Wall clock time and date at job start Tue Mar 31 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35903 * 116.99515 * 179.97438 * 11 10 9 13 13 C 1.38752 * 120.05883 * 359.73264 * 12 11 10 14 14 C 1.38119 * 119.94264 * 179.73892 * 13 12 11 15 15 C 1.38284 * 120.05815 * 0.50774 * 14 13 12 16 16 C 1.38255 * 120.10922 * 359.76622 * 15 14 13 17 17 C 1.50703 * 119.96938 * 179.97438 * 16 15 14 18 18 H 1.09005 * 109.32136 * 269.61916 * 17 16 15 19 19 N 1.46292 * 109.32021 * 149.97928 * 17 16 15 20 20 C 1.34988 * 120.99777 * 270.85352 * 19 17 16 21 21 O 1.21610 * 120.44867 * 176.30458 * 20 19 17 22 22 C 1.47267 * 119.10905 * 356.33354 * 20 19 17 23 23 C 1.39332 * 121.99061 * 166.06745 * 22 20 19 24 24 C 1.38589 * 117.90079 * 179.70565 * 23 22 20 25 25 C 1.38383 * 119.56017 * 359.97438 * 24 23 22 26 26 N 1.32039 * 121.49100 * 0.17186 * 25 24 23 27 27 C 1.32018 * 121.37502 * 359.97236 * 26 25 24 28 28 N 1.38555 * 121.86712 * 179.46767 * 27 26 25 29 29 C 1.38159 * 120.05377 * 359.97438 * 16 15 14 30 30 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 32 32 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 33 33 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 34 34 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 35 35 H 1.08001 * 120.02323 * 359.97438 * 13 12 11 36 36 H 1.08003 * 119.96881 * 180.25639 * 14 13 12 37 37 H 1.08000 * 119.94824 * 179.74467 * 15 14 13 38 38 H 0.97003 * 119.49644 * 90.88288 * 19 17 16 39 39 H 1.08003 * 121.04869 * 359.69016 * 23 22 20 40 40 H 1.08001 * 120.22008 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.24916 * 180.15183 * 25 24 23 42 42 H 0.96993 * 120.68644 * 30.07778 * 28 27 26 43 43 H 1.07997 * 120.02709 * 179.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2712 -6.0394 -0.0004 13 6 3.6569 -5.9681 -0.0070 14 6 4.4069 -7.1279 -0.0020 15 6 3.7780 -8.3594 -0.0010 16 6 2.3974 -8.4332 -0.0002 17 6 1.7153 -9.7770 0.0003 18 1 1.5453 -10.0955 -1.0282 19 7 0.4307 -9.6675 0.6918 20 6 0.3401 -9.8607 2.0247 21 8 -0.7196 -9.7018 2.5998 22 6 1.5418 -10.2659 2.7733 23 6 1.5997 -10.2076 4.1642 24 6 2.7711 -10.6157 4.7822 25 6 3.8301 -11.0619 4.0113 26 7 3.7537 -11.1059 2.6938 27 6 2.6623 -10.7261 2.0555 28 7 2.5750 -10.7577 0.6731 29 6 1.6427 -7.2759 0.0003 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5568 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 -0.8905 34 1 2.8721 -3.6042 0.8895 35 1 4.1485 -5.0064 -0.0122 36 1 5.4855 -7.0728 -0.0030 37 1 4.3662 -9.2652 -0.0013 38 1 -0.3679 -9.4533 0.1847 39 1 0.7583 -9.8553 4.7424 40 1 2.8568 -10.5858 5.8584 41 1 4.7397 -11.3811 4.4982 42 1 3.0714 -11.4148 0.1607 43 1 0.5643 -7.3340 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069486647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:49 Heat of formation + Delta-G solvation = 3.056487 kcal Electronic energy + Delta-G solvation = -28178.063586 eV Core-core repulsion = 24188.595259 eV Total energy + Delta-G solvation = -3989.468327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -41.47955 -39.89306 -39.01004 -37.96375 -36.41072 -33.71654 -33.41274 -32.65270 -31.45825 -30.91040 -29.93085 -29.07750 -25.95178 -25.07492 -24.94138 -23.09356 -22.58354 -21.80057 -20.77468 -19.95611 -18.66282 -18.34548 -17.98267 -16.71410 -16.41748 -16.10455 -15.81621 -15.71906 -15.54235 -15.35522 -15.24184 -14.85270 -14.44931 -14.33814 -13.95606 -13.74085 -13.53869 -13.40175 -12.92650 -12.70945 -12.60780 -12.36024 -11.68444 -11.47661 -11.44801 -10.95612 -10.93429 -10.73925 -10.55682 -10.51149 -10.12711 -9.92228 -9.74229 -9.70599 -9.65727 -9.32044 -8.91306 -8.48131 -8.40664 -7.96016 -6.13031 -4.17980 0.44371 1.03046 1.20942 1.55314 2.41445 2.66275 2.89013 3.24624 3.31657 3.35064 3.54675 3.73385 3.77549 4.05335 4.32656 4.37723 4.50132 4.55335 4.58723 4.73181 4.85028 4.92669 5.16707 5.19200 5.23475 5.32834 5.50403 5.61170 5.62585 5.75782 5.93592 5.97198 5.98191 6.04299 6.32685 6.39057 6.43618 6.46781 6.49647 6.64633 6.80681 6.86442 7.05485 7.46257 7.60154 7.60369 7.76581 7.93417 7.99382 8.20224 8.87750 9.46620 10.98579 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.002374 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.667065 B =11789.328714 C =11992.033801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.145 3.855 13 C -0.202 4.202 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.104 4.104 17 C 0.434 3.566 18 H 0.126 0.874 19 N -0.731 5.731 20 C 0.582 3.418 21 O -0.530 6.530 22 C -0.240 4.240 23 C 0.019 3.981 24 C -0.226 4.226 25 C 0.164 3.836 26 N -0.529 5.529 27 C 0.431 3.569 28 N -0.725 5.725 29 C -0.138 4.138 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.414 0.586 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.418 0.582 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -26.240 2.639 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.098 3.902 13 C -0.221 4.221 14 C -0.100 4.100 15 C -0.161 4.161 16 C -0.107 4.107 17 C 0.242 3.758 18 H 0.143 0.857 19 N -0.388 5.388 20 C 0.370 3.630 21 O -0.407 6.407 22 C -0.250 4.250 23 C -0.008 4.008 24 C -0.248 4.248 25 C 0.006 3.994 26 N -0.245 5.245 27 C 0.195 3.805 28 N -0.363 5.363 29 C -0.158 4.158 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.253 0.747 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.179 0.821 42 H 0.257 0.743 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.939 -26.234 2.507 27.523 hybrid contribution 0.026 1.321 0.053 1.322 sum 7.965 -24.913 2.560 26.280 Atomic orbital electron populations 1.69986 1.06109 1.26919 1.49668 1.24995 0.94909 0.99419 0.94875 0.86430 0.79962 0.83229 0.77757 1.19636 1.20802 1.20804 1.20995 0.93059 0.90174 1.52272 0.92324 1.19130 0.94157 0.88987 0.98915 1.23360 0.97132 0.80743 0.99652 1.86192 1.36501 1.13182 1.86835 1.19131 0.90090 0.87570 0.93445 1.21474 0.93230 1.00010 1.07341 1.20889 0.99562 0.91784 0.97725 1.20678 0.93241 0.97766 1.04421 1.20191 0.94213 0.93928 1.02390 1.19247 0.78110 0.85451 0.93028 0.85708 1.46272 1.11090 1.73167 1.08232 1.17830 0.87916 0.75648 0.81622 1.90842 1.30247 1.51247 1.68316 1.20390 0.95244 1.14119 0.95251 1.21478 0.97536 0.89459 0.92291 1.21966 0.94791 1.06162 1.01866 1.22729 0.97965 0.90771 0.87921 1.67260 1.23763 1.22575 1.10879 1.18320 0.87429 0.89354 0.85436 1.44371 1.51766 1.37634 1.02551 1.20114 1.00253 0.89173 1.06214 0.92713 0.95361 0.95382 0.93049 0.93137 0.85053 0.85961 0.85992 0.74733 0.83605 0.84094 0.82095 0.74274 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.38 4.68 37.16 0.17 1.56 16 11 O -0.31 -6.41 10.14 -19.43 -0.20 -6.60 16 12 C 0.14 2.45 6.69 -39.22 -0.26 2.19 16 13 C -0.20 -3.04 9.04 -39.44 -0.36 -3.40 16 14 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 15 C -0.14 -1.59 9.24 -39.56 -0.37 -1.96 16 16 C -0.10 -1.18 5.45 -104.64 -0.57 -1.75 16 17 C 0.43 3.53 4.27 -128.74 -0.55 2.98 16 18 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 19 N -0.73 -7.20 4.15 -59.11 -0.25 -7.45 16 20 C 0.58 7.59 7.88 -12.50 -0.10 7.49 16 21 O -0.53 -8.60 17.50 5.27 0.09 -8.51 16 22 C -0.24 -2.86 5.83 -104.85 -0.61 -3.47 16 23 C 0.02 0.20 9.78 -39.05 -0.38 -0.18 16 24 C -0.23 -1.82 10.09 -39.40 -0.40 -2.22 16 25 C 0.16 1.33 11.15 -17.41 -0.19 1.14 16 26 N -0.53 -5.33 10.40 -12.10 -0.13 -5.45 16 27 C 0.43 4.51 7.29 -155.15 -1.13 3.38 16 28 N -0.73 -5.71 4.41 -57.80 -0.25 -5.96 16 29 C -0.14 -1.97 9.25 -39.44 -0.36 -2.33 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 34 H 0.05 1.03 7.68 -51.93 -0.40 0.63 16 35 H 0.13 1.96 6.30 -52.49 -0.33 1.63 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.15 7.36 -52.49 -0.39 0.77 16 38 H 0.41 3.44 8.85 -40.82 -0.36 3.07 16 39 H 0.15 1.45 7.90 -52.48 -0.41 1.04 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.42 2.28 8.96 -40.82 -0.37 1.91 16 43 H 0.13 1.77 7.34 -52.49 -0.39 1.38 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -34.73 368.01 -10.65 -45.39 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.12 Total: 3.38 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -6.07 Total: -10.82 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.11 Total: -44.58 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.10 Total: -15.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.73 -10.65 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069486647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.443 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds