15 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 16 C -0.09 -1.81 9.70 -39.58 -0.38 -2.19 16 17 S 2.50 58.47 5.14 -107.50 -0.55 57.92 16 18 O -1.00 -24.03 14.83 -57.54 -0.85 -24.88 16 19 O -0.96 -25.80 16.28 -61.87 -1.01 -26.80 16 20 C -0.65 -12.87 5.90 37.16 0.22 -12.65 16 21 C 0.10 1.87 2.69 -26.69 -0.07 1.80 16 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.14 -2.06 5.42 -26.59 -0.14 -2.20 16 24 C -0.12 -1.47 6.03 -26.55 -0.16 -1.63 16 25 C -0.16 -1.84 6.14 -26.59 -0.16 -2.00 16 26 C 0.06 0.82 6.84 37.21 0.25 1.08 16 27 O -0.37 -7.09 9.45 -41.89 -0.40 -7.49 16 28 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 29 H 0.12 2.58 5.30 -51.93 -0.28 2.31 16 30 H 0.06 1.27 7.45 -51.93 -0.39 0.89 16 31 H 0.14 2.79 6.53 -52.48 -0.34 2.44 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.12 2.57 8.14 -51.92 -0.42 2.15 16 37 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -29.27 374.05 -11.44 -40.71 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.87 Total: 11.87 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -2.82 Total: -32.50 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.46 Total: -37.85 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -2.26 Total: -59.17 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 58.47 SS G_CDS: -0.55 Total: 57.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.27 -11.44 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.408 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds