Wall clock time and date at job start Tue Mar 31 2020 07:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 299.99778 * 3 2 1 6 6 H 1.48498 * 109.47105 * 59.99849 * 3 2 1 7 7 C 1.38808 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 157.08366 * 7 2 1 9 9 N 1.36945 * 119.99551 * 337.08699 * 7 2 1 10 10 C 1.46491 * 120.00024 * 325.20682 * 9 7 2 11 11 C 1.50700 * 109.47112 * 274.99940 * 10 9 7 12 12 C 1.38235 * 120.00196 * 269.72690 * 11 10 9 13 13 C 1.38234 * 120.00075 * 179.81010 * 12 11 10 14 14 C 1.38232 * 120.00042 * 0.41905 * 13 12 11 15 15 C 1.38237 * 119.99959 * 359.81092 * 14 13 12 16 16 C 1.38237 * 120.00117 * 0.02562 * 15 14 13 17 17 S 1.65596 * 119.99785 * 145.20548 * 9 7 2 18 18 O 1.42098 * 104.27783 * 157.19806 * 17 9 7 19 19 O 1.42105 * 104.27823 * 29.34232 * 17 9 7 20 20 C 1.81395 * 104.45309 * 273.26985 * 17 9 7 21 21 C 1.53001 * 109.47610 * 180.02562 * 20 17 9 22 22 H 1.08999 * 109.49071 * 60.02461 * 21 20 17 23 23 C 1.53086 * 109.48332 * 180.02562 * 21 20 17 24 24 C 1.53180 * 109.16280 * 177.58949 * 23 21 20 25 25 C 1.53174 * 109.03761 * 303.01901 * 24 23 21 26 26 C 1.53093 * 109.16028 * 56.98042 * 25 24 23 27 27 O 1.42898 * 109.41586 * 302.38689 * 26 25 24 28 28 H 0.97005 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47645 * 35.00071 * 10 9 7 30 30 H 1.09004 * 109.47288 * 155.00009 * 10 9 7 31 31 H 1.08005 * 119.99743 * 359.97438 * 12 11 10 32 32 H 1.08000 * 120.00194 * 180.20978 * 13 12 11 33 33 H 1.08004 * 120.00394 * 179.79311 * 14 13 12 34 34 H 1.08005 * 119.99885 * 179.97438 * 15 14 13 35 35 H 1.07995 * 119.99900 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47316 * 59.99754 * 20 17 9 37 37 H 1.09007 * 109.47260 * 300.00234 * 20 17 9 38 38 H 1.09005 * 109.52688 * 297.49712 * 23 21 20 39 39 H 1.09006 * 109.52385 * 57.68357 * 23 21 20 40 40 H 1.09008 * 109.54115 * 183.15049 * 24 23 21 41 41 H 1.09000 * 109.54125 * 62.89068 * 24 23 21 42 42 H 1.09006 * 109.52011 * 297.07583 * 25 24 23 43 43 H 1.08993 * 109.57647 * 176.91992 * 25 24 23 44 44 H 1.09005 * 109.47749 * 182.40989 * 26 25 24 45 45 H 1.08996 * 109.48056 * 62.37547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0264 -1.2391 -0.3636 9 7 1.4066 -2.3410 0.4628 10 6 0.4611 -2.2674 1.5793 11 6 1.2176 -2.3127 2.8819 12 6 1.4754 -3.5273 3.4897 13 6 2.1727 -3.5691 4.6825 14 6 2.6046 -2.3958 5.2721 15 6 2.3427 -1.1809 4.6668 16 6 1.6483 -1.1393 3.4722 17 16 1.7455 -3.8015 -0.2404 18 8 1.4221 -4.7561 0.7612 19 8 3.0772 -3.6610 -0.7159 20 6 0.5829 -3.9164 -1.6281 21 6 0.7986 -5.2391 -2.3661 22 1 0.6289 -6.0697 -1.6810 23 6 -0.1820 -5.3360 -3.5377 24 6 0.0804 -6.6343 -4.3071 25 6 1.5410 -6.6552 -4.7682 26 6 2.4550 -6.5074 -3.5491 27 8 2.1378 -5.2954 -2.8617 28 1 -0.4851 0.8401 -0.0004 29 1 -0.1016 -1.3359 1.5182 30 1 -0.2268 -3.1115 1.5291 31 1 1.1343 -4.4437 3.0311 32 1 2.3770 -4.5182 5.1556 33 1 3.1465 -2.4281 6.2058 34 1 2.6798 -0.2641 5.1277 35 1 1.4434 -0.1901 2.9996 36 1 0.7519 -3.0857 -2.3135 37 1 -0.4388 -3.8737 -1.2507 38 1 -1.2039 -5.3376 -3.1583 39 1 -0.0407 -4.4837 -4.2024 40 1 -0.5769 -6.6828 -5.1753 41 1 -0.1089 -7.4882 -3.6566 42 1 1.7171 -5.8296 -5.4578 43 1 1.7521 -7.5997 -5.2695 44 1 3.4946 -6.4787 -3.8756 45 1 2.3075 -7.3546 -2.8793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068897114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:35 Heat of formation + Delta-G solvation = -112.661649 kcal Electronic energy + Delta-G solvation = -28658.740422 eV Core-core repulsion = 24767.405381 eV Total energy + Delta-G solvation = -3891.335041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -40.45834 -40.06582 -37.57434 -37.41209 -36.38191 -34.66243 -33.86930 -33.71487 -31.90993 -31.61109 -28.97713 -27.67169 -25.51841 -25.27838 -23.47958 -23.27288 -22.10339 -21.29829 -20.19590 -18.86520 -18.37020 -17.63029 -17.43037 -17.14203 -16.85945 -16.55651 -16.21669 -15.89524 -15.71408 -15.54195 -15.44262 -15.17446 -14.45225 -14.23856 -14.13511 -13.82817 -13.72225 -13.55678 -13.40294 -13.31138 -13.19381 -12.91370 -12.67866 -12.61563 -12.53521 -12.36192 -12.24935 -12.05996 -12.03088 -11.84967 -11.78395 -11.59941 -11.48652 -11.19395 -11.01330 -10.44609 -9.67114 -9.64316 -9.52167 -8.37712 -6.00334 -0.19399 0.62093 0.65055 1.44938 1.50152 1.62341 2.22900 2.53412 2.65170 2.86362 3.10234 3.32288 3.63307 3.72632 3.82959 3.86583 3.96615 4.06833 4.11414 4.19319 4.19987 4.30101 4.38918 4.44035 4.48543 4.50030 4.60938 4.76130 4.82640 4.83201 4.87695 4.90132 5.00445 5.05171 5.14371 5.21901 5.25849 5.28575 5.32684 5.38675 5.66574 5.71164 5.73276 6.03141 6.16700 6.29549 6.45365 6.85786 7.35014 8.59673 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004469 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.256728 B = 6263.200483 C = 7652.166422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.018 3.982 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.275 4.275 8 H 0.084 0.916 9 N -0.815 5.815 10 C 0.157 3.843 11 C -0.102 4.102 12 C -0.128 4.128 13 C -0.136 4.136 14 C -0.125 4.125 15 C -0.133 4.133 16 C -0.110 4.110 17 S 2.505 3.495 18 O -1.014 7.014 19 O -1.004 7.004 20 C -0.634 4.634 21 C 0.096 3.904 22 H 0.064 0.936 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.151 4.151 26 C 0.041 3.959 27 O -0.408 6.408 28 H 0.281 0.719 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -6.305 -0.899 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.419 4.419 8 H 0.102 0.898 9 N -0.639 5.639 10 C 0.031 3.969 11 C -0.104 4.104 12 C -0.147 4.147 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.129 4.129 17 S 2.609 3.391 18 O -1.004 7.004 19 O -0.995 6.995 20 C -0.758 4.758 21 C 0.037 3.963 22 H 0.081 0.919 23 C -0.179 4.179 24 C -0.160 4.160 25 C -0.188 4.188 26 C -0.035 4.035 27 O -0.328 6.328 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.876 -6.914 -0.676 7.196 hybrid contribution -0.367 0.803 -0.792 1.186 sum -2.243 -6.111 -1.468 6.673 Atomic orbital electron populations 1.69972 1.07008 1.29423 1.42109 1.26154 0.95811 1.02291 0.95037 0.85321 0.79184 0.77982 0.78852 1.19447 1.19753 1.18614 1.19602 0.96106 0.85682 1.40552 0.89825 1.53344 1.54227 1.21965 1.34332 1.20313 0.90456 1.04316 0.81852 1.20500 0.99826 0.93777 0.96312 1.21493 0.99313 0.97724 0.96211 1.21417 0.98729 0.99624 0.95586 1.21435 1.00093 0.91881 1.00852 1.21425 0.99003 0.99232 0.95376 1.21159 0.98294 0.97640 0.95856 1.11325 0.77333 0.75101 0.75345 1.93296 1.86215 1.64083 1.56796 1.93335 1.37043 1.86092 1.82981 1.30741 1.19734 1.03592 1.21774 1.21771 0.84069 0.94468 0.95944 0.91861 1.22170 0.99285 0.99745 0.96695 1.21674 0.96863 0.96573 1.00870 1.22183 0.95146 1.03944 0.97558 1.22945 1.00706 0.86050 0.93751 1.88083 1.29123 1.40762 1.74832 0.90836 0.87488 0.91759 0.86187 0.84254 0.83080 0.83856 0.87037 0.86488 0.84270 0.89451 0.91517 0.89092 0.90851 0.91435 0.87987 0.87846 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.95 11.31 21.65 0.24 -39.70 16 2 C 0.02 0.84 4.99 84.86 0.42 1.26 16 3 Si 0.96 38.12 29.61 68.60 2.03 40.15 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.28 -14.18 9.09 84.03 0.76 -13.41 16 8 H 0.08 4.61 7.37 -2.91 -0.02 4.59 16 9 N -0.82 -40.24 2.75 -347.19 -0.96 -41.20 16 10 C 0.16 7.14 5.03 85.63 0.43 7.57 16 11 C -0.10 -4.39 5.43 -19.86 -0.11 -4.50 16 12 C -0.13 -5.23 9.20 22.27 0.20 -5.02 16 13 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 14 C -0.12 -3.70 10.05 22.27 0.22 -3.47 16 15 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 16 C -0.11 -4.36 9.70 22.27 0.22 -4.14 16 17 S 2.50 122.14 5.14 -56.49 -0.29 121.85 16 18 O -1.01 -50.18 14.83 -127.65 -1.89 -52.08 16 19 O -1.00 -56.45 16.28 -123.51 -2.01 -58.46 16 20 C -0.63 -25.72 5.90 71.98 0.42 -25.29 16 21 C 0.10 3.43 2.69 30.62 0.08 3.51 16 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 23 C -0.14 -3.83 5.42 30.68 0.17 -3.67 16 24 C -0.12 -2.54 6.03 30.71 0.19 -2.36 16 25 C -0.15 -3.20 6.14 30.68 0.19 -3.01 16 26 C 0.04 1.16 6.84 72.01 0.49 1.65 16 27 O -0.41 -15.88 9.45 -142.61 -1.35 -17.22 16 28 H 0.28 12.24 8.31 -92.70 -0.77 11.47 16 29 H 0.11 5.00 5.30 -2.39 -0.01 4.99 16 30 H 0.06 2.77 7.45 -2.38 -0.02 2.75 16 31 H 0.12 5.14 6.53 -2.91 -0.02 5.12 16 32 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 33 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.12 4.97 8.14 -2.39 -0.02 4.95 16 37 H 0.14 5.05 8.14 -2.39 -0.02 5.03 16 38 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.85 374.05 0.89 -64.96 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.97 Total: 40.94 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 4.14 Total: -59.24 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -0.71 Total: -80.90 kcal Atomic # 8 Polarization: -122.51 SS G_CDS: -5.25 Total: -127.76 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 16 Polarization: 122.14 SS G_CDS: -0.29 Total: 121.85 kcal Total: -65.85 0.89 -64.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.699 kcal (2) G-P(sol) polarization free energy of solvation -65.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds