Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00144 * 2 1 4 4 C 1.52994 * 109.47718 * 180.02562 * 3 2 1 5 5 N 1.46510 * 109.47050 * 64.99816 * 4 3 2 6 6 C 1.46497 * 120.00027 * 275.00489 * 5 4 3 7 7 C 1.50696 * 109.47212 * 274.99643 * 6 5 4 8 8 H 1.07998 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99972 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00218 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99941 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47017 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47298 * 120.00170 * 11 9 7 14 14 H 1.48506 * 109.46911 * 240.00128 * 11 9 7 15 15 S 1.65606 * 119.99633 * 95.00150 * 5 4 3 16 16 O 1.42099 * 106.40254 * 336.46617 * 15 5 4 17 17 O 1.42101 * 106.40043 * 203.54329 * 15 5 4 18 18 C 1.76200 * 107.21371 * 90.00269 * 15 5 4 19 19 C 1.32566 * 119.99570 * 115.00024 * 18 15 5 20 20 C 1.47812 * 119.99780 * 179.72007 * 19 18 15 21 21 C 1.39539 * 120.14216 * 359.97438 * 20 19 18 22 22 C 1.37972 * 119.85557 * 179.76571 * 21 20 19 23 23 C 1.38340 * 120.14390 * 0.51331 * 22 21 20 24 24 C 1.50700 * 119.85778 * 179.76597 * 23 22 21 25 25 C 1.38350 * 120.28389 * 359.73694 * 23 22 21 26 26 C 1.37968 * 120.14181 * 0.02562 * 25 23 22 27 27 H 1.09010 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47148 * 299.99625 * 1 2 3 29 29 H 1.08998 * 109.47254 * 59.99961 * 1 2 3 30 30 H 1.09001 * 109.47181 * 59.99831 * 3 2 1 31 31 H 1.09006 * 109.47325 * 300.00253 * 3 2 1 32 32 H 1.09002 * 109.47175 * 305.00685 * 4 3 2 33 33 H 1.09000 * 109.47704 * 185.00171 * 4 3 2 34 34 H 1.08996 * 109.47312 * 35.00425 * 6 5 4 35 35 H 1.09005 * 109.46505 * 154.99540 * 6 5 4 36 36 H 0.96996 * 120.00298 * 179.97438 * 10 9 7 37 37 H 1.08001 * 120.00473 * 294.99514 * 18 15 5 38 38 H 1.08002 * 120.00489 * 0.02562 * 19 18 15 39 39 H 1.08001 * 120.06851 * 0.02562 * 21 20 19 40 40 H 1.08007 * 119.92881 * 180.25164 * 22 21 20 41 41 H 1.09000 * 109.46827 * 269.97579 * 24 23 22 42 42 H 1.08994 * 109.47332 * 29.97529 * 24 23 22 43 43 H 1.09006 * 109.47208 * 149.97767 * 24 23 22 44 44 H 1.08004 * 119.92793 * 179.97438 * 25 23 22 45 45 H 1.07998 * 120.06887 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0004 -0.8950 -1.3782 7 6 5.2993 -1.4246 -0.8277 8 1 6.0329 -0.7423 -0.4243 9 6 5.5512 -2.7801 -0.8390 10 7 4.6582 -3.6108 -1.3307 11 14 7.1612 -3.4366 -0.1559 12 1 7.9893 -2.3052 0.3334 13 1 6.8798 -4.3667 0.9671 14 1 7.8945 -4.1598 -1.2257 15 16 4.4453 1.5131 -2.5264 16 8 3.8177 2.7743 -2.3401 17 8 4.2756 0.7258 -3.6971 18 6 6.1774 1.7899 -2.3596 19 6 7.0158 1.3086 -3.2666 20 6 8.4684 1.5460 -3.1300 21 6 8.9602 2.2768 -2.0478 22 6 10.3175 2.4907 -1.9235 23 6 11.1894 1.9916 -2.8746 24 6 12.6703 2.2336 -2.7353 25 6 10.7078 1.2707 -3.9527 26 6 9.3531 1.0456 -4.0860 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1678 -1.3219 -0.8192 35 1 3.9117 -1.1708 -2.4291 36 1 4.8355 -4.5644 -1.3390 37 1 6.5560 2.3516 -1.5184 38 1 6.6372 0.7472 -4.1080 39 1 8.2801 2.6704 -1.3069 40 1 10.6999 3.0527 -1.0842 41 1 12.9361 3.1613 -3.2421 42 1 12.9283 2.3099 -1.6790 43 1 13.2178 1.4047 -3.1840 44 1 11.3936 0.8840 -4.6920 45 1 8.9783 0.4831 -4.9283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069352005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -78.567943 kcal Electronic energy + Delta-G solvation = -27558.065335 eV Core-core repulsion = 23668.208708 eV Total energy + Delta-G solvation = -3889.856627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.44676 -37.69749 -36.58813 -35.32312 -35.22018 -34.78352 -32.52330 -31.44003 -30.90798 -29.45313 -26.82595 -26.71363 -25.61234 -23.12334 -22.79066 -22.32527 -21.69072 -20.13526 -18.01402 -17.23353 -16.79375 -16.46320 -16.02037 -15.89650 -15.57332 -15.23441 -15.00020 -14.85549 -14.47840 -14.37324 -13.95978 -13.66575 -13.50003 -13.26970 -12.67412 -12.52871 -12.47641 -12.25132 -12.13593 -11.98445 -11.87177 -11.61547 -11.53313 -11.33430 -11.17746 -11.03447 -10.97463 -10.84832 -10.67135 -10.43298 -10.34816 -10.29292 -9.95339 -9.67825 -9.24081 -9.00922 -8.40077 -8.30766 -7.94557 -6.01804 -4.06973 0.62828 1.16321 1.36315 2.24617 3.28526 3.36605 3.39530 3.68315 3.83570 4.21432 4.35021 4.43955 4.64699 4.69636 4.84208 4.96522 5.00969 5.15937 5.32594 5.34853 5.37298 5.38777 5.44602 5.49024 5.56484 5.59149 5.62472 5.69799 5.73610 5.82743 5.93502 5.98174 5.98670 6.18732 6.23723 6.34345 6.36392 6.47788 6.58642 6.76644 6.91343 7.51915 7.57143 7.59629 7.81558 7.97281 8.26762 8.97891 9.57818 11.06191 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.004097 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.022594 B = 6832.857853 C = 8536.656201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.133 3.867 5 N -0.975 5.975 6 C 0.244 3.756 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 S 2.678 3.322 16 O -0.984 6.984 17 O -0.962 6.962 18 C -0.731 4.731 19 C 0.045 3.955 20 C -0.084 4.084 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.262 0.738 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 12.003 -0.400 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.814 5.814 6 C 0.123 3.877 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.715 3.285 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 S 2.769 3.231 16 O -0.974 6.974 17 O -0.953 6.953 18 C -0.836 4.836 19 C 0.025 3.975 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.145 4.145 23 C -0.079 4.079 24 C -0.172 4.172 25 C -0.145 4.145 26 C -0.106 4.106 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.143 0.857 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.104 11.948 -1.074 13.460 hybrid contribution 1.440 -0.383 0.934 1.758 sum 7.544 11.565 -0.141 13.808 Atomic orbital electron populations 1.22703 0.82363 1.02445 0.99108 1.88101 1.18441 1.27041 1.95157 1.23101 0.95276 0.85201 0.99988 1.21141 0.91502 0.97902 0.88865 1.57302 1.78071 1.19196 1.26784 1.19344 0.98110 0.71124 0.99146 1.21625 1.02851 0.92226 1.41036 0.92194 1.24891 0.96589 0.96885 0.95306 1.69947 1.34256 1.03084 1.45314 0.86618 0.84005 0.79044 0.78823 1.19824 1.20946 1.20977 1.02104 0.74403 0.72747 0.73824 1.93515 1.74574 1.42749 1.86559 1.93543 1.85610 1.69909 1.46222 1.34020 1.27275 1.13696 1.08628 1.21925 0.91168 0.88444 0.95914 1.19253 0.93261 0.99913 0.96132 1.21408 0.95485 0.96721 0.96877 1.20976 0.92974 1.01238 0.99332 1.20057 0.96063 0.97051 0.94705 1.20816 0.91545 1.02184 1.02612 1.20978 0.95330 0.99993 0.98227 1.21407 0.93073 0.97809 0.98261 0.89853 0.94807 0.94589 0.93074 0.93126 0.88981 0.90037 0.92159 0.93329 0.92803 0.82974 0.83883 0.85367 0.85820 0.91106 0.91476 0.91445 0.85723 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.79 9.02 -35.23 -0.32 -7.11 16 3 C 0.04 0.70 6.28 37.15 0.23 0.93 16 4 C 0.13 2.30 5.79 -4.04 -0.02 2.28 16 5 N -0.97 -20.24 2.76 -115.66 -0.32 -20.56 16 6 C 0.24 6.17 5.27 -5.20 -0.03 6.14 16 7 C -0.54 -14.39 9.38 -34.44 -0.32 -14.72 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 11 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 S 2.68 53.11 5.80 -107.50 -0.62 52.49 16 16 O -0.98 -19.68 16.99 -57.17 -0.97 -20.65 16 17 O -0.96 -21.82 15.44 -57.17 -0.88 -22.70 16 18 C -0.73 -12.77 9.74 28.82 0.28 -12.49 16 19 C 0.05 0.78 9.42 -37.57 -0.35 0.42 16 20 C -0.08 -1.30 5.87 -105.01 -0.62 -1.91 16 21 C -0.09 -1.23 9.40 -39.19 -0.37 -1.59 16 22 C -0.13 -1.54 9.68 -39.64 -0.38 -1.93 16 23 C -0.08 -0.90 5.89 -104.54 -0.62 -1.51 16 24 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 25 C -0.13 -1.50 9.68 -39.64 -0.38 -1.88 16 26 C -0.09 -1.18 9.79 -39.20 -0.38 -1.56 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.62 8.11 -51.93 -0.42 1.19 16 33 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 34 H 0.06 1.62 6.60 -51.93 -0.34 1.28 16 35 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.15 2.31 6.04 -52.49 -0.32 1.99 16 38 H 0.14 2.40 7.21 -52.49 -0.38 2.02 16 39 H 0.13 1.67 6.17 -52.49 -0.32 1.34 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -33.76 390.79 -9.83 -43.59 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.73 Total: 2.98 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.59 Total: -25.12 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.42 Total: -45.65 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -2.17 Total: -50.47 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.62 Total: 52.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.76 -9.83 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069352005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.978 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds