Wall clock time and date at job start Tue Mar 31 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99554 * 2 1 4 4 C 1.53001 * 109.46619 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47208 * 65.00598 * 4 3 2 6 6 C 1.46503 * 119.99676 * 274.99787 * 5 4 3 7 7 C 1.50704 * 109.47105 * 274.99547 * 6 5 4 8 8 H 1.07998 * 119.99820 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99828 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99598 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47208 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.46954 * 120.00370 * 11 9 7 14 14 H 1.48503 * 109.46995 * 239.99817 * 11 9 7 15 15 S 1.65603 * 120.00555 * 94.99463 * 5 4 3 16 16 O 1.42102 * 106.39816 * 336.46213 * 15 5 4 17 17 O 1.42091 * 106.40305 * 203.54169 * 15 5 4 18 18 C 1.76201 * 107.21735 * 89.99898 * 15 5 4 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 5 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 5 24 24 H 1.08999 * 109.47234 * 59.99899 * 1 2 3 25 25 H 1.09004 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47109 * 299.99450 * 1 2 3 27 27 H 1.09002 * 109.47230 * 60.00735 * 3 2 1 28 28 H 1.08995 * 109.47512 * 299.99545 * 3 2 1 29 29 H 1.08997 * 109.47488 * 305.00055 * 4 3 2 30 30 H 1.09004 * 109.47358 * 185.00037 * 4 3 2 31 31 H 1.09002 * 109.47296 * 34.99573 * 6 5 4 32 32 H 1.09001 * 109.47330 * 154.99939 * 6 5 4 33 33 H 0.96997 * 120.00423 * 179.97438 * 10 9 7 34 34 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 35 35 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0015 -0.8954 -1.3759 7 6 5.3001 -1.4248 -0.8241 8 1 6.0333 -0.7424 -0.4203 9 6 5.5516 -2.7804 -0.8338 10 7 4.6584 -3.6114 -1.3250 11 14 7.1610 -3.4366 -0.1491 12 1 7.9892 -2.3050 0.3393 13 1 6.8787 -4.3655 0.9747 14 1 7.8946 -4.1613 -1.2178 15 16 4.4473 1.5122 -2.5245 16 8 3.8195 2.7735 -2.3392 17 8 4.2786 0.7246 -3.6950 18 6 6.1793 1.7891 -2.3564 19 6 7.1347 1.0165 -2.8743 20 6 8.4289 1.4324 -2.6101 21 6 8.5230 2.5438 -1.8765 22 17 10.0084 3.2986 -1.3892 23 16 6.9116 3.1267 -1.4800 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9785 2.1765 0.0902 31 1 3.1685 -1.3221 -0.8172 32 1 3.9137 -1.1717 -2.4266 33 1 4.8355 -4.5651 -1.3322 34 1 6.9159 0.1331 -3.4558 35 1 9.2959 0.8960 -2.9663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069351723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:14 Heat of formation + Delta-G solvation = -85.050400 kcal Electronic energy + Delta-G solvation = -23568.608015 eV Core-core repulsion = 19847.124119 eV Total energy + Delta-G solvation = -3721.483895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 339.020 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -37.99050 -37.75520 -36.81189 -36.59564 -35.43252 -35.32242 -32.58552 -29.61094 -29.45108 -26.78667 -25.66890 -24.29130 -22.84784 -21.82150 -20.27506 -18.96188 -17.82811 -17.06795 -16.48318 -16.05478 -15.98794 -15.68906 -15.11674 -15.00215 -14.52796 -14.44181 -13.84348 -13.63783 -13.32587 -12.79518 -12.66550 -12.38224 -12.08360 -11.94286 -11.82923 -11.74373 -11.67019 -11.60149 -11.26429 -11.09012 -10.90077 -10.89563 -10.82598 -10.63613 -10.38807 -10.07500 -9.75808 -9.29174 -9.02229 -8.53083 -8.45011 -8.07290 -6.07193 -4.12967 0.41593 0.86244 1.07241 1.65908 2.07218 2.49440 3.24933 3.33785 3.35822 3.55739 4.15465 4.20081 4.39073 4.93003 5.21330 5.27326 5.32559 5.39537 5.42813 5.53840 5.64960 5.68991 5.75938 5.78695 5.94668 5.95082 6.26129 6.27146 6.49688 7.40646 7.49261 7.54028 7.73923 7.90874 8.19962 8.92095 9.52277 11.00808 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.005804 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.938746 B = 4823.136624 C = 6694.419965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.968 5.968 6 C 0.242 3.758 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.886 5.886 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 S 2.706 3.294 16 O -0.973 6.973 17 O -0.945 6.945 18 C -0.765 4.765 19 C 0.024 3.976 20 C -0.140 4.140 21 C -0.122 4.122 22 Cl -0.013 7.013 23 S 0.236 5.764 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.168 0.832 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 12.336 1.484 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.035 4.035 4 C 0.005 3.995 5 N -0.807 5.807 6 C 0.121 3.879 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 S 2.791 3.209 16 O -0.963 6.963 17 O -0.935 6.935 18 C -0.964 4.964 19 C -0.010 4.010 20 C -0.173 4.173 21 C -0.268 4.268 22 Cl 0.015 6.985 23 S 0.499 5.501 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.185 0.815 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.326 13.609 1.669 13.775 hybrid contribution 2.267 -1.557 0.073 2.750 sum 3.593 12.052 1.741 12.696 Atomic orbital electron populations 1.22710 0.82256 1.02507 0.99159 1.88100 1.18528 1.26957 1.95173 1.23084 0.95024 0.85289 1.00121 1.21175 0.91637 0.97913 0.88785 1.57351 1.76956 1.19362 1.27073 1.19417 0.98403 0.70803 0.99282 1.21601 1.02856 0.92236 1.41253 0.92109 1.24893 0.96630 0.96854 0.95224 1.69943 1.34253 1.03154 1.45115 0.86624 0.83925 0.79107 0.78890 1.19728 1.20934 1.20917 1.01709 0.72305 0.72833 0.74077 1.93526 1.73286 1.42806 1.86731 1.93570 1.84469 1.69737 1.45750 1.36405 1.31183 1.09919 1.18868 1.19906 0.89777 0.97461 0.93830 1.20458 0.99436 0.96236 1.01212 1.25824 0.93237 1.01077 1.06656 1.98367 1.29603 1.80428 1.90083 1.84009 0.92046 1.23561 1.50453 0.94550 0.89802 0.94751 0.92891 0.93070 0.88703 0.90140 0.91850 0.93237 0.92717 0.81475 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.56 9.02 -35.23 -0.32 -6.88 16 3 C 0.04 0.68 6.28 37.16 0.23 0.91 16 4 C 0.13 2.21 5.79 -4.04 -0.02 2.19 16 5 N -0.97 -19.46 2.76 -115.66 -0.32 -19.78 16 6 C 0.24 5.89 5.27 -5.19 -0.03 5.86 16 7 C -0.54 -13.86 9.38 -34.44 -0.32 -14.18 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 11 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 S 2.71 52.67 5.79 -107.50 -0.62 52.05 16 16 O -0.97 -18.65 16.88 -57.17 -0.97 -19.62 16 17 O -0.94 -21.09 16.35 -57.17 -0.93 -22.02 16 18 C -0.77 -13.30 6.57 29.02 0.19 -13.11 16 19 C 0.02 0.39 9.84 -41.20 -0.41 -0.01 16 20 C -0.14 -2.02 10.13 -41.15 -0.42 -2.44 16 21 C -0.12 -1.71 7.10 29.08 0.21 -1.51 16 22 Cl -0.01 -0.16 29.29 -51.86 -1.52 -1.68 16 23 S 0.24 3.46 23.22 -107.50 -2.50 0.96 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 30 H 0.08 1.13 7.61 -51.93 -0.40 0.74 16 31 H 0.06 1.65 6.60 -51.93 -0.34 1.30 16 32 H 0.05 1.32 6.91 -51.93 -0.36 0.96 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.17 2.79 8.05 -52.49 -0.42 2.36 16 35 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -30.84 346.46 -9.81 -40.65 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.02 Total: -1.07 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 0.45 Total: -19.06 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.42 Total: -44.11 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.22 Total: -48.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 56.13 SS G_CDS: -3.12 Total: 53.01 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.84 -9.81 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.404 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds