Wall clock time and date at job start Tue Mar 31 2020 07:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35895 * 116.99841 * 179.97438 * 11 10 9 13 13 C 1.38753 * 120.05705 * 359.72496 * 12 11 10 14 14 C 1.38126 * 119.94254 * 179.74514 * 13 12 11 15 15 C 1.38284 * 120.05884 * 0.50798 * 14 13 12 16 16 C 1.38252 * 120.10814 * 359.76383 * 15 14 13 17 17 C 1.50697 * 119.97057 * 180.02562 * 16 15 14 18 18 H 1.09000 * 109.32197 * 89.62025 * 17 16 15 19 19 N 1.46297 * 109.32540 * 209.08664 * 17 16 15 20 20 C 1.34989 * 121.01286 * 89.19880 * 19 17 16 21 21 O 1.21599 * 120.44702 * 183.64441 * 20 19 17 22 22 C 1.47280 * 119.10809 * 3.66833 * 20 19 17 23 23 C 1.39336 * 121.98785 * 193.67967 * 22 20 19 24 24 C 1.38590 * 117.89749 * 180.42945 * 23 22 20 25 25 C 1.38382 * 119.56169 * 0.02562 * 24 23 22 26 26 N 1.32043 * 121.48901 * 359.86815 * 25 24 23 27 27 C 1.32011 * 121.37403 * 0.02562 * 26 25 24 28 28 N 1.38551 * 121.86116 * 180.27768 * 27 26 25 29 29 C 1.38164 * 120.05501 * 359.97438 * 16 15 14 30 30 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 31 31 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 32 32 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 33 33 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 34 34 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 35 35 H 1.07996 * 120.02964 * 359.97226 * 13 12 11 36 36 H 1.08006 * 119.97015 * 180.24969 * 14 13 12 37 37 H 1.07999 * 119.95166 * 179.74584 * 15 14 13 38 38 H 0.97005 * 119.49086 * 269.18274 * 19 17 16 39 39 H 1.07997 * 121.04798 * 0.45889 * 23 22 20 40 40 H 1.07993 * 120.21895 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.25206 * 179.85401 * 25 24 23 42 42 H 0.97006 * 120.68474 * 330.08586 * 28 27 26 43 43 H 1.07997 * 120.02751 * 180.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2706 -6.0394 -0.0297 13 6 3.6563 -5.9681 -0.0341 14 6 4.4063 -7.1281 -0.0343 15 6 3.7773 -8.3596 -0.0408 16 6 2.3967 -8.4332 -0.0421 17 6 1.7145 -9.7769 -0.0486 18 1 1.5566 -10.1061 0.9784 19 7 0.4201 -9.6594 -0.7202 20 6 0.3096 -9.8379 -2.0536 21 8 -0.7585 -9.6732 -2.6110 22 6 1.5001 -10.2354 -2.8243 23 6 1.5355 -10.1667 -4.2155 24 6 2.6966 -10.5708 -4.8553 25 6 3.7676 -11.0232 -4.1049 26 7 3.7121 -11.0777 -2.7867 27 6 2.6311 -10.7029 -2.1283 28 7 2.5639 -10.7505 -0.7452 29 6 1.6421 -7.2759 -0.0365 30 1 -0.4850 0.8401 0.0040 31 1 0.6240 -2.5614 0.8771 32 1 0.6246 -2.5525 -0.9029 33 1 2.8725 -3.6002 -0.9065 34 1 2.8711 -3.6087 0.8735 35 1 4.1481 -5.0066 -0.0336 36 1 5.4850 -7.0732 -0.0337 37 1 4.3654 -9.2654 -0.0451 38 1 -0.3710 -9.4502 -0.1991 39 1 0.6853 -9.8094 -4.7774 40 1 2.7648 -10.5336 -5.9325 41 1 4.6691 -11.3391 -4.6087 42 1 3.0680 -11.4133 -0.2476 43 1 0.5637 -7.3339 -0.0371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069486645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:34 Heat of formation + Delta-G solvation = 3.116080 kcal Electronic energy + Delta-G solvation = -28179.693100 eV Core-core repulsion = 24190.227358 eV Total energy + Delta-G solvation = -3989.465743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 6.82 seconds Orbital eigenvalues (eV) -41.47656 -39.89372 -39.01025 -37.96189 -36.41026 -33.71561 -33.41054 -32.65111 -31.45532 -30.91055 -29.92895 -29.07838 -25.95064 -25.07312 -24.93874 -23.09225 -22.58176 -21.80013 -20.77297 -19.95457 -18.65919 -18.34396 -17.98305 -16.71204 -16.41422 -16.10187 -15.81390 -15.71946 -15.53502 -15.35586 -15.24337 -14.85529 -14.45683 -14.33940 -13.95313 -13.73839 -13.53804 -13.40214 -12.92612 -12.71033 -12.60541 -12.34570 -11.68753 -11.47719 -11.44354 -10.96898 -10.89850 -10.76622 -10.55438 -10.50979 -10.12520 -9.91585 -9.74180 -9.70609 -9.65576 -9.34681 -8.91359 -8.47313 -8.40439 -7.95997 -6.12551 -4.17696 0.44537 1.03275 1.20899 1.55281 2.41684 2.66344 2.88999 3.26870 3.31379 3.32924 3.54797 3.73535 3.77464 4.05378 4.32837 4.37876 4.50399 4.55574 4.58682 4.73242 4.85113 4.92692 5.16866 5.19041 5.23729 5.32785 5.50434 5.61210 5.62706 5.75942 5.93653 5.97340 5.98108 6.04351 6.32754 6.39009 6.43743 6.46806 6.49585 6.64703 6.80658 6.86470 7.05605 7.46066 7.60391 7.60538 7.76506 7.93549 7.99562 8.20425 8.87557 9.46728 10.98952 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002379 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.507491 B =11765.332698 C =11970.952308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.145 3.855 13 C -0.202 4.202 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.104 4.104 17 C 0.434 3.566 18 H 0.126 0.874 19 N -0.731 5.731 20 C 0.582 3.418 21 O -0.530 6.530 22 C -0.240 4.240 23 C 0.019 3.981 24 C -0.226 4.226 25 C 0.164 3.836 26 N -0.529 5.529 27 C 0.431 3.569 28 N -0.725 5.725 29 C -0.138 4.138 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.414 0.586 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.418 0.582 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -26.197 -2.819 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.098 3.902 13 C -0.221 4.221 14 C -0.100 4.100 15 C -0.161 4.161 16 C -0.107 4.107 17 C 0.242 3.758 18 H 0.143 0.857 19 N -0.388 5.388 20 C 0.370 3.630 21 O -0.406 6.406 22 C -0.250 4.250 23 C -0.008 4.008 24 C -0.248 4.248 25 C 0.006 3.994 26 N -0.245 5.245 27 C 0.195 3.805 28 N -0.363 5.363 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.253 0.747 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.179 0.821 42 H 0.257 0.743 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.859 -26.188 -2.695 27.475 hybrid contribution 0.054 1.316 -0.035 1.318 sum 7.912 -24.872 -2.731 26.243 Atomic orbital electron populations 1.69966 1.06115 1.27144 1.49456 1.24991 0.94908 0.99390 0.94848 0.86541 0.79506 0.82569 0.78725 1.21074 1.20082 1.20068 1.20923 0.92989 0.90207 1.52563 0.92425 1.19118 0.94141 0.88947 0.98901 1.23361 0.97136 0.80749 0.99646 1.86190 1.36507 1.13183 1.86826 1.19130 0.90090 0.87572 0.93442 1.21475 0.93230 1.00008 1.07340 1.20891 0.99561 0.91783 0.97728 1.20670 0.93230 0.97763 1.04429 1.20189 0.94211 0.93933 1.02390 1.19253 0.78033 0.85597 0.92949 0.85711 1.46277 1.10987 1.73372 1.08149 1.17830 0.87905 0.75616 0.81662 1.90839 1.29356 1.51007 1.69440 1.20391 0.95220 1.14133 0.95266 1.21479 0.97656 0.89488 0.92137 1.21964 0.94812 1.06155 1.01860 1.22729 0.97832 0.90747 0.88079 1.67259 1.24347 1.22701 1.10180 1.18315 0.87412 0.89351 0.85450 1.44379 1.51962 1.37565 1.02409 1.20120 1.00264 0.89172 1.06204 0.92595 0.95380 0.95384 0.93142 0.93047 0.85054 0.85957 0.86009 0.74733 0.83603 0.84096 0.82096 0.74273 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.38 4.68 37.16 0.17 1.56 16 11 O -0.31 -6.41 10.14 -19.41 -0.20 -6.61 16 12 C 0.14 2.45 6.69 -39.22 -0.26 2.19 16 13 C -0.20 -3.04 9.04 -39.43 -0.36 -3.40 16 14 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 15 C -0.14 -1.59 9.26 -39.56 -0.37 -1.96 16 16 C -0.10 -1.18 5.45 -104.65 -0.57 -1.75 16 17 C 0.43 3.53 4.27 -128.70 -0.55 2.98 16 18 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 19 N -0.73 -7.21 4.13 -59.10 -0.24 -7.45 16 20 C 0.58 7.60 7.88 -12.49 -0.10 7.50 16 21 O -0.53 -8.61 17.50 5.28 0.09 -8.51 16 22 C -0.24 -2.87 5.83 -104.85 -0.61 -3.48 16 23 C 0.02 0.20 9.78 -39.04 -0.38 -0.18 16 24 C -0.23 -1.83 10.09 -39.40 -0.40 -2.23 16 25 C 0.16 1.34 11.15 -17.41 -0.19 1.14 16 26 N -0.53 -5.35 10.40 -12.11 -0.13 -5.47 16 27 C 0.43 4.53 7.31 -155.16 -1.13 3.39 16 28 N -0.73 -5.72 4.44 -57.78 -0.26 -5.97 16 29 C -0.14 -1.97 9.25 -39.43 -0.36 -2.34 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 34 H 0.05 1.03 7.68 -51.93 -0.40 0.63 16 35 H 0.13 1.96 6.30 -52.49 -0.33 1.63 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.14 7.39 -52.49 -0.39 0.76 16 38 H 0.41 3.44 8.85 -40.82 -0.36 3.08 16 39 H 0.15 1.46 7.90 -52.49 -0.41 1.04 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.42 2.28 8.96 -40.82 -0.37 1.92 16 43 H 0.13 1.77 7.32 -52.49 -0.38 1.39 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -34.71 368.05 -10.66 -45.37 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.12 Total: 3.46 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -6.07 Total: -10.82 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.11 Total: -44.64 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.10 Total: -15.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.71 -10.66 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069486645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.485 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.82 seconds