Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.92763 * 2 1 4 4 C 1.38111 * 120.07151 * 179.70327 * 3 2 1 5 5 C 1.38890 * 119.92510 * 0.27588 * 4 3 2 6 6 N 1.39846 * 120.06818 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00091 * 187.98428 * 6 5 4 8 8 C 1.50692 * 109.47274 * 72.49411 * 7 6 5 9 9 H 1.08002 * 120.00204 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00127 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99811 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00100 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47228 * 59.99714 * 12 10 8 14 14 H 1.48499 * 109.46885 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47082 * 300.00020 * 12 10 8 16 16 C 1.34776 * 120.00263 * 7.98091 * 6 5 4 17 17 O 1.21559 * 119.99887 * 5.77350 * 16 6 5 18 18 C 1.47825 * 120.00156 * 185.77223 * 16 6 5 19 19 C 1.39724 * 120.07827 * 25.27188 * 18 16 6 20 20 C 1.38045 * 120.14766 * 179.71571 * 19 18 16 21 21 C 1.38103 * 120.29666 * 0.56073 * 20 19 18 22 22 C 1.39669 * 120.14935 * 359.71677 * 21 20 19 23 23 C 1.47861 * 120.07617 * 179.97438 * 22 21 20 24 24 N 1.34782 * 119.99743 * 0.02562 * 23 22 21 25 25 O 1.21546 * 120.00137 * 180.02562 * 23 22 21 26 26 C 1.39312 * 120.07601 * 205.54634 * 18 16 6 27 27 C 1.38885 * 119.85727 * 0.02562 * 5 4 3 28 28 C 1.38107 * 119.92946 * 359.97438 * 27 5 4 29 29 H 1.08993 * 109.47374 * 89.99643 * 1 2 3 30 30 H 1.09000 * 109.47053 * 209.99889 * 1 2 3 31 31 H 1.09005 * 109.47268 * 329.99298 * 1 2 3 32 32 H 1.07998 * 119.96413 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.03423 * 180.29615 * 4 3 2 34 34 H 1.08995 * 109.47400 * 192.49954 * 7 6 5 35 35 H 1.09006 * 109.46836 * 312.49584 * 7 6 5 36 36 H 0.96995 * 120.00016 * 180.02562 * 11 10 8 37 37 H 1.08006 * 119.92025 * 359.97438 * 19 18 16 38 38 H 1.07998 * 119.85353 * 180.25223 * 20 19 18 39 39 H 1.08005 * 119.92899 * 179.69905 * 21 20 19 40 40 H 0.96994 * 119.99811 * 0.02562 * 24 23 22 41 41 H 0.96996 * 119.99366 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.14741 * 359.97438 * 26 18 16 43 43 H 1.08004 * 120.03676 * 179.97438 * 27 5 4 44 44 H 1.08002 * 119.96433 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0062 5 6 4.2739 -0.0001 0.0066 6 7 5.6723 0.0000 0.0134 7 6 6.4057 -1.2560 -0.1623 8 6 6.2938 -1.7068 -1.5959 9 1 5.7328 -1.1165 -2.3054 10 6 6.9076 -2.8728 -2.0019 11 7 7.5903 -3.5918 -1.1379 12 14 6.7694 -3.4311 -3.7792 13 1 7.3462 -2.3928 -4.6705 14 1 7.5127 -4.7043 -3.9572 15 1 5.3398 -3.6397 -4.1227 16 6 6.3454 1.1554 0.1816 17 8 5.7410 2.1800 0.4318 18 6 7.8186 1.1768 0.0617 19 6 8.4726 0.2120 -0.7087 20 6 9.8479 0.2341 -0.8264 21 6 10.5874 1.2017 -0.1751 22 6 9.9469 2.1687 0.6030 23 6 10.7402 3.2036 1.3001 24 7 12.0831 3.2147 1.1846 25 8 10.1815 4.0442 1.9772 26 6 8.5586 2.1557 0.7214 27 6 3.5779 -1.2019 0.0003 28 6 2.1969 -1.1985 -0.0059 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6551 2.1327 -0.0004 33 1 4.1162 2.1383 0.0110 34 1 7.4550 -1.1024 0.0894 35 1 5.9830 -2.0183 0.4923 36 1 8.0223 -4.4119 -1.4236 37 1 7.9005 -0.5504 -1.2167 38 1 10.3482 -0.5116 -1.4264 39 1 11.6634 1.2105 -0.2673 40 1 12.5289 2.5441 0.6439 41 1 12.6035 3.8934 1.6422 42 1 8.0584 2.9014 1.3214 43 1 4.1162 -2.1383 0.0002 44 1 1.6551 -2.1328 -0.0112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069349773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = 8.850667 kcal Electronic energy + Delta-G solvation = -28711.878047 eV Core-core repulsion = 24788.086886 eV Total energy + Delta-G solvation = -3923.791161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 6.73 seconds Orbital eigenvalues (eV) -40.67239 -39.71711 -38.36387 -37.35784 -35.69085 -33.90643 -33.08825 -31.89997 -30.82667 -30.39717 -30.30682 -27.85862 -26.17505 -24.05781 -23.65296 -23.14678 -21.85665 -21.05250 -20.52046 -19.35845 -17.99948 -17.08507 -16.79560 -16.59974 -16.22787 -15.85427 -15.11337 -14.83598 -14.74317 -14.60685 -14.44738 -14.26190 -13.82650 -13.60225 -13.39656 -13.31583 -12.98850 -12.81897 -12.67774 -12.40262 -12.13245 -11.88078 -11.69322 -11.48407 -11.17886 -11.13449 -11.03482 -10.58580 -10.35026 -10.33274 -10.15594 -9.95093 -9.80213 -9.22524 -8.93566 -8.86729 -8.78974 -8.49706 -8.30564 -7.11996 -6.45545 -4.57293 0.91138 1.29808 1.92179 2.03894 2.84860 3.10537 3.16282 3.19779 3.33690 3.39820 3.62315 4.09629 4.14037 4.48697 4.78640 4.81507 4.86007 5.11901 5.13107 5.33501 5.38323 5.58340 5.62110 5.65867 5.69381 5.83372 5.99145 5.99666 6.12312 6.15569 6.18383 6.27330 6.33855 6.52842 6.64940 6.66493 6.71234 6.77275 6.88524 6.99740 7.02675 7.11289 7.17189 7.25392 7.26485 7.48264 7.66627 7.79806 8.03856 8.20957 8.50784 8.66987 9.11359 10.57943 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.004354 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.421714 B = 6428.614711 C = 9142.783746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.168 4.168 5 C 0.169 3.831 6 N -0.528 5.528 7 C 0.204 3.796 8 C -0.547 4.547 9 H 0.069 0.931 10 C 0.073 3.927 11 N -0.877 5.877 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.557 3.443 17 O -0.536 6.536 18 C -0.147 4.147 19 C -0.058 4.058 20 C -0.140 4.140 21 C -0.064 4.064 22 C -0.172 4.172 23 C 0.569 3.431 24 N -0.855 5.855 25 O -0.543 6.543 26 C -0.002 4.002 27 C -0.132 4.132 28 C -0.105 4.105 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.171 0.829 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.272 0.728 37 H 0.203 0.797 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.400 0.600 41 H 0.402 0.598 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 4.347 0.781 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.126 4.126 4 C -0.188 4.188 5 C 0.073 3.927 6 N -0.246 5.246 7 C 0.086 3.914 8 C -0.585 4.585 9 H 0.087 0.913 10 C -0.133 4.133 11 N -0.513 5.513 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.349 3.651 17 O -0.417 6.417 18 C -0.150 4.150 19 C -0.075 4.075 20 C -0.158 4.158 21 C -0.083 4.083 22 C -0.175 4.175 23 C 0.356 3.644 24 N -0.419 5.419 25 O -0.420 6.420 26 C -0.022 4.022 27 C -0.152 4.152 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.187 0.813 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.219 0.781 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.230 0.770 41 H 0.233 0.767 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.588 5.124 1.340 5.895 hybrid contribution 0.598 -0.755 -1.095 1.458 sum 3.186 4.369 0.246 5.413 Atomic orbital electron populations 1.20660 0.92090 1.01847 1.01474 1.19777 0.95427 0.93509 1.04342 1.20855 0.93876 0.96833 1.01081 1.22426 0.94309 0.99815 1.02240 1.17917 0.82307 0.94237 0.98200 1.45799 1.04393 1.09966 1.64484 1.20445 0.93621 0.79354 0.97998 1.21311 1.34528 1.08304 0.94354 0.91305 1.24971 0.94323 0.95601 0.98379 1.69918 1.31749 1.15022 1.34641 0.86514 0.78904 0.78201 0.83874 1.19718 1.20885 1.19707 1.18369 0.87216 0.82916 0.76624 1.90438 1.68370 1.33721 1.49131 1.19821 0.93014 0.98839 1.03351 1.23669 0.95852 0.95575 0.92441 1.21165 0.94289 0.99193 1.01195 1.21438 0.99352 0.93338 0.94216 1.19590 0.94039 0.99224 1.04674 1.18277 0.82225 0.83984 0.79892 1.43734 1.07420 1.35933 1.54785 1.90810 1.71016 1.39450 1.40759 1.21255 0.91958 0.95048 0.93957 1.21040 0.93927 0.97619 1.02649 1.20723 0.93487 0.97035 1.01138 0.92036 0.92237 0.92286 0.86788 0.81250 0.91233 0.93999 0.91864 0.78118 0.84801 0.85911 0.77015 0.76705 0.84090 0.84454 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.01 36.00 0.36 -0.91 16 2 C -0.13 -2.08 5.88 -104.59 -0.62 -2.70 16 3 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 4 C -0.17 -3.35 8.97 -39.39 -0.35 -3.70 16 5 C 0.17 3.53 6.30 -83.72 -0.53 3.00 16 6 N -0.53 -11.31 2.75 -115.80 -0.32 -11.63 16 7 C 0.20 4.51 4.02 -5.20 -0.02 4.49 16 8 C -0.55 -12.73 6.51 -34.44 -0.22 -12.96 16 9 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.71 5.43 -17.82 -0.10 1.61 16 11 N -0.88 -21.25 13.29 55.43 0.74 -20.51 16 12 Si 0.90 18.66 29.54 -169.99 -5.02 13.64 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 C 0.56 11.78 7.39 -12.34 -0.09 11.69 16 17 O -0.54 -11.87 13.12 5.31 0.07 -11.80 16 18 C -0.15 -2.80 5.52 -105.02 -0.58 -3.38 16 19 C -0.06 -1.06 7.44 -39.10 -0.29 -1.35 16 20 C -0.14 -2.09 10.02 -39.70 -0.40 -2.49 16 21 C -0.06 -0.82 9.54 -39.10 -0.37 -1.19 16 22 C -0.17 -2.58 5.87 -105.02 -0.62 -3.19 16 23 C 0.57 8.11 8.05 -12.32 -0.10 8.01 16 24 N -0.85 -7.69 8.82 30.53 0.27 -7.42 16 25 O -0.54 -9.87 17.18 5.33 0.09 -9.78 16 26 C 0.00 -0.04 9.13 -38.77 -0.35 -0.40 16 27 C -0.13 -2.60 8.94 -39.39 -0.35 -2.95 16 28 C -0.11 -1.80 9.69 -39.61 -0.38 -2.18 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.17 3.56 4.73 -55.15 -0.26 3.30 16 34 H 0.07 1.54 4.20 -51.93 -0.22 1.32 16 35 H 0.04 0.98 6.91 -51.93 -0.36 0.62 16 36 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 37 H 0.20 4.15 3.26 -52.48 -0.17 3.98 16 38 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 1.02 6.39 -52.48 -0.34 0.68 16 40 H 0.40 2.46 6.85 -40.82 -0.28 2.18 16 41 H 0.40 2.95 8.93 -40.82 -0.36 2.58 16 42 H 0.14 2.62 7.44 -52.49 -0.39 2.23 16 43 H 0.14 2.82 6.17 -52.48 -0.32 2.50 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -28.78 363.91 -8.87 -37.64 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -4.78 Total: 15.20 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -5.40 Total: -10.82 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.69 Total: -39.56 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.16 Total: -21.58 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.78 -8.87 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069349773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.495 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.73 seconds