Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38946 * 119.67025 * 2 1 4 4 C 1.36443 * 120.61111 * 179.74076 * 3 2 1 5 5 C 1.40101 * 119.82912 * 0.25730 * 4 3 2 6 6 C 1.41593 * 133.37253 * 179.97438 * 5 4 3 7 7 C 1.35865 * 107.72377 * 180.02562 * 6 5 4 8 8 C 1.47063 * 125.43042 * 179.97438 * 7 6 5 9 9 O 1.21643 * 119.99819 * 348.19914 * 8 7 6 10 10 N 1.34773 * 120.00032 * 168.19157 * 8 7 6 11 11 C 1.46499 * 120.00088 * 2.40097 * 10 8 7 12 12 C 1.50707 * 109.47384 * 82.73069 * 11 10 8 13 13 H 1.07992 * 119.99675 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99972 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99826 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99891 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47299 * 119.99773 * 16 14 12 19 19 H 1.48496 * 109.47407 * 239.99923 * 16 14 12 20 20 C 1.46498 * 120.00085 * 182.39355 * 10 8 7 21 21 C 1.50696 * 109.47215 * 90.00318 * 20 10 8 22 22 C 1.34519 * 125.79085 * 89.71100 * 21 20 10 23 23 C 1.41376 * 106.84197 * 179.89328 * 22 21 20 24 24 C 1.34505 * 106.84445 * 0.37690 * 23 22 21 25 25 O 1.34301 * 125.79243 * 270.02860 * 21 20 10 26 26 N 1.38146 * 109.13886 * 359.97438 * 7 6 5 27 27 H 0.97002 * 125.60322 * 180.02562 * 26 7 6 28 28 C 1.37481 * 108.78966 * 0.02562 * 26 7 6 29 29 C 1.37675 * 119.68003 * 180.27515 * 2 1 3 30 30 H 1.08997 * 109.47073 * 90.00374 * 1 2 3 31 31 H 1.09002 * 109.46880 * 210.00339 * 1 2 3 32 32 H 1.08997 * 109.47634 * 329.99565 * 1 2 3 33 33 H 1.07997 * 119.69543 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.08332 * 180.23219 * 4 3 2 35 35 H 1.07993 * 126.13863 * 359.97438 * 6 5 4 36 36 H 1.08999 * 109.47407 * 202.73314 * 11 10 8 37 37 H 1.09000 * 109.47305 * 322.72955 * 11 10 8 38 38 H 0.97001 * 119.99795 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47662 * 210.00407 * 20 10 8 40 40 H 1.09000 * 109.47044 * 330.00608 * 20 10 8 41 41 H 1.08001 * 126.57698 * 0.03746 * 22 21 20 42 42 H 1.08003 * 126.57539 * 180.17009 * 23 22 21 43 43 H 1.08000 * 125.79690 * 179.75458 * 24 23 22 44 44 H 1.07994 * 120.09223 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2073 0.0000 4 6 3.5590 1.2297 0.0053 5 6 4.2757 0.0259 0.0054 6 6 5.6576 -0.2830 0.0095 7 6 5.7788 -1.6362 0.0067 8 6 7.0485 -2.3784 0.0088 9 8 8.0946 -1.7946 -0.2019 10 7 7.0529 -3.7054 0.2445 11 6 5.7888 -4.4178 0.4463 12 6 5.1827 -4.7545 -0.8918 13 1 5.6883 -4.4662 -1.8014 14 6 3.9821 -5.4296 -0.9545 15 7 3.3662 -5.7801 0.1534 16 14 3.2305 -5.8462 -2.6130 17 1 4.1135 -5.3448 -3.6967 18 1 3.0846 -7.3190 -2.7344 19 1 1.8957 -5.2056 -2.7266 20 6 8.3219 -4.4354 0.2987 21 6 8.8402 -4.4376 1.7137 22 6 8.5649 -5.3624 2.6510 23 6 9.2564 -4.9770 3.8222 24 6 9.9063 -3.8353 3.5334 25 8 9.6505 -3.5133 2.2548 26 7 4.5194 -2.2039 0.0013 27 1 4.3286 -3.1549 -0.0012 28 6 3.5809 -1.1992 0.0003 29 6 2.1887 -1.1961 -0.0057 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6444 2.1365 0.0004 34 1 4.0849 2.1730 0.0091 35 1 6.4694 0.4292 0.0134 36 1 5.9743 -5.3365 1.0027 37 1 5.1011 -3.7856 1.0080 38 1 2.5218 -6.2554 0.1092 39 1 8.1649 -5.4621 -0.0323 40 1 9.0482 -3.9505 -0.3535 41 1 7.9379 -6.2335 2.5309 42 1 9.2594 -5.4975 4.7686 43 1 10.5281 -3.2728 4.2140 44 1 1.6450 -2.1292 -0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069432564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = 51.048236 kcal Electronic energy + Delta-G solvation = -29134.941217 eV Core-core repulsion = 25212.979879 eV Total energy + Delta-G solvation = -3921.961337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 9.56 seconds Orbital eigenvalues (eV) -42.26336 -41.10935 -38.94343 -36.74878 -35.61797 -33.28406 -32.64433 -32.14765 -30.79524 -30.04168 -28.87588 -27.62781 -26.67673 -25.23313 -23.50553 -22.59249 -21.44752 -21.00804 -20.49166 -20.09721 -19.07122 -17.31899 -17.09409 -16.59005 -16.49609 -16.01034 -15.34251 -15.07595 -14.83402 -14.71448 -14.35923 -14.13768 -13.76409 -13.49637 -13.26895 -13.02001 -12.86899 -12.63347 -12.57039 -12.51045 -12.42292 -12.27020 -11.90736 -11.55632 -11.49455 -11.31733 -11.17279 -10.97303 -10.72163 -10.53040 -10.38593 -10.12251 -9.67276 -9.55306 -9.30450 -8.96907 -8.32417 -8.13524 -7.66663 -7.17189 -6.58321 -4.72166 1.26826 1.93573 2.09213 2.60914 2.82090 3.01808 3.12372 3.17216 3.28442 3.63801 3.89530 3.97499 4.10405 4.29949 4.73131 4.96727 5.05867 5.17272 5.21684 5.27508 5.32239 5.47395 5.53867 5.65871 5.77589 5.81458 5.85655 5.89448 6.02891 6.03137 6.07778 6.17447 6.24962 6.27269 6.34727 6.41950 6.47975 6.72447 6.75208 6.88506 6.96718 7.05694 7.20633 7.21915 7.39020 7.42900 7.55162 7.63325 7.93450 8.33554 8.41677 8.69028 8.99354 10.44495 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.004541 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.280330 B = 6164.553145 C = 8085.387790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.066 4.066 5 C -0.126 4.126 6 C -0.141 4.141 7 C 0.040 3.960 8 C 0.585 3.415 9 O -0.544 6.544 10 N -0.591 5.591 11 C 0.216 3.784 12 C -0.562 4.562 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.879 5.879 16 Si 0.899 3.101 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.197 3.803 21 C -0.019 4.019 22 C -0.201 4.201 23 C -0.217 4.217 24 C -0.048 4.048 25 O -0.166 6.166 26 N -0.549 5.549 27 H 0.453 0.547 28 C 0.105 3.895 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.274 0.726 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.198 0.802 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 5.178 3.692 6.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.174 4.174 4 C -0.084 4.084 5 C -0.131 4.131 6 C -0.168 4.168 7 C -0.073 4.073 8 C 0.374 3.626 9 O -0.423 6.423 10 N -0.321 5.321 11 C 0.095 3.905 12 C -0.601 4.601 13 H 0.091 0.909 14 C -0.139 4.139 15 N -0.515 5.515 16 Si 0.725 3.275 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C 0.073 3.927 21 C -0.071 4.071 22 C -0.221 4.221 23 C -0.237 4.237 24 C -0.117 4.117 25 O -0.061 6.061 26 N -0.166 5.166 27 H 0.313 0.687 28 C -0.009 4.009 29 C -0.142 4.142 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.214 0.786 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.517 5.330 3.493 6.550 hybrid contribution -0.696 -1.087 -0.462 1.371 sum 0.821 4.243 3.031 5.278 Atomic orbital electron populations 1.20726 0.91513 1.02332 1.01927 1.19471 0.95369 0.92307 1.00525 1.20351 0.93872 0.96877 1.06288 1.20253 0.93543 0.95959 0.98670 1.18201 0.93049 0.92915 1.08912 1.20675 0.95041 0.93048 1.08038 1.20056 0.85088 0.92857 1.09339 1.17319 0.87035 0.81686 0.76607 1.90752 1.31888 1.68770 1.50861 1.48137 1.07997 1.07119 1.68878 1.19908 0.79578 0.93490 0.97490 1.21663 1.06560 1.38956 0.92917 0.90914 1.25072 0.96705 0.94356 0.97733 1.69936 1.17052 1.37607 1.26885 0.86379 0.79402 0.78668 0.83087 1.19143 1.20206 1.20229 1.19738 0.86078 0.99135 0.87720 1.23154 0.96275 0.89777 0.97897 1.21669 1.04826 1.02600 0.92971 1.21791 1.02825 0.98862 1.00179 1.23994 1.04503 0.98810 0.84384 1.84107 1.53048 1.44882 1.24047 1.44467 1.03030 1.11333 1.57794 0.68713 1.18508 0.91187 0.88548 1.02660 1.19959 0.90302 0.98161 1.05810 0.91560 0.91791 0.91836 0.86653 0.86453 0.83611 0.93051 0.94094 0.91653 0.86778 0.88650 0.83371 0.83786 0.78567 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.99 36.00 0.36 -0.91 16 2 C -0.07 -1.14 5.88 -104.57 -0.61 -1.76 16 3 C -0.15 -2.24 9.61 -39.97 -0.38 -2.62 16 4 C -0.07 -1.03 10.06 -39.53 -0.40 -1.43 16 5 C -0.13 -2.38 6.16 -106.93 -0.66 -3.04 16 6 C -0.14 -2.77 10.55 -39.15 -0.41 -3.19 16 7 C 0.04 0.86 6.56 -82.29 -0.54 0.32 16 8 C 0.58 12.93 7.57 -12.68 -0.10 12.83 16 9 O -0.54 -12.63 16.43 5.24 0.09 -12.55 16 10 N -0.59 -12.29 2.46 -177.84 -0.44 -12.73 16 11 C 0.22 4.81 4.72 -5.19 -0.02 4.79 16 12 C -0.56 -13.34 7.32 -34.44 -0.25 -13.59 16 13 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.07 1.61 5.06 -17.82 -0.09 1.52 16 15 N -0.88 -21.62 13.29 55.43 0.74 -20.89 16 16 Si 0.90 19.14 29.54 -169.99 -5.02 14.11 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.20 3.52 5.92 -5.20 -0.03 3.49 16 21 C -0.02 -0.34 6.90 -35.63 -0.25 -0.58 16 22 C -0.20 -3.24 10.81 -39.70 -0.43 -3.66 16 23 C -0.22 -3.08 10.91 -39.71 -0.43 -3.51 16 24 C -0.05 -0.68 12.09 29.41 0.36 -0.33 16 25 O -0.17 -2.93 10.65 5.70 0.06 -2.87 16 26 N -0.55 -11.99 4.85 -7.36 -0.04 -12.02 16 27 H 0.45 10.38 3.22 -40.82 -0.13 10.25 16 28 C 0.10 2.12 7.25 -83.98 -0.61 1.51 16 29 C -0.12 -2.21 9.71 -39.42 -0.38 -2.59 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 36 H 0.05 1.17 8.02 -51.93 -0.42 0.75 16 37 H 0.04 0.98 5.13 -51.93 -0.27 0.72 16 38 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 39 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 40 H 0.10 1.69 7.39 -51.93 -0.38 1.30 16 41 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -28.01 374.26 -9.24 -37.25 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -5.38 Total: 16.79 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -4.89 Total: -12.74 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.26 Total: -45.64 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.15 Total: -15.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.01 -9.24 -37.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069432564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.298 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.56 seconds