Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47514 * 2 1 4 4 C 1.50703 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.38358 * 119.84948 * 90.00534 * 4 3 2 6 6 C 1.37957 * 120.14240 * 180.02562 * 5 4 3 7 7 C 1.39581 * 119.85261 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.14258 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00091 * 23.12771 * 8 7 6 10 10 N 1.34771 * 119.99754 * 203.12515 * 8 7 6 11 11 C 1.46494 * 120.00200 * 1.69597 * 10 8 7 12 12 C 1.50706 * 109.47352 * 259.48177 * 11 10 8 13 13 H 1.07997 * 119.99757 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00120 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00272 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47489 * 59.99934 * 16 14 12 18 18 H 1.48499 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47095 * 299.99746 * 16 14 12 20 20 C 1.46505 * 119.99753 * 181.69850 * 10 8 7 21 21 C 1.50705 * 109.46650 * 269.99642 * 20 10 8 22 22 C 1.38674 * 120.41476 * 90.00727 * 21 20 10 23 23 C 1.38631 * 118.41810 * 179.97438 * 22 21 20 24 24 C 1.38227 * 119.15891 * 0.24865 * 23 22 21 25 25 N 1.31852 * 120.76621 * 359.49721 * 24 23 22 26 26 C 1.31887 * 121.72316 * 0.49716 * 25 24 23 27 27 C 1.39574 * 119.71302 * 0.25467 * 7 6 5 28 28 C 1.37966 * 119.84665 * 359.47110 * 27 7 6 29 29 H 1.08999 * 109.46851 * 299.99627 * 1 2 3 30 30 H 1.08998 * 109.47159 * 59.99459 * 1 2 3 31 31 H 1.08995 * 109.47655 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46778 * 240.00471 * 2 1 3 33 33 H 1.08998 * 109.47159 * 120.00540 * 2 1 3 34 34 H 1.08999 * 109.46757 * 60.00316 * 3 2 1 35 35 H 1.08998 * 109.47349 * 300.00425 * 3 2 1 36 36 H 1.08001 * 119.93209 * 0.02562 * 5 4 3 37 37 H 1.08006 * 120.07617 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47320 * 19.48626 * 11 10 8 39 39 H 1.09001 * 109.47273 * 139.48647 * 11 10 8 40 40 H 0.96999 * 120.00132 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.47267 * 150.00430 * 20 10 8 42 42 H 1.08991 * 109.47209 * 29.99879 * 20 10 8 43 43 H 1.07994 * 120.79051 * 359.95052 * 22 21 20 44 44 H 1.07995 * 120.41730 * 179.97438 * 23 22 21 45 45 H 1.08005 * 119.61123 * 179.74954 * 24 23 22 46 46 H 1.07997 * 119.61580 * 179.75279 * 26 25 24 47 47 H 1.07991 * 120.07767 * 179.72883 * 27 7 6 48 48 H 1.08004 * 119.92451 * 180.27829 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2352 1.4427 -1.2010 6 6 5.6148 1.4421 -1.2086 7 6 6.3163 1.4406 -0.0019 8 6 7.7947 1.4394 -0.0026 9 8 8.4024 1.8530 -0.9706 10 7 8.4687 0.9797 1.0702 11 6 7.7368 0.4469 2.2219 12 6 7.6759 1.4921 3.3059 13 1 8.1360 2.4570 3.1520 14 6 7.0319 1.2169 4.4935 15 7 6.4712 0.0421 4.6807 16 14 6.9558 2.5128 5.8367 17 1 6.2593 3.7191 5.3221 18 1 6.2140 1.9727 7.0043 19 1 8.3344 2.8767 6.2521 20 6 9.9333 1.0130 1.0846 21 6 10.4705 -0.2732 0.5115 22 6 10.7205 -0.3857 -0.8479 23 6 11.2149 -1.5876 -1.3305 24 6 11.4357 -2.6281 -0.4478 25 7 11.1909 -2.4837 0.8398 26 6 10.7207 -1.3549 1.3340 27 6 5.6159 1.4345 1.2054 28 6 4.2363 1.4408 1.1990 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6913 1.4433 -2.1340 37 1 6.1509 1.4418 -2.1462 38 1 6.7248 0.1797 1.9174 39 1 8.2482 -0.4386 2.5995 40 1 6.0178 -0.1513 5.5161 41 1 10.2841 1.1282 2.1101 42 1 10.2835 1.8525 0.4842 43 1 10.5342 0.4431 -1.5147 44 1 11.4207 -1.7107 -2.3835 45 1 11.8168 -3.5690 -0.8165 46 1 10.5287 -1.2753 2.3938 47 1 6.1527 1.4289 2.1425 48 1 3.6931 1.4406 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069453869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = 33.320265 kcal Electronic energy + Delta-G solvation = -29065.248209 eV Core-core repulsion = 25278.351224 eV Total energy + Delta-G solvation = -3786.896985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.21200 -39.55281 -38.04478 -35.52107 -34.89516 -33.29870 -32.21607 -31.52471 -30.65533 -30.30782 -27.74457 -27.03032 -25.59446 -23.45356 -23.07472 -22.54282 -22.03954 -21.60709 -20.60113 -19.00186 -17.00014 -16.81115 -16.48096 -16.01206 -15.83305 -15.36190 -15.17719 -14.99072 -14.67003 -14.15397 -14.03351 -13.78160 -13.57255 -13.44394 -13.11926 -13.03984 -12.97483 -12.72511 -12.48800 -12.26232 -11.98457 -11.94595 -11.69873 -11.43876 -11.20138 -11.14701 -11.05704 -10.87763 -10.73859 -10.60235 -10.35690 -9.98092 -9.68025 -9.58519 -9.22417 -9.15873 -8.80502 -8.70611 -8.33940 -8.09497 -7.84594 -6.37131 -4.47857 1.32434 1.45134 1.54986 1.96968 3.15280 3.21273 3.23565 3.45832 3.76402 4.16226 4.24097 4.41039 4.69569 4.89997 4.92937 4.98921 5.04635 5.13535 5.18957 5.23826 5.31109 5.34912 5.39657 5.48080 5.56395 5.63435 5.67506 5.79273 5.84163 5.90760 5.98633 5.99862 6.08027 6.08450 6.17943 6.31157 6.33082 6.37627 6.47163 6.56435 6.61871 6.67067 6.88320 6.96048 7.06481 7.10541 7.19353 7.37082 7.55841 7.59958 7.82128 8.20128 8.21819 8.61539 8.89442 9.20531 10.66696 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.007912 B = 0.004277 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.054072 B = 6544.991622 C = 8737.412201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.067 4.067 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.559 3.441 9 O -0.572 6.572 10 N -0.584 5.584 11 C 0.207 3.793 12 C -0.549 4.549 13 H 0.067 0.933 14 C 0.072 3.928 15 N -0.876 5.876 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.162 3.838 21 C -0.145 4.145 22 C -0.056 4.056 23 C -0.182 4.182 24 C 0.089 3.911 25 N -0.490 5.490 26 C 0.115 3.885 27 C -0.097 4.097 28 C -0.133 4.133 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.271 0.729 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.149 0.851 46 H 0.158 0.842 47 H 0.213 0.787 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -0.941 -8.417 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.118 4.118 4 C -0.068 4.068 5 C -0.166 4.166 6 C -0.086 4.086 7 C -0.147 4.147 8 C 0.349 3.651 9 O -0.454 6.454 10 N -0.312 5.312 11 C 0.088 3.912 12 C -0.587 4.587 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.512 5.512 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.038 3.962 21 C -0.148 4.148 22 C -0.082 4.082 23 C -0.202 4.202 24 C -0.068 4.068 25 N -0.198 5.198 26 C -0.042 4.042 27 C -0.114 4.114 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.176 0.824 47 H 0.229 0.771 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.401 -1.565 -8.170 8.658 hybrid contribution -0.332 1.222 0.178 1.278 sum -2.732 -0.343 -7.992 8.453 Atomic orbital electron populations 1.21784 0.95971 1.01488 1.01621 1.21514 0.95296 0.96298 1.02651 1.20643 0.91396 0.97214 1.02502 1.20075 0.95240 0.97881 0.93580 1.20746 0.93722 1.05001 0.97149 1.21105 0.93754 0.96454 0.97242 1.19914 0.92989 1.07322 0.94435 1.18372 0.87341 0.77164 0.82181 1.90625 1.70142 1.49864 1.34751 1.48078 1.05197 1.60068 1.17872 1.20379 0.94009 0.94717 0.82063 1.21375 1.37136 1.00754 0.99405 0.91459 1.24999 0.94634 0.95674 0.98137 1.69925 1.34146 1.20852 1.26289 0.86557 0.78696 0.81564 0.80872 1.19755 1.20931 1.19832 1.20151 0.80989 0.93165 1.01912 1.21431 0.99991 0.98707 0.94708 1.21678 0.93609 0.97745 0.95197 1.22101 1.02377 0.94683 1.01049 1.22691 0.96598 0.98427 0.89088 1.67705 1.12011 1.25056 1.15029 1.22819 0.93173 0.87559 1.00647 1.23967 0.95090 0.90025 1.02305 1.21095 0.94627 1.02410 0.97022 0.92731 0.92942 0.92832 0.91957 0.91507 0.91087 0.91408 0.86568 0.85993 0.91352 0.94824 0.91954 0.88706 0.89798 0.84431 0.85292 0.83324 0.82440 0.77106 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 3 C -0.08 -0.98 5.34 -27.88 -0.15 -1.13 16 4 C -0.07 -1.05 5.14 -104.53 -0.54 -1.59 16 5 C -0.15 -2.30 9.68 -39.64 -0.38 -2.68 16 6 C -0.07 -1.19 9.59 -39.18 -0.38 -1.56 16 7 C -0.14 -2.91 5.62 -104.97 -0.59 -3.50 16 8 C 0.56 11.87 7.53 -12.33 -0.09 11.78 16 9 O -0.57 -12.58 15.72 5.32 0.08 -12.50 16 10 N -0.58 -11.96 2.46 -177.55 -0.44 -12.40 16 11 C 0.21 4.65 4.63 -5.19 -0.02 4.63 16 12 C -0.55 -12.99 7.30 -34.44 -0.25 -13.24 16 13 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 15 N -0.88 -22.06 13.29 55.43 0.74 -21.32 16 16 Si 0.90 19.06 29.54 -169.99 -5.02 14.04 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.16 2.89 5.52 -5.19 -0.03 2.86 16 21 C -0.15 -2.45 5.48 -104.48 -0.57 -3.02 16 22 C -0.06 -0.88 9.86 -39.28 -0.39 -1.26 16 23 C -0.18 -2.48 10.11 -39.44 -0.40 -2.88 16 24 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 25 N -0.49 -8.18 10.36 -13.25 -0.14 -8.32 16 26 C 0.12 1.96 10.86 -17.55 -0.19 1.77 16 27 C -0.10 -1.99 7.53 -39.18 -0.30 -2.29 16 28 C -0.13 -2.41 9.68 -39.64 -0.38 -2.79 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.07 7.82 -52.48 -0.41 1.66 16 38 H 0.07 1.62 4.22 -51.94 -0.22 1.40 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.09 1.63 8.01 -51.93 -0.42 1.21 16 42 H 0.08 1.47 7.40 -51.93 -0.38 1.09 16 43 H 0.14 2.17 7.61 -52.49 -0.40 1.78 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 46 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 47 H 0.21 4.79 2.51 -52.49 -0.13 4.65 16 48 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -27.07 397.84 -10.52 -37.58 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.00 Total: 11.72 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.74 Total: -14.79 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.16 Total: -42.04 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.07 -10.52 -37.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069453869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.903 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds