Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00155 * 2 1 4 4 C 1.38755 * 120.05296 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93999 * 180.27973 * 4 3 2 6 6 C 1.38289 * 120.05202 * 359.48967 * 5 4 3 7 7 S 1.76206 * 119.93984 * 180.25736 * 6 5 4 8 8 O 1.42106 * 106.40194 * 23.79242 * 7 6 5 9 9 O 1.42102 * 106.39870 * 156.71090 * 7 6 5 10 10 N 1.65600 * 107.21714 * 270.25186 * 7 6 5 11 11 C 1.46503 * 119.99699 * 270.00113 * 10 7 6 12 12 C 1.50701 * 109.47133 * 95.00354 * 11 10 7 13 13 H 1.08005 * 119.99799 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00008 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47043 * 59.99814 * 16 14 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46967 * 299.99767 * 16 14 12 20 20 C 1.46501 * 119.99895 * 90.00235 * 10 7 6 21 21 C 1.52997 * 109.47037 * 94.99816 * 20 10 7 22 22 C 1.53002 * 117.49963 * 243.74157 * 21 20 10 23 23 C 1.53001 * 117.49757 * 175.08393 * 21 20 10 24 24 C 1.38237 * 120.11494 * 0.50894 * 6 5 4 25 25 C 1.38167 * 120.05858 * 359.74537 * 24 6 5 26 26 C 1.50693 * 120.03230 * 179.97438 * 25 24 6 27 27 H 1.09006 * 109.47043 * 60.00389 * 1 2 3 28 28 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47208 * 300.00726 * 1 2 3 30 30 H 1.08002 * 120.02789 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.96669 * 179.72334 * 5 4 3 32 32 H 1.09002 * 109.46329 * 215.00006 * 11 10 7 33 33 H 1.08990 * 109.47256 * 334.99648 * 11 10 7 34 34 H 0.96998 * 119.99961 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.46751 * 214.99896 * 20 10 7 36 36 H 1.09002 * 109.46907 * 334.99426 * 20 10 7 37 37 H 1.09002 * 115.55130 * 29.42194 * 21 20 10 38 38 H 1.09003 * 117.49678 * 0.02562 * 22 21 20 39 39 H 1.08999 * 117.49418 * 145.02207 * 22 21 20 40 40 H 1.08998 * 117.50001 * 214.97934 * 23 21 20 41 41 H 1.09003 * 117.49686 * 0.02562 * 23 21 20 42 42 H 1.08006 * 119.97237 * 179.77245 * 24 6 5 43 43 H 1.09000 * 109.47146 * 270.02582 * 26 25 24 44 44 H 1.09006 * 109.47104 * 30.02426 * 26 25 24 45 45 H 1.08997 * 109.47215 * 150.02537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6048 -0.0064 6 6 3.3020 3.6757 -0.0010 7 16 4.1020 5.2457 -0.0016 8 8 3.1706 6.1708 0.5423 9 8 5.3976 5.0360 0.5430 10 7 4.3247 5.6817 -1.5836 11 6 5.5536 5.2985 -2.2830 12 6 5.3205 4.0187 -3.0438 13 1 4.3536 3.5386 -3.0094 14 6 6.3414 3.4608 -3.7837 15 7 7.5185 4.0458 -3.8259 16 14 6.0526 1.8741 -4.7262 17 1 4.9626 2.0766 -5.7142 18 1 7.2979 1.4864 -5.4362 19 1 5.6675 0.7982 -3.7779 20 6 3.2927 6.4507 -2.2837 21 6 3.6273 7.9416 -2.2065 22 6 2.6515 8.8465 -1.4516 23 6 2.7277 8.9084 -2.9791 24 6 4.0560 2.5170 -0.0004 25 6 3.4312 1.2847 0.0001 26 6 4.2537 0.0221 0.0002 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 0.2128 2.3204 -0.0014 31 1 1.3341 4.5113 -0.0113 32 1 5.8370 6.0884 -2.9787 33 1 6.3532 5.1494 -1.5574 34 1 8.2368 3.6531 -4.3461 35 1 3.2543 6.1405 -3.3279 36 1 2.3251 6.2706 -1.8153 37 1 4.6885 8.1827 -2.1438 38 1 1.7713 8.3795 -1.0095 39 1 3.0707 9.6830 -0.8925 40 1 3.1970 9.7857 -3.4243 41 1 1.8973 8.4822 -3.5421 42 1 5.1345 2.5751 0.0000 43 1 4.4520 -0.2824 -1.0275 44 1 5.1978 0.2034 0.5140 45 1 3.7063 -0.7681 0.5140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069321709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -63.045827 kcal Electronic energy + Delta-G solvation = -28551.252473 eV Core-core repulsion = 24662.068935 eV Total energy + Delta-G solvation = -3889.183538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.22668 -37.55188 -37.43538 -36.57233 -35.17604 -34.78600 -32.77311 -32.40066 -30.26580 -27.82748 -27.74541 -26.63158 -25.39962 -22.68889 -22.31220 -21.98834 -21.74405 -20.22751 -18.26966 -18.05774 -17.10004 -16.72749 -16.49952 -16.26836 -15.91154 -15.45495 -14.75803 -14.47565 -14.46051 -14.13351 -13.92194 -13.48354 -13.42374 -13.13144 -12.96942 -12.54216 -12.37685 -12.14548 -12.09472 -11.82956 -11.77549 -11.48471 -11.41642 -11.30758 -11.27740 -11.17544 -11.11224 -10.84244 -10.82314 -10.53094 -10.40425 -10.13354 -10.06730 -9.72174 -9.48994 -8.76903 -8.48497 -8.31883 -8.02733 -6.10239 -4.16417 0.99786 1.27376 1.46006 3.12802 3.26404 3.31980 3.33670 3.48917 3.83073 4.17090 4.37739 4.42557 4.67582 4.78309 4.89419 4.96146 5.05816 5.11020 5.23787 5.24292 5.25640 5.31924 5.41801 5.43829 5.60547 5.64635 5.70512 5.86054 5.89518 5.90900 6.01443 6.15623 6.17514 6.19882 6.32699 6.34004 6.40281 6.45584 6.56271 6.69999 6.84070 7.29591 7.34098 7.43403 7.63741 7.86881 8.15777 8.88459 9.49748 10.97688 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.005896 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.911754 B = 4747.604969 C = 6750.598902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.169 3.831 4 C -0.232 4.232 5 C 0.009 3.991 6 C -0.695 4.695 7 S 2.692 3.308 8 O -0.975 6.975 9 O -0.960 6.960 10 N -0.978 5.978 11 C 0.244 3.756 12 C -0.540 4.540 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.164 3.836 21 C -0.165 4.165 22 C -0.175 4.175 23 C -0.181 4.181 24 C 0.037 3.963 25 C -0.138 4.138 26 C -0.105 4.105 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 -2.044 5.584 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.251 4.251 5 C -0.011 4.011 6 C -0.781 4.781 7 S 2.782 3.218 8 O -0.965 6.965 9 O -0.950 6.950 10 N -0.816 5.816 11 C 0.122 3.878 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.038 3.962 21 C -0.185 4.185 22 C -0.212 4.212 23 C -0.219 4.219 24 C 0.018 3.982 25 C -0.140 4.140 26 C -0.161 4.161 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.168 0.832 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.808 -1.818 6.225 14.356 hybrid contribution -0.731 -1.427 -1.114 1.952 sum -13.539 -3.244 5.111 14.831 Atomic orbital electron populations 1.23092 0.78430 1.03911 1.01571 1.86081 1.21372 1.27040 1.87974 1.19040 0.91944 0.84017 0.92724 1.21193 0.99866 0.92326 1.11718 1.20595 0.92462 0.97717 0.90281 1.31095 1.04666 1.22521 1.19839 1.01834 0.73309 0.73423 0.73230 1.93508 1.65085 1.60499 1.77399 1.93543 1.38230 1.86326 1.76921 1.57365 1.28197 1.65575 1.30511 1.19265 0.79635 0.95816 0.93091 1.21512 0.97983 1.08325 1.30090 0.92072 1.24896 0.94959 0.97314 0.96395 1.69916 1.02371 1.39544 1.40858 0.86716 0.77538 0.83955 0.80234 1.20281 1.21162 1.19961 1.20623 0.89183 0.87466 0.98975 1.22867 0.97751 0.93283 1.04572 1.23006 1.02129 1.02425 0.93646 1.22919 1.02730 1.01669 0.94568 1.20734 1.00527 0.89511 0.87393 1.19353 0.90534 0.96559 1.07507 1.20616 0.98860 0.93888 1.02756 0.92422 0.88228 0.92528 0.85070 0.84564 0.93960 0.92884 0.92540 0.89545 0.91570 0.87333 0.88542 0.89359 0.89176 0.88998 0.83210 0.91075 0.91173 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.14 9.54 -19.44 -0.19 -4.33 16 3 C 0.17 2.59 6.66 -39.22 -0.26 2.33 16 4 C -0.23 -3.29 9.04 -39.43 -0.36 -3.64 16 5 C 0.01 0.14 9.51 -39.60 -0.38 -0.24 16 6 C -0.70 -12.80 5.97 -39.56 -0.24 -13.03 16 7 S 2.69 53.76 5.64 -107.50 -0.61 53.16 16 8 O -0.97 -19.15 16.26 -57.17 -0.93 -20.08 16 9 O -0.96 -22.01 15.83 -57.17 -0.90 -22.92 16 10 N -0.98 -19.84 2.77 -115.66 -0.32 -20.16 16 11 C 0.24 5.90 5.44 -5.19 -0.03 5.87 16 12 C -0.54 -13.92 9.38 -34.44 -0.32 -14.25 16 13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 16 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.16 2.83 5.62 -4.04 -0.02 2.80 16 21 C -0.16 -2.62 6.01 -90.62 -0.54 -3.17 16 22 C -0.18 -2.45 10.18 -26.69 -0.27 -2.72 16 23 C -0.18 -2.34 10.25 -26.69 -0.27 -2.62 16 24 C 0.04 0.70 9.17 -39.61 -0.36 0.34 16 25 C -0.14 -2.34 5.89 -104.48 -0.62 -2.95 16 26 C -0.10 -1.54 9.79 36.00 0.35 -1.18 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 31 H 0.14 1.86 7.62 -52.49 -0.40 1.46 16 32 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 36 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16 37 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.10 1.33 8.03 -51.93 -0.42 0.91 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.15 2.89 7.61 -52.48 -0.40 2.49 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -31.46 388.33 -10.62 -42.08 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.82 Total: 4.52 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -2.43 Total: -29.54 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.42 Total: -44.44 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -2.02 Total: -47.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.61 Total: 53.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.46 -10.62 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069321709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.964 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds